TCONS_00019955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019955
Unique NameTCONS_00019955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019955 ID=TCONS_00019955|Name=TCONS_00019955|organism=Clytia hemisphaerica|type=transcript|length=354bp
TGTTGGCTTACCTTCAAGACATAACATTGGGGATTTTAATGTTCAATGCC
CACACTGTAATGCAACCAAGTTCCCTGATGAATTATTCAATTGTTGTGTT
CAGGGAGCAGTACGGCTACCCCCAGCTTTGCCGTTTCCAGATGATTTACG
TGAGCTCTTTACATCTAATTCTGCAGAAGCAAAGAATTTCAGGAAGCTGA
TTCGTGTTTACAACAatttgtttagttttgtttCCATGTCTGCCAATATC
GTTGACCCACCTGGACGGGGACCTCCCTGTTTCAGAATTTGTGGACAGAT
ATGTCATAGATATGGTGCATTATTTCCTGATGACAATGCCCAAGCGTCGC
TCAG
Run BLAST on NCBI

protein sequence of TCONS_00019955-protein

>TCONS_00019955-protein ID=TCONS_00019955-protein|Name=TCONS_00019955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
VGLPSRHNIGDFNVQCPHCNATKFPDELFNCCVQGAVRLPPALPFPDDLR
ELFTSNSAEAKNFRKLIRVYNNLFSFVSMSANIVDPPGRGPPCFRICGQI
CHRYGALFPDDNAQASL
Run BLAST on NCBI

transcript from alignment at sc0000339:36368..36721

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019955 ID=TCONS_00019955|Name=TCONS_00019955|organism=Clytia hemisphaerica|type=transcript|length=354bp|location=Sequence derived from alignment at sc0000339:36368..36721 (Clytia hemisphaerica)
CTGAGCGACGCTTGGGCATTGTCATCAGGAAATAATGCACCATATCTATG
ACATATCTGTCCACAAATTCTGAAACAGGGAGGTCCCCGTCCAGGTGGGT
CAACGATATTGGCAGACATGGaaacaaaactaaacaaatTGTTGTAAACA
CGAATCAGCTTCCTGAAATTCTTTGCTTCTGCAGAATTAGATGTAAAGAG
CTCACGTAAATCATCTGGAAACGGCAAAGCTGGGGGTAGCCGTACTGCTC
CCTGAACACAACAATTGAATAATTCATCAGGGAACTTGGTTGCATTACAG
TGTGGGCATTGAACATTAAAATCCCCAATGTTATGTCTTGAAGGTAAGCC
AACA

Coding sequence (CDS) from alignment at sc0000339:36368..36721

>TCONS_00019955 ID=TCONS_00019955|Name=TCONS_00019955|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000339:36368..36721 (Clytia hemisphaerica)
GAGCGACGCTTGGGCATTGTCATCAGGAAATAATGCACCATATCTATGAC
ATATCTGTCCACAAATTCTGAAACAGGGAGGTCCCCGTCCAGGTGGGTCA
ACGATATTGGCAGACATGGaaacaaaactaaacaaatTGTTGTAAACACG
AATCAGCTTCCTGAAATTCTTTGCTTCTGCAGAATTAGATGTAAAGAGCT
CACGTAAATCATCTGGAAACGGCAAAGCTGGGGGTAGCCGTACTGCTCCC
TGAACACAACAATTGAATAATTCATCAGGGAACTTGGTTGCATTACAGTG
TGGGCATTGAACATTAAAATCCCCAATGTTATGTCTTGAAGGTAAGCCAA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011202XLOC_011202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019955-proteinTCONS_00019955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019955-exon-sc0000339-1491911889:36368..36721TCONS_00019955-exon-sc0000339-1491911889:36368..36721Clytia hemisphaericaexon
TCONS_00019955-exon-sc0000339-1510915933:36368..36721TCONS_00019955-exon-sc0000339-1510915933:36368..36721Clytia hemisphaericaexon
TCONS_00019955-exon-sc0000339-1575043694:36368..36721TCONS_00019955-exon-sc0000339-1575043694:36368..36721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:36368..36721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.477191	0	0	0	0.260736	0.314567	0.294494	0	0	0	0	0	0	0	0	0	0	0	0	0	0.346164	0	0	0	0.703348	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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