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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019959 ID=TCONS_00019959|Name=TCONS_00019959|organism=Clytia hemisphaerica|type=transcript|length=1653bp
ATTGTTACTAACAGTCATctcaaaagaaaaatctttcactTAGCGCCCAC
ATGTCATATATTAAAGAAAGTAAAACTTGTGGTACCCCTCTGATTCAAAA
TGTGACCTTTTAATTTTAAGTTAAGGTGAgtccaatttaatttgttgttc
tacgggcccgaccgaccctTTTATTGCTTAAATCAAAAAAATAATAATAT
CGAATTTCCACTACAATATATTTTACACACTAGTTATTTGTAAGAATCAA
ACTTGAATAAGGCTGAAAATTAATTCAAGAAATTGAAAAATCATAAAAAG
CATTCCATACACTAAAATTTTATTATGATCATCTTCAAAGATAAAAAACA
AAGCAAATCAATTTGTGTATCTGTGTGGTTGGTACTTTACAGACCAGTAT
TTTACCCGAAATAAACGTTGTTTTTTTTATAAAGAACACGTTTATAAGGA
ACTCGAGGCTGAAAATGGTCCAAAAAATAAGGAATTGTTAAGGAACTGCT
CAGGCTGAGAATAAGAAAACAAGTTTTAAGGAACAGTAAAAGATGGTTAT
CCAAACTAAGCAGCTATAtaaataaggaactcgataaggaactttgaggc
tgaaattctctgtaaaaataaggaactcaaggctcagagcaaagttaagg
ttccttacaaaaaaaaaaacgtgtaaccaaACCAAATAGccaaagctgaa
attttgccaGCAAGTTTGTATTGACAACGTTTACAGTAACTCAATGGCAC
TACGTTtcatgtattttacagaccagttaggaaactctcaaattttcatg
ttttggtCTTATTCAAACCAAGAATTTGGGTCGATATTAACCaaagtttt
tcatcaaaaaccCCCAGAATGTCGGGAACCTCTCAAACAAAATTTGTCTG
CAAAGGTCTgtaaaatttttcatcaaaaacgaccagaattataaaatttt
caaattcagtctGGCCTGTAAAGTACACAAATATGGTGGTTGGTAAAAAT
TTGACCGCATGCCTCGTAACTTTTCAATTTTCCCTCCCAAGACGCCAAGT
TGGTGGAACCACCCACGCTAGTTCCTTGTATGGAAAATGTTCTGAGCCCC
CTCCCAAGCAGAAAGGGAGGGGTGGGAGAAGATATGAAAATATCATGAAt
cattaaaataacattttttcccACCAATCGACCCTGCCCTCCTCCAAACT
CCTACTCCTGTCTGTTAGCCACAGTGGCAGTGATGACATAATCAAGCTag
agtaaaaataaataaataaagtttttgcaatttgattgctagaaaatcaa
aaaatctgtCTGCATTTTCGAGACATTGCAGAAGCTTTGAGCAGCTAATA
AATCAGTGCTAGTGTTACCTTTTCCTTAACAGCGTGTAAAATTACGTCCA
TGTCTGTGACATCACCAGATattattctttttctttgaagCGCCATGTTG
GCGTCTGACCAACGTGGGTGGCAAGATGCAAAAGGGCGTCGAGAATGTTC
TCGTGGATTAATTCATAATGGCTCAAATTCTCGGCGTCCGTAATTTTAGC
GAAACCAAGTTCGGTTGCCGTATTCTTCGTATAAGACCCAGTTTGCATTC
AGTTACAGTCGCTTCACACTCGATAGCATTCAGTTAACATTTGTTTATGG
CCG Run BLAST on NCBI transcript from alignment at sc0000339:156380..158032 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019959 ID=TCONS_00019959|Name=TCONS_00019959|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at sc0000339:156380..158032 (Clytia hemisphaerica)
CGGCCATAAACAAATGTTAACTGAATGCTATCGAGTGTGAAGCGACTGTA
ACTGAATGCAAACTGGGTCTTATACGAAGAATACGGCAACCGAACTTGGT
TTCGCTAAAATTACGGACGCCGAGAATTTGAGCCATTATGAATTAATCCA
CGAGAACATTCTCGACGCCCTTTTGCATCTTGCCACCCACGTTGGTCAGA
CGCCAACATGGCGcttcaaagaaaaagaataatATCTGGTGATGTCACAG
ACATGGACGTAATTTTACACGCTGTTAAGGAAAAGGTAACACTAGCACTG
ATTTATTAGCTGCTCAAAGCTTCTGCAATGTCTCGAAAATGCAGacagat
tttttgattttctagcaatcaaattgcaaaaactttatttatttattttt
actctAGCTTGATTATGTCATCACTGCCACTGTGGCTAACAGACAGGAGT
AGGAGTTTGGAGGAGGGCAGGGTCGATTGGTgggaaaaaatgttatttta
atgaTTCATGATATTTTCATATCTTCTCCCACCCCTCCCTTTCTGCTTGG
GAGGGGGCTCAGAACATTTTCCATACAAGGAACTAGCGTGGGTGGTTCCA
CCAACTTGGCGTCTTGGGAGGGAAAATTGAAAAGTTACGAGGCATGCGGT
CAAATTTTTACCAACCACCATATTTGTGTACTTTACAGGCCagactgaat
ttgaaaattttataattctggtcgtttttgatgaaaaattttacAGACCT
TTGCAGACAAATTTTGTTTGAGAGGTTCCCGACATTCTGGGggtttttga
tgaaaaactttGGTTAATATCGACCCAAATTCTTGGTTTGAATAAGacca
aaacatgaaaatttgagagtttcctaactggtctgtaaaatacatgaAAC
GTAGTGCCATTGAGTTACTGTAAACGTTGTCAATACAAACTTGCtggcaa
aatttcagctttggCTATTTGGTttggttacacgtttttttttttgtaag
gaaccttaactttgctctgagccttgagttccttatttttacagagaatt
tcagcctcaaagttccttatcgagttccttatttaTATAGCTGCTTAGTT
TGGATAACCATCTTTTACTGTTCCTTAAAACTTGTTTTCTTATTCTCAGC
CTGAGCAGTTCCTTAACAATTCCTTATTTTTTGGACCATTTTCAGCCTCG
AGTTCCTTATAAACGTGTTCTTTATAAAAAAAACAACGTTTATTTCGGGT
AAAATACTGGTCTGTAAAGTACCAACCACACAGATACACAAATTGATTTG
CTTTGTTTTTTATCTTTGAAGATGATCATAATAAAATTTTAGTGTATGGA
ATGCTTTTTATGATTTTTCAATTTCTTGAATTAATTTTCAGCCTTATTCA
AGTTTGATTCTTACAAATAACTAGTGTGTAAAATATATTGTAGTGGAAAT
TCGATATTATTATTTTTTTGATTTAAGCAATAAAagggtcggtcgggccc
gtagaacaacaaattaaattggacTCACCTTAACTTAAAATTAAAAGGTC
ACATTTTGAATCAGAGGGGTACCACAAGTTTTACTTTCTTTAATATATGA
CATGTGGGCGCTAagtgaaagatttttcttttgagATGACTGTTAGTAAC
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019959-exon-sc0000339-1491911889:156380..158032 | TCONS_00019959-exon-sc0000339-1491911889:156380..158032 | Clytia hemisphaerica | exon |
| TCONS_00019959-exon-sc0000339-1510915933:156380..158032 | TCONS_00019959-exon-sc0000339-1510915933:156380..158032 | Clytia hemisphaerica | exon |
| TCONS_00019959-exon-sc0000339-1575043694:156380..158032 | TCONS_00019959-exon-sc0000339-1575043694:156380..158032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:156380..158032 . |
Blast
The following BLAST results are available for this feature:
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