TCONS_00019966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019966
Unique NameTCONS_00019966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019966 ID=TCONS_00019966|Name=TCONS_00019966|organism=Clytia hemisphaerica|type=transcript|length=262bp
GAGACATTGAATGTCACGTTAAAAGTTATTTGGGCTAAAAATATGCATTC
CTCAATCTTCAATAGCTCTTCAAAGTTGCTCCATAAATTCACCGAGAAAG
TCGCTGCGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTTTAAACG
AATCCCAAGAGAAACATAATGTGATTTCGAAGCAATTATAACAACTTTGT
TCTGACGTCGCCAGACATTGATGATAAACGTGCAGATAATTTGGTGCTTT
ATTAGTATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000339:268946..269207

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019966 ID=TCONS_00019966|Name=TCONS_00019966|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0000339:268946..269207 (Clytia hemisphaerica)
CTTTATACTAATAAAGCACCAAATTATCTGCACGTTTATCATCAATGTCT
GGCGACGTCAGAACAAAGTTGTTATAATTGCTTCGAAATCACATTATGTT
TCTCTTGGGATTCGTTTAAAGAAGATCTTTCTCGGCTGACGGTAAAGCTA
TTCTCGCAGCGACTTTCTCGGTGAATTTATGGAGCAACTTTGAAGAGCTA
TTGAAGATTGAGGAATGCATATTTTTAGCCCAAATAACTTTTAACGTGAC
ATTCAATGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011213XLOC_011213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019966-exon-sc0000339-1491911889:268946..269207TCONS_00019966-exon-sc0000339-1491911889:268946..269207Clytia hemisphaericaexon
TCONS_00019966-exon-sc0000339-1510915933:268946..269207TCONS_00019966-exon-sc0000339-1510915933:268946..269207Clytia hemisphaericaexon
TCONS_00019966-exon-sc0000339-1575043694:268946..269207TCONS_00019966-exon-sc0000339-1575043694:268946..269207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:268946..269207 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984629	1.02695	2.16369	0.966348	1.09336	0	0	0	0	0	0	0.848462	2.1182	6.1586	0.361703	0	0	0	0.677133	0	2.75824	1.80242	0.730358	1.28154	2.05172	0.61037	0	2.80786	0	0.880175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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