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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019970 ID=TCONS_00019970|Name=TCONS_00019970|organism=Clytia hemisphaerica|type=transcript|length=1204bp
ATTAAATCCACATTTTACTAATAAAATTCAAGCTGTCCAAAAGAAGCATG
GTGACAAGAAATCTGTTTGATGGATATTCCACTTCTCAGGAATGCCAAAT
ATATAAATTGCAGCATCTGATGACATTGCTAATACATATGAAAGATTGAC
CCAAAAACTGATGGACCCGTGTGTTTCTAGCTCATGATCATGCTCCAGGA
ATAGCTCCACCAGGTCAGGCGTTATCCAAAACAGCAGAAACGTCAGAATC
AGTAATACTGGTATGAAGAAACGTCTCTTTGATCGGTTTCTATTGAAGTA
ACTATATTTACGTTTGAGTAACGACTCTGTCAGTTTGTTGTGTGTTAAAC
GATGAAAAGTGCTTCTTTTGCGTTCTTGTTTATTTTTCCTTAggttcttt
tgtctttgttttgaGTCATGATTGTTGCTCTTAAAGTTCCTGTTTTCATc
tgtattttcaaaaacattgtcAGTCAGGGTTTCTAGGTCTGttggttttt
tttcaaaaacttctatGTTGGATTCATCAATAACTTTTCCAATGTCTGTA
GATTCTGTAtctattcttttcttttttccagtTCTACCACTCAACGACTC
CAAATCATTGCAATGAGGGTTTATATCTTGCTGTTGATTTTGCGACACCC
TCCTCTTGATAGATTCAACGTAAGTTCgatttttatacattttgatgaaa
atataaAGATAGGTTGGTATAGCTACAACTAAGAAGGTAGCTTCCTCAAT
AGGCCATAAGTAGACTACAATGAAATATCGACGACGGTCTATAGGCATGA
GTAGGAAAATCAATACTGATCCAATAGTAGATATAATCCATGCTAACATC
AAAGTTAAGTGAACTCTGAATTTAGTGACGTATATTGGGTATACAAGGTT
CAGGTAGATGGATAGGAACCGATCCAGTGTTAATACAGCCAAAATTAATA
TATAAACTGTGAAAAACAAAGTTGTCTGAAAGCACCATACAATCTCTGAT
GCTTCCTCAGCTCCAATCACTAAACAAACATGAACAACAATTTTGAATAT
ACATATTGATAACACTGCTATGCTTAAATGTTTCAGGTATAAACGTTGAT
CCTCGGCAGTCCGCAAATTCTTGACAgtgaaaagaaaataaagacctAGC
AAGTGAAGCGAGATGCTGGGTACAAGAAATGACATGGAAATGTGGACATT
GTCA Run BLAST on NCBI transcript from alignment at sc0000345:31794..41021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019970 ID=TCONS_00019970|Name=TCONS_00019970|organism=Clytia hemisphaerica|type=transcript|length=9228bp|location=Sequence derived from alignment at sc0000345:31794..41021+ (Clytia hemisphaerica)
ATTAAATCCACATTTTACTAATAAAATTCAAGCTGTCCAAAAGAAGCATG
GTGACAAGAAATCTGTTTGATGGATATTCCACTTCTCAGGTATGTCTTTC
AGGTATTTGGCAGGGCTTTTGACTCTGTTCCAGGCATTTATGATTTAGGA
ATCATTCCACAGGAGACAGCCTGCCTTGTTTGGTAAAATGTTTGATCCTA
TTAATTTTCACGCAATTACTatttgcagcaaaatttaaagatttgcGATC
AACCATTGACTTTAAAATTGGGAAAAGGACCCTATGATGTTAGGGCTTGG
TAAAAACTTTAGAAttattaaaggaagaaattttggcggaaagaaaatct
ggcggatttggcggatttgactgaaatccgccaaattaagttcccgccaa
aatttcttttttccgccatccgccaaattaaattcctgccaaattaaaca
ttttgaaaatatgatctcttttaaggtgtttttgctatttttttgctgtt
ttgacgccatcttaaggttaaatttttaagcgaccgccaaattaaattcc
cgccaaatttagttttttcgtccatccgccaaattaaattcccgccaaaa
tttcttcctttaaggtagataTCTCAAGTCAAGACCTTGACCCCCAATCA
GGAAATTTATGGAGAATTCCACGAGAGGGTTTTTTGGGACATTGAAAGTG
ACATATTGTATAATGCCACAAAATAGGAAAATGCAACATCTCTTTGGTAA
ATGTCCAGGGGGGGTACagccgcagggtactaacccatagggtactaacc
tgatttttaagaaaaattgtcttaggtaccaccaccccctttttagtacc
gggtacttactttttcttaaggaaaaagggacccccaccccccttttagt
accgggtacttacttttttaaaggaaaaagggacccccaccccctTTTCA
GTACCGGGTACCGGCTTTAAAATTACCAAGGAAAATAGGAGACACCACCC
TTAAAACTTCCCAAGCATGGTCCCAATCTTTCAAAAGCCAGCAAAAGCAG
CTCTTTGTTGTTATTATGACTTGTATATACCATATTTTTAACTCAGATCc
tctaaaaagttctttaaatcaaacacaacttttaattgcaAAGGTAAAAC
AACGAAATTCCttggcaaaagtaaaatattatatagctgTAATAACGGCA
ATAAAAGTATATATCTATCAGAAGAAGTAAAAATCAAGTTGATAGAAATC
GAAAGCTTGGATTGGATGGATTTCCTTATTTTCGTCTTCAATAGATTggt
aatttattcaaaaattattcaaaactgtGTCAATCTTATGAAAGAAGTTG
CAATAGAATAAAGTTGCATTGTTGGCTCTGGTTGGCTTTGCTTAGTTGAC
CTGGCTCCGTCTTAATTGTCATaaacagacaaacaaacaaacaaacaaat
ataaacagaaATAAGCTATAGGGTATAATATAAACTGCAATAAACTAACC
CCTCTAACAAAAACAATCATCAGTTTGGATaagaattttattatttaaaa
gACAGATTGTATCACTTTGGATGCGACATCTTGTAATTCTTTTCATCAGA
AGGCAATGACAAATATATACCTCGTTCTAACTTGAGATATCAAAGACGAC
CTATCCTTCTCACTAATTAAAACAATACTGATTTTGAACAATAGGTTTCT
TTACATTAGCTATTTCAATATTTGTATAACTTAGTGGTCATAAAATTCTC
CTCTTAGAAAGTAGGGAAAGTACCCATGAATTTGAATACAATAATTCTTT
ATTAATAGAAACATAACagttctttttttctgaaaactattGAAACTAAC
AACCTCCAAACTTCCCTACATACTTGATAAGCAGGGAAAGTACCTTCAAT
TGGAAGGGGGAACTTTTTAATACTGTCAGATACTGTAAGCCATAACAAGG
AAATCTTTTCTCATCAAAATCCTGAAAGtcgaagacaaaaaattaaacaa
atgtaCCATATTCAGAGCCTGAGTACTTAGAGAAAATTGAAATGATACCC
ACCCCACCCTAAAATtggtaccgggtactaacttaaAATTGGAGATATAC
CCACCCCCACCCCAAAATTAGTACCGGGTACTAACTTTTTTGAATTTCCA
AATTAGACACCACCACccggctatgggttagtaccctgtggttgtccccc
ccccccctgaaatgTCTTTGCCCTGTAAATAGAGTGGAGGAATGTGAGAG
TTATCTTATAttgattttagttttaaaaatgtttcagcTATTGAGCTTGA
TAGCCAGCTCCTTATCAgcttgttgtttttattttagcatttagcaaATG
TTTGGTTCCTCAGCTGGCAAACAACATTGTTTTAACGGTTATCTTTTGTT
CATTTTGCTTTAAAGCAAAATCTTAATTGGTCGTTTCTTATTCAAAGAAA
TTGAGGACTGAaataaaacatactattttcaaAGGGCCCGAGGGTGTACT
Ggggcaaaatggtcaaaagggtcataaattaatgaaattttgacaaaaat
ttgatcTTCTTGCTGAATTTCGGGAAAATAGTCATCTAAGATTTTTCGAA
CAATTTCCAGAACACACTTATCATCTCACAAACAGTACTCCATGGATAGA
AAGGGGAGATGAAACTTGcactttaaaattgcttatttctaatttttcaa
atgatttatttaaattctaacttttttttatttatgaaatgtatttctca
ggtctattgacctcatAATAatacctttatttaaaaagaaactattttCT
AAATAAACCAATGCACCGTCTCCTAAATCTTCTGTTTATTGCAGGAATGC
CAAATATATAAATTGCAGCATCTGATGACATTGCTAATACATATGAAAGA
TTGACCCAAAAACTGATGGACCCGTGTGTTTCTAGCTCATGATCATGCTC
CAGGAATAGCTCCACCAGGTCAGGCGTTATCCAAAACAGCAGAAACGTCA
GAATCAGTAATACTGGTATGAAGAAACGTCTCTTTGATCGGTTTCTATTG
AAGTAACTATATTTACGTTTGAGTAACGACTCTGTCAGTTTGTTGTGTGT
TAAACGATGAAAAGTGCTTCTTTTGCGTTCTTGTTTATTTTTCCTTAggt
tcttttgtctttgttttgaGTCATGATTGTTGCTCTTAAAGTTCCTGTTT
TCATctgtattttcaaaaacattgtcAGTCAGGGTTTCTAGGTCTGttgg
ttttttttcaaaaacttctatGTTGGATTCATCAATAACTTTTCCAATGT
CTGTAGATTCTGTAtctattcttttcttttttccagtTCTACCACTCAAC
GACTCCAAATCATTGCAATGAGGGTTTATATCTTGCTGTTGATTTTGCGA
CACCCTCCTCTTGATAGATTCAACGTAAGTTCgatttttatacattttga
tgaaaatataaAGATAGGTTGGTATAGCTACAACTAAGAAGGTAGCTTCC
TCAATAGGCCATAAGTAGACTACAATGAAATATCGACGACGGTCTATAGG
CATGAGTAGGAAAATCAATACTGATCCAATAGTAGATATAATCCATGCTA
ACATCAAAGTTAAGTGAACTCTGAATTTAGTGACGTATATTGGGTATACA
AGGTTCAGGTAGATGGATAGGAACCGATCCAGTGTTAATACAGCCAAAAT
TAATATATAAACTGTGAAAAACAAAGTTGTCTGAAAGCACCATACAATCT
CTGATGCTTCCTCAGCTCCAATCACTAAACAAACATGAACAACAATTTTG
AATATACATATTGATAACACTGCTATGCTTAAATGTTTCAGGTATAAACG
TTGATCCTCGGCAGTCCGCAAATTCTTGACAgtgaaaagaaaataaagac
ctAGCAAGTGAAGCGAGGTTGGTATTAGATAGAAACATGTTCGGATGATT
AGACCTTCTTTTGTTTCATGCCCATCTGCTGACGACAGCATTTTTCTTCA
ATCCATATTTTTCTTGAACTGAAAttatagaaaaaacaaaattaaataaG
TCATACGGAGGGACAATATAGTAGTTTTAAGAGATCATATTGTACTTACT
TCATCGTGCTGAGTACGCTTGTTTTAGTAACTCATTTCTTCTGGCCTCAC
AATCCTTAACAATTAATTCAAGGGGTCCAGAATTTAAATTAAAGTGTAAA
CTCAATCCTTTAAAGTGCTaagtaaaaaactaaaaaatcttAGGTTAAAG
TTCTAATGACTTATGTAGGTACATTTTAATCCAAACAGACCCTTCCAGCA
GCATTTGATTAAAAtcttaaagatattttattttttaatcacaATGCATC
AATGTCACACATCCACGTCCTAAGGTAGGGTTGGATAAACGTTTGAAATT
TCAAGACTAAAAACAGTAAGAAATTACAGTAAGAAAATGAAAGGAGATTA
TATCCATATCTTTTCATCTCTCTGAAAGTTCTAGTCACTTTGAATGATGA
TTTGAAACTGTAGTTGTTATTTGACAACACTATTATTCCCTCTAAACATT
GTAATGGAGAAACAAATCTAAATTATCGCTATTTAAATCATTtacatttt
ttattaaattttcaaatgccTTTGAGAATAGTATGTTTGAAGTAAGTCAA
TTTCAAATTCCTCTAATTACTGTTCgataaattaaaaaagaatacTTATT
GTGTAAATTGCCCAATTTTTATTGACATGAAAAAATCATCAACAATTTAA
CCGATTAATACGACCTGCTAgtactgaatgaaaaaaaaatctaatttgat
TTTTGTCATCAATTAGAATTTTAAGTAATCTCTCTTTTAAGAACTGATTT
GTGCTGCTTATGTCTAGGGCTCTTATCCTTTAATCATTTATCATTAAACT
GCACTTGTACATTACAGTTCTTCTTCACAGAAAgtacaccttttttataa
gaacgtaaAAAAATTGAAGCCCTTGGATTTtcttaaatctttgtttttag
ccttaaaatgtttttatcatgTTTCACCGTTTTAGGAGTATTTTTGtgca
tatttttatgaaattcgttgtattagagtctgcaaagcctgaaagtgttc
ttaacttgtttttatatttcccccatcgaagccttatgttcttccCAAGT
ATaagctgtttttgtttttaacgtGTAAGCTGTGCCAGCGTGAATAGACt
aagaccattgagtttcaaggctgaagggctagaggtgaaactttaaccct
tctcaggcgaGCGAAAtcgaagctacttatttcccatccagaacgcgcct
tgaacgcgccgtaatcatgacgacggattgtatctagcggttcctttgtt
ttggaggactacattttttaaaatctagcgatagattttagtttcaatct
ggcgtttgtgtaaaagctacgagcgggcgttctggatgcgaataaagtgg
tttcatttcccatccaggagtctcgcctctagcccttcgggcttgaaaca
cAATGACTAGGACCATGctcgcacgtgacggttccgtttcgctccgaaac
aaaatgaagccattctattggttagaagtgacataacacttgaatgtaac
caatagaatggcttcatttcgtttcgctccgaaaTGGAACCGTCACCTGT
GAACATGGACTAATTCCCACATGGTGGCAAACAAAGAATGTACCATTAAA
AATCGTGACAAGATATCTACTTTATTGATTCAAATtgagttttccaattt
tcaacCACTCTTATAATCTTATAAGAAAGCCAAGAAAATAACTTTCTGAG
GTGatttctgttttcaaatttggaaaaatcttcACAAATTGATAATAACT
TTCAAACATTGTCAATAACAAGATAATAGTTTTTCACAAGTTAGCCCAAA
CATGAATTATCTAGGTGTGAGATATATCAATATCAAGGAACAACACTCGC
TTTTGAATATACTGGAGTATTTTTTTAATATGCAAGGTGTTTTTTGTGAA
AAGATTCCAACAAACTAAAGAGAATCTTTGTGATTGATTTTCATACGATT
TTTAATTCTTAAATTCATACGTGAGATATTgataaaaaccaaaatatttc
ttttctttctttctttgaaaACGAAATGATAAAAGATGATTTTTTGGTTA
AGAAATCGGCTTTGAACATAAGAGGAATGATTTTGAAATCCAACAGATGT
ATTCGCAAACAAATTCTTTATATCAATTTCAAGTtcagtatatatatata
ttttttgaaaagataaaaaaagtaacATTCCAGGAAGAAATGAATATAAC
TTAcaattacttcgaataaaccaCCCTCTTTATTTAACCACCGCTTCGAA
TAAATTCCCTTCCTGAAAAGGTTGTCCATTACAGTATATCTTTCTCATTA
ACACCCCTCTTGAGCTCTAAACTTGAAAAATTCCAGACCTGATACCCAAG
GCTAACTCGCGCTTAATTCAAGTTtgaaaacgatgaaaatttTGGTTACA
Attcacgctttttataagaacacataaggcttcgatgaccaaaagttaag
aacattttaaggctttacacaGACaccctaaaacacccaatttcttagga
aaatggtcaaaaatactcacaaatggtgaaaataagaacatgtttaggac
atttttaggcttaaaactcaaaaagttaagaacaaaaAATTCTTACAAAA
GAACCActccaaaaacaccaaaactgCCTTTAAATTTGAAGATTGTACAA
ATGTACagaaaattacacaaaaatcttgctacattcaataatgttttaat
aaaatttataattacTATAAAATTGATAATGATAATTTAGTCCagatttt
taataaaagcacCCTATTGCATTAGAAGTACTTACAAAATAAGATTCCAT
CAAATGGTGAGAATGTTAAGCGAATGCAATtgcaatgaaaaataacaaca
gAATATCATGCTCAGTGATTTCAAATGTACTGTATAACAAAAAGTCTATT
CTTTCCCttttataatatcaaaatttttatttaatatttgtttgctCATT
TCGCTTCACAAAACATTCTGATTGATATAATTCGTTATTTTGAgcccaaa
aaaatttccctGGCGTCTTCTAAAACCAATTAGATTAATTCAAACtggtc
tgaaaaaaaaatcgactGAATTAGaccaaaaaaatgttattaatGAAACT
TCAGTATTATAGCGAGatgtaaaaaaatttcttggGTTATAAATTTTGAA
GATAAAAGCGACTTGTTTCCTCCtttaaagataaattttcaataaaaaag
taaaaacccGGGTGTCTGctaaacataaaaagatcaaGACGCAGTTGTCT
CAGTTGAAACCTCTTATCTAAGctaattcaaaaaaatctttcgtaGTTTT
TTGggattctttctttttgtttcaatgTTACAATATTGTCTTCAGAAAag
cttcttttaatttgaaaaggGAAATTCAGAACAtgtacttttttttataa
gaacaaaaaaacataaggctttgatggtaaaaatattaagaacaagtaaa
gaacattttaagactttacgGAAcctaaaacactcgatttcttaggaaaa
tggacaaaaatactcacaataAAATGGTGAacataagaacatgttaagaa
catttttaggcttaaaactcaaaaagttaagaacatctgaaggcttcaaa
gattttggatgctcttataaaaaatgtgcaccctttaattttttctaaca
ttacgtcacttttacaACAGCTGATTGGGTGCAAGTGAAGTaatacaccc
ctgcctcacagccccggtggattttttttcctcagtgggacAAAAAAATC
CTATTTAAATCCCAATGGTgatgaaaattctattgttctaaggttAGAAA
GTCAAGCggagatggttttggagagcaatttcaaacattgaatttcTAGT
GGGGATAagatcaaagtcaatttcccagtggggctaaagttcaagggtat
tttcccactagggacgaaattttgccaaattttttaGTGGGGCTGGTGTC
TCAGCGGGTCTGGACACAGGGGTGTAGTATTTGTtaggaaaaaaaacata
atttcgTTATATAAGTCTGCAGTGGTGCGTATGATAAATAGGTGATACCC
CACTTCAAATACACTAGAATATATACCTTGATAGATGAGAAAATTTTATC
CCCTTTTTCCTTACTCCATTTGTCGCAATTATTCATTATATTTTTCTTCG
TCGTCTAAAAGATCTTTCCTATTAATTATGTACATCATAGTTATGAGATA
AATcatgttttaaagatttttttaaagaaatcccttgctcaaacaaaaat
ttgatatcCCGGATTTTAAGTTTTGGCACAATGATTTCATACACTCTTAT
GTATAAAATCAAGTTTAGTACTTTTGTATCAAAATTGGCAGCggtctttt
ttttcaatgaataTTAAAATGTCGTTTTAAGTGACTTAATTTTCAGTTTA
TTTGTTTGTCATTtcaaataaattaattttcagGCTATTCtcctcaaaaa
tatcttttccAACAGTCTATATTCTTTTTGATATATTGTAAGTAAGggtg
aaaatttctgaaaatttttgagacGGACTCTTCTTTGTCTAGCATGCTAC
ATTACGGAAagaaccattcaaaaagtatgtacACTCGAATTTAGGAAAAA
TTCCCActcccccttgtacgctctGATAGTAACCCACGTTCCGCGTGCGT
ACGCTTTTCCGATTGCCCCCTCTAAGAAAGTTTATATTTGTGCTGAAACT
TCTTCTAGATATCAAATAGAAAAGGAGACTAAAGTATAAACTAagctttc
atttttcaaatagaAGAAGGTTagaaaaaaactagaaaaaattgtttaaa
aaaattgcaaagcAGAACCCCCTACCCTTACCCTTGGGTACGCTTTCGTA
AGCTTTTTAAAGGACCACCTCAGAGTGTACGTACGTTTTGAATGGTCCCG
AAAAGTTTTTAAACACTTTTCAAACCTCCGACTGTTATTTTTGGTTCGcc
atttgtttgattgtttagCCTAGCCCCTGTTTGTGGCTGTCTAAATCCCG
TCGGACATCAATATTACCCATCTCCTTTATTTATTTCAACGTAATCTGAT
CCCCGCAATATCTTAAAAAGTCTATCTTTATCACAGATGCTGGGTACAAG
AAATGACATGGAAATGTGGACATTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019970-exon-sc0000345-1491911889:31794..31882 | TCONS_00019970-exon-sc0000345-1491911889:31794..31882 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1510915933:31794..31882 | TCONS_00019970-exon-sc0000345-1510915933:31794..31882 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1575043694:31794..31882 | TCONS_00019970-exon-sc0000345-1575043694:31794..31882 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1491911889:34638..35710 | TCONS_00019970-exon-sc0000345-1491911889:34638..35710 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1510915933:34638..35710 | TCONS_00019970-exon-sc0000345-1510915933:34638..35710 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1575043694:34638..35710 | TCONS_00019970-exon-sc0000345-1575043694:34638..35710 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1491911889:40980..41021 | TCONS_00019970-exon-sc0000345-1491911889:40980..41021 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1510915933:40980..41021 | TCONS_00019970-exon-sc0000345-1510915933:40980..41021 | Clytia hemisphaerica | exon |
| TCONS_00019970-exon-sc0000345-1575043694:40980..41021 | TCONS_00019970-exon-sc0000345-1575043694:40980..41021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:31794..41021 + |
Blast
The following BLAST results are available for this feature:
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