TCONS_00020015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020015
Unique NameTCONS_00020015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020015 ID=TCONS_00020015|Name=TCONS_00020015|organism=Clytia hemisphaerica|type=transcript|length=626bp
AGCCCTTACAAAAAACTGAGCTGGTTTTGTAATAAGAAAACACTTGGAGA
ACGctattaaaaaaacaacataaaacatAAATTGCAATTGTTAATTATAA
ATGGTTCAAATAAAACGCCTTTAATCAGCTGAACATTTAGTTTAATCACA
GGTAATAAATCATACACACAGGAAATTTCTAAAGGAAGAGGCTAAATAac
caaaatgaccaaaattaaTTGGGCGGTCATCTTAAACGATATTTTTCTTA
AGGGCATCATTAAGCAATCAGCGACTCGTGAGAGAGTGATTAAATAGATG
ACATGACTAATTCTATACAATTTTCTCATGATAATGGGAGACCGCTTGTT
TGAGAGCGATATGCCCTTTCAACCGCATAATACCGCAATTtctatttaca
ttttttgatgCTATTGAAACGTGAACTTTCTGTTATTGCGGTGTAAAACA
ACTTTTGAAGTTCAGTTCAATTAGACTGATACGTTCAATAGATGTACTCt
tgaaaatatagctttttctcATTTAAATGAAAACGTTTAACGTTTCTAAC
ATCTAAATACATATGAAATAATAGCAAGGTCATCACCACCAAAAGAAGTA
CAATATGTAGGAGAGAGCAAGCTGGT
Run BLAST on NCBI

transcript from alignment at sc0000345:227978..228603

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020015 ID=TCONS_00020015|Name=TCONS_00020015|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0000345:227978..228603 (Clytia hemisphaerica)
ACCAGCTTGCTCTCTCCTACATATTGTACTTCTTTTGGTGGTGATGACCT
TGCTATTATTTCATATGTATTTAGATGTTAGAAACGTTAAACGTTTTCAT
TTAAATgagaaaaagctatattttcaaGAGTACATCTATTGAACGTATCA
GTCTAATTGAACTGAACTTCAAAAGTTGTTTTACACCGCAATAACAGAAA
GTTCACGTTTCAATAGcatcaaaaaatgtaaatagaAATTGCGGTATTAT
GCGGTTGAAAGGGCATATCGCTCTCAAACAAGCGGTCTCCCATTATCATG
AGAAAATTGTATAGAATTAGTCATGTCATCTATTTAATCACTCTCTCACG
AGTCGCTGATTGCTTAATGATGCCCTTAAGAAAAATATCGTTTAAGATGA
CCGCCCAAttaattttggtcattttggtTATTTAGCCTCTTCCTTTAGAA
ATTTCCTGTGTGTATGATTTATTACCTGTGATTAAACTAAATGTTCAGCT
GATTAAAGGCGTTTTATTTGAACCATTTATAATTAACAATTGCAATTTat
gttttatgttgtttttttaatagCGTTCTCCAAGTGTTTTCTTATTACAA
AACCAGCTCAGTTTTTTGTAAGGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011247XLOC_011247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020015-exon-sc0000345-1491911889:227978..228603TCONS_00020015-exon-sc0000345-1491911889:227978..228603Clytia hemisphaericaexon
TCONS_00020015-exon-sc0000345-1510915933:227978..228603TCONS_00020015-exon-sc0000345-1510915933:227978..228603Clytia hemisphaericaexon
TCONS_00020015-exon-sc0000345-1575043694:227978..228603TCONS_00020015-exon-sc0000345-1575043694:227978..228603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:227978..228603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.248895	0	0.0942441	0.229466	0.271991	0.546909	0.307206	0.573552	0.177609	0.172392	0.226647	0.0565831	0	0.0966208	0.0518445	0.191604	0.0654628	0.271321	0.283918	0	0.120369	0	0	0	0	0.11666	0	0	0.0962098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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