TCONS_00020017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020017
Unique NameTCONS_00020017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020017 ID=TCONS_00020017|Name=TCONS_00020017|organism=Clytia hemisphaerica|type=transcript|length=358bp
gttcaaaaatataaacaaatgattttcaaagaaatattttgcgATTTTAC
GACCTTGCAAAAGTTTGTACAATTATCAAAGAATTAAAGTAAGCccataa
aaacatttttctatcAATATATAGTAAAATTATAATATTatgattaataa
aaaaaatttaaaaattttagttttagatAGTATTCAAAGTTTGATGTAGC
TGTTCATTGTCCATGAATTCAACTTTATTCAATGCTTTTTGCACCAGTAT
CTTAGCAACAGCTTTTTGTTTGTCAGAAAATTGACTTAACTGTCCTTCAA
CTTGTTTGAAAAACAATAGATCTTTCGCATTGCCttctaaacttttaatt
aactCAGC
Run BLAST on NCBI

transcript from alignment at sc0000345:270858..271215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020017 ID=TCONS_00020017|Name=TCONS_00020017|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000345:270858..271215 (Clytia hemisphaerica)
GCTGagttaattaaaagtttagaaGGCAATGCGAAAGATCTATTGTTTTT
CAAACAAGTTGAAGGACAGTTAAGTCAATTTTCTGACAAACAAAAAGCTG
TTGCTAAGATACTGGTGCAAAAAGCATTGAATAAAGTTGAATTCATGGAC
AATGAACAGCTACATCAAACTTTGAATACTatctaaaactaaaattttta
aattttttttattaatcatAATATTATAATTTTACTATATATTgatagaa
aaatgtttttatggGCTTACTTTAATTCTTTGATAATTGTACAAACTTTT
GCAAGGTCGTAAAATcgcaaaatatttctttgaaaatcatttgtttatat
ttttgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011249XLOC_011249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020017-exon-sc0000345-1491911889:270858..271215TCONS_00020017-exon-sc0000345-1491911889:270858..271215Clytia hemisphaericaexon
TCONS_00020017-exon-sc0000345-1510915933:270858..271215TCONS_00020017-exon-sc0000345-1510915933:270858..271215Clytia hemisphaericaexon
TCONS_00020017-exon-sc0000345-1575043694:270858..271215TCONS_00020017-exon-sc0000345-1575043694:270858..271215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:270858..271215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16347	1.48526	0	0	0.324166	0	0.306122	0	0.406456	0	0	0.205472	1.43808	0.674242	0.328417	0.697457	0	2.15079	2.03262	1.69374	2.18819	2.66092	0.587036	1.98458	0.511287	0.456311	4.27742	1.11543	3.67411	1.97364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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