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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020022 ID=TCONS_00020022|Name=TCONS_00020022|organism=Clytia hemisphaerica|type=transcript|length=938bp
CAAATAtgtagcttcaatggaaccatTATCTAAAAGCAAAAATCATGAGT
TGGCACATTCACTAAGCCGGCTCATCACCGCCATCAAAGAGATCATCCAA
CTCGCCGAAATCCATGGTATCCAACAACATCTCTACTACAGTGAAGGCTT
AAACCACATCTATAGTCTTCTCGGTGAACCAACACTTACTAGATGGCTAC
GCAAAAGTACAGATGAAGACTTCACACCAAGACAATCATGGTACCATTTT
GTCAAGTATCTAGAGCAAGAACAGAAGCTACAACAAACCAAATTGACTGT
CACCCAGACGTACCTCGACAAACCCAAACCACCCTGTCCCAGGACTGACA
GAGGACCTAANCATGGTACCATTTTGTCAAGTATCTCGAGCAAGAACAGA
AGCTACAACAAACCAAATTGACTGTCACCCAGACGTACCTCGACAAACCC
AAACCACCCTGTCCCAGGACTGACAGAGGGCCTAACGGCAAAGGCAGATC
AGGCTACTACAACAACCCAGACAACAGACTGTGCAATATCTGTGACTCCG
AGCCTGGACAAGACAATCACCTTCCATCAAAAGGTCCAGCCGGAAAGCAA
ATCATCCAATACCACACATGTCACAAATTTGCTGAGTTGAGTCCTGCCAA
CCGTTATGCTGTTCTCCAAGCAAAAGGATACTGCTATCAATGTCTTTTCC
CAGGAGCAAGCATCTCACATGGGCGACACAAAGAAGGCAAATGTCAACGT
GACTTTGCATGTCCGCACGCATCACATCAAGACTTCCCACTTAAACATAT
CCTTGTCTGTCATGATCACAAAGACACGGATGCAAACAAGAAactccttg
agaaatacaagtCGAAGTACCTGAAGAATCCAAACCTACCACCATTCACA
AAGAACATAAGTCTTTCATTCCATTCGTGCTTCAAAAC Run BLAST on NCBI protein sequence of TCONS_00020022-protein >TCONS_00020022-protein ID=TCONS_00020022-protein|Name=TCONS_00020022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
KYVASMEPLSKSKNHELAHSLSRLITAIKEIIQLAEIHGIQQHLYYSEGL
NHIYSLLGEPTLTRWLRKSTDEDFTPRQSWYHFVKYLEQEQKLQQTKLTV
TQTYLDKPKPPCPRTDRGPXHGTILSSISSKNRSYNKPN Run BLAST on NCBI transcript from alignment at sc0000345:338891..339828 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020022 ID=TCONS_00020022|Name=TCONS_00020022|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at sc0000345:338891..339828 (Clytia hemisphaerica)
GTTTTGAAGCACGAATGGAATGAAAGACTTATGTTCTTTGTGAATGGTGG
TAGGTTTGGATTCTTCAGGTACTTCGacttgtatttctcaaggagtTTCT
TGTTTGCATCCGTGTCTTTGTGATCATGACAGACAAGGATATGTTTAAGT
GGGAAGTCTTGATGTGATGCGTGCGGACATGCAAAGTCACGTTGACATTT
GCCTTCTTTGTGTCGCCCATGTGAGATGCTTGCTCCTGGGAAAAGACATT
GATAGCAGTATCCTTTTGCTTGGAGAACAGCATAACGGTTGGCAGGACTC
AACTCAGCAAATTTGTGACATGTGTGGTATTGGATGATTTGCTTTCCGGC
TGGACCTTTTGATGGAAGGTGATTGTCTTGTCCAGGCTCGGAGTCACAGA
TATTGCACAGTCTGTTGTCTGGGTTGTTGTAGTAGCCTGATCTGCCTTTG
CCGTTAGGCCCTCTGTCAGTCCTGGGACAGGGTGGTTTGGGTTTGTCGAG
GTACGTCTGGGTGACAGTCAATTTGGTTTGTTGTAGCTTCTGTTCTTGCT
CGAGATACTTGACAAAATGGTACCATGNTTAGGTCCTCTGTCAGTCCTGG
GACAGGGTGGTTTGGGTTTGTCGAGGTACGTCTGGGTGACAGTCAATTTG
GTTTGTTGTAGCTTCTGTTCTTGCTCTAGATACTTGACAAAATGGTACCA
TGATTGTCTTGGTGTGAAGTCTTCATCTGTACTTTTGCGTAGCCATCTAG
TAAGTGTTGGTTCACCGAGAAGACTATAGATGTGGTTTAAGCCTTCACTG
TAGTAGAGATGTTGTTGGATACCATGGATTTCGGCGAGTTGGATGATCTC
TTTGATGGCGGTGATGAGCCGGCTTAGTGAATGTGCCAACTCATGATTTT
TGCTTTTAGATAatggttccattgaagctacaTATTTG Coding sequence (CDS) from alignment at sc0000345:338891..339828 >TCONS_00020022 ID=TCONS_00020022|Name=TCONS_00020022|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000345:338891..339828 (Clytia hemisphaerica)
TCAATTTGGTTTGTTGTAGCTTCTGTTCTTGCTCGAGATACTTGACAAAA
TGGTACCATGNTTAGGTCCTCTGTCAGTCCTGGGACAGGGTGGTTTGGGT
TTGTCGAGGTACGTCTGGGTGACAGTCAATTTGGTTTGTTGTAGCTTCTG
TTCTTGCTCTAGATACTTGACAAAATGGTACCATGATTGTCTTGGTGTGA
AGTCTTCATCTGTACTTTTGCGTAGCCATCTAGTAAGTGTTGGTTCACCG
AGAAGACTATAGATGTGGTTTAAGCCTTCACTGTAGTAGAGATGTTGTTG
GATACCATGGATTTCGGCGAGTTGGATGATCTCTTTGATGGCGGTGATGA
GCCGGCTTAGTGAATGTGCCAACTCATGATTTTTGCTTTTAGATAatggt
tccattgaagctacaTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020022-exon-sc0000345-1491911889:338891..339828 | TCONS_00020022-exon-sc0000345-1491911889:338891..339828 | Clytia hemisphaerica | exon |
| TCONS_00020022-exon-sc0000345-1510915933:338891..339828 | TCONS_00020022-exon-sc0000345-1510915933:338891..339828 | Clytia hemisphaerica | exon |
| TCONS_00020022-exon-sc0000345-1575043694:338891..339828 | TCONS_00020022-exon-sc0000345-1575043694:338891..339828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000345 | supercontig | sc0000345:338891..339828 . |
Blast
The following BLAST results are available for this feature:
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