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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020027 ID=TCONS_00020027|Name=TCONS_00020027|organism=Clytia hemisphaerica|type=transcript|length=3627bp
gGAAAATCTGCATAATGGACTATTGTTGACAAGAAGGAAATCAGAGgcta
ttgtttttgttttatttttgacaaaaaaggaaatttttgtcatttttcac
tCAGATATCATAAGAGTTGAAGAAGGGAAgaaggtgtaaaaaaattgaaa
atagaaGAGAAAGTACAGGAAAGGTCGTGACGTGTttggaaaaattataa
aaaacaaatcGTTGAAAGGTTCTAGTAACGTTGGAAGGAAAACATCGAGT
TCAACACATTTCAAAAGTAATTAAACCATCATTAACAAACAGAAGCACGA
ATAGCTAAAATTCAAATTGAAGACATTTCAATAATAACAATTGATTACAC
AATCATTGGAAATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGCATA
AACTACAAAGTCATTCAAATCGAACTTCTCGACGACTCAGATCTatcaag
aaatattttcaagaaaaccAAAACGAAAGAGATcttagaaaatgttttcc
aaatcaTTGATATCAtcgaaaaagaatattttggattatatttcaaaaat
ttgcaaaCGGACGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAG
CCAGATTGTCAAAGTTATGGAGCCACCATATCAACTGTACTTTGGTGTGA
AATATTTCCCCTTTGATCCTCTTTCTTTACAAGAAGACGTGACACTGTAT
ATGATGTACCTACAACTGAGACGTGatatcaaagatggcagatgtATTTG
CTCTGATCACGAAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAGAAG
CAGGCGACCACGGTCCGTCATCGGCGCACAAATATCGTCATTTCTTTGTC
AACCTTCAACAAACAACTCCTGAGCTCGAAAGAGCCGTCTTGGATATTTA
CACACACATGGGAGGGATGGATCCACCCACGTGCGAAATGAAACTGATGG
AGAAAGCACTCACAGTCACTTACTACAGTCAAGAGATCTACCACGTGCGC
TCTGATGCTCAACCGGGCCTCAAGAGGTTGACCCTCACCCTGGGTCCGAT
TGGGATCGGATTATATCAAAATTCAGTGAAGTTGGATATTTTTAATTGGA
TGGAAATTTGGAATGTTGGCTACATTAATTCCATTTTCTGGTTCCGCGTC
ATGAGAGAAGGGGAGAAAAGCAAAcataaatttcattttaataacAATAA
AACGTGCGAACACGTCTGGAAAGCTTTTCGagatttctttaatttctacA
TCCAGGAACGAAAAGTAGATCCGAAGTTAATGTGGGGCCGCCAGCCACCC
AAGGTGCAACGTCTGACATTGTTAAGCGACGCCCACACACCAGCGATGCG
ACACGCAAATGTCGTCCCAAAAATCTCTCGTGATAATTTCTCAAGCCTTA
TTGTTGATCCTGGTAACTATGGAAACCCAATAATGGCGGACCCTTATGCT
AACGGAAACAAAATTCAACTTAGCAAGCAAGATTCGGGACCCAAGTTGGT
GTTCACCTCCGACAAGACGTTGACAGGAAGCGGGCGCGGTCTCCAACAAC
AGCCAGATCAACAAGAAGCGAGAAACGGCAATCTTCAAAACATGTTTCGA
CCTCATGACGAGGCTATGTTCACGGTACCGAAACAAGGCGAACAGCCGCA
TCACGAACATGAACATCAGGGCCCACAAACAGCGGTTCTCTAAACCTTCA
TCCAATCCAACTATTCACCATTCAATGAAAACATTTACGTCAAGGATGAA
GCCAAAAGAGGAAATCTTGGTCTGTTACCTCATGGATAATCAATAACATT
GCCAATGAGCAGAAGGGCAGATAGTGTCTTTCGAAGCAGTTAGGTTCTCT
AATGGGCTCACAGAATAGTCAAAATAAACTTGATATAGAACAAAATAGAA
ttcttgacttttaacaaaggCCTTAATGGaccaaaacattcaaattaCGT
CCAGATTCTGTGTAAATAAAATCGAATGAAAATATCTTATAATAAAGTTA
TCATTATCTTGATGTAGTAAAGTATTATCTAtataaaattttcgaaaagt
taataaaaatataaacaaaaatattcctCTAGTAGTCATTATTCTTCAAA
AGGCTATGGTTTGTACTACATATGGTAGCAGTCACACAATGCATCAAAAA
TACCATATTTAATCCAGACATAGATTATGATAATTTAAATTGACTCTAAT
AACAAAATTgtagtttttataagaaagacaACGAGATACTCGTTGAAAAG
AAGAGAACTAGCAAGAAAATGCATTCAATTATCAAAGTAATGGAGAGCAT
GGGGGCCCCCTACAGGTAATAAATTTAAGCCAATTGCACTGTGGCTGCAT
CTTGGTGCTGCACAGTGATCAAAATACTTCGAAACTTATCAATGCAAATA
ATCAGTTTGGAGCGAGAAACATTCTCGAAATACATGATGTTCTCTAGGTG
ATGTTCaccatcaaaatattttgtcatcCGCAAAAAGAACAGCATATCAT
CACGTTCAACGAGGTACGACACAGAAATTATACTTAACTGCATGGCGACG
GGGAAAGCATCAAATATAGTTTTGTCTCCAGTCCCTTTTAACTGAAACCG
TTGGAAAAATGTATTTCTCTGCTCCACCGGGTCGATCTCGTTGTCACGTT
CTAAATCAATGGCTGCCATGGGAACCATGTAAACAAACGTATGAAGCTGT
TTGATCAGCCTCTTTTTCAGTAACCACGTGACTATTTGCGCATGCTCAAC
ATGCTTATCATTACATAATGGATTTCGATAGTCACCCAGGGTTAACGGAA
AGGAGAACTTTTGAAACACGTTATGAAGTGATTGTTCAGGGAATTTCTTC
GTGAATTCCTCAGAACATTTAGAATCAATTTCAGTGGGAACACTCTCAGC
AAGAACATAAATATTGCTTTCAGCTAAAGGATAGATAACAATACATTTAC
CCCAATAAATCAAATGAGCAACTATTTGAAAGATTTGTGGTAAGGAGATG
TCAGCATCTTGGCAAAGTGTTTGGAAGTTCTTGACAGGTCGGGATAAAGT
GATTAGTCGGTGTAGCACGGGAGAAGCATCGGGAGGAAGGATTTTGATGA
GGTTTGCAATCTCATTTTCTTCATGTTCATTGTCGTCATCGTCAGTGAGA
AGGAGAGTGTGGTAGGGTTTGATTCTGCGGATGTAAGTATTGAATTTTGA
TGTATCAATCATCGTCTCCCGAATCTCCGCTTTATGGATTTTGTGAGGAA
AACAGTAATTAAGACCAAGCCATCCGTTAACGTTGATGTTGACAATGCCG
TAATCACACATCGATTGGAACGCAGATACGATGTCTTTGGCCAGTTGACT
TTTTGCCAGCGTTCTTTCGTGAACGTTTTGTTCAGATTCGGGGAGGTCTT
CGATACGATCGATTTCTAAGACCATGATCTCGTGCTGGTTGGACAGATAT
CGTACcctatgatttaaaaaaagatgatGGACTCAATTATGGCTagcatt
tttggccattttagcGTTTTTCTGAATCTAAAGTTCGGACGAGAATGACA
TGTTAAGGCTTTCTACTTTTATCTAATTAAATATTTCGATTTGGCAGGGG
TATAATGGCTTCCaagctatattctca Run BLAST on NCBI transcript from alignment at sc0000348:78940..83325+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020027 ID=TCONS_00020027|Name=TCONS_00020027|organism=Clytia hemisphaerica|type=transcript|length=4386bp|location=Sequence derived from alignment at sc0000348:78940..83325+ (Clytia hemisphaerica)
gGAAAATCTGCATAATGGACTATTGTTGACAAGAAGGAAATCAGAGgcta
ttgtttttgttttatttttgacaaaaaaggaaatttttgtcatttttcac
tCAGATATCATAAGAGTTGAAGAAGGGAAgaaggtgtaaaaaaattgaaa
atagaaGAGAAAGTACAGGAAAGGTCGTGACGTGTttggaaaaattataa
aaaacaaatcGTTGAAAGGTTCTAGTAACGTTGGAAGGAAAACATCGAGT
TCAACACATTTCAAAAGTAATTAAACCATCATTAACAAACAGAAGCACGA
ATAGCTAAAATTCAAATTGAAGACATTTCAATAATAACAATTGATTACAC
AATCATTGGAAATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGCATA
AACTACAAAGTCATTCAAATCGAACTTCTCGACGACTCAGATCTatcaag
aaatattttcaagaaaaccAAAACGAAAGAGATcttagaaaatgttttcc
aaatcaTTGATATCAtcgaaaaagaatattttggattatatttcaaaaat
ttgcaaaCGGACGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAG
CCAGATTGTCAAAGTTATGGAGCCACCATATCAACTGTACTTTGGTGTGA
AATATTTCCCCTTTGATCCTCTTTCTTTACAAGAAGACGTGACACTGTAT
ATGATGTACCTACAACTGAGACGTGatatcaaagatggcagatgtATTTG
CTCTGATCACGAAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAGAAG
CAGGTAGGGTCTTTCCCTTATAAGTTTTTCTATATAAACACAAAACTTCA
TAATTTGAGTCCATTCCCAGTATACACGATTCTTCTTAACTTTCCAATCA
ACGTTTCATGTGTAGATCAAGCAAACATCCCTCTCAcggtaattaaaaaa
aaatcagggGATGTAGATTAGACAGACAACATATATTTGATGATTTTCCC
ATAATGCATTTCAGGCGACCACGGTCCGTCATCGGCGCACAAATATCGTC
ATTTCTTTGTCAACCTTCAACAAACAACTCCTGAGCTCGAAAGAGCCGTC
TTGGATGTAAGTATAATAGATCAATTCGGGGCATCCTTTTCACAGCAAGT
TATAGATTCAGAGCATCCCCTTCTCAcggacccggtaggattttttagcc
agtgggggtaaaattaacagaccaaaactcgatggggattgatattccca
tgtttttgaTGGCtcgggatttgaattccattgttttcgagtcaCAGTGG
GAATGGAAGAATAgccacaatattttgcagtgagctTTTGCTTATCTCAT
TATTTTCGACGGAGACAAaaaatggaatataattttacgggagacgatat
tttggccaatttttccagtgggaaggattcccagttggtctgtgagaagg
gggtgtgttaTAAAAAACAAGCGAATTTAACCAAAGTTCTTATTCCTGAA
GAGTTAAAAACTGGAAGCTCCGAGCCTAAGTAAAAGCAAAATATGTCAAC
ATGTAGCCTGAATGTCGTATACTAACCCATCTTCAATTTTTCTCTTGGTC
AGATTTACACACACATGGGAGGGATGGATCCACCCACGTGCGAAATGAAA
CTGATGGAGAAAGCACTCACAGTCACTTACTACAGTCAAGAGATCTACCA
CGTGCGCTCTGATGCTCAACCGGGCCTCAAGAGGTTGACCCTCACCCTGG
GTCCGATTGGGATCGGATTATATCAAAATTCAGTGAAGTTGGATATTTTT
AATTGGATGGAAATTTGGAATGTTGGCTACATTAATTCCATTTTCTGGTT
CCGCGTCATGAGAGAAGGGGAGAAAAGCAAAcataaatttcattttaata
acAATAAAACGTGCGAACACGTCTGGAAAGCTTTTCGagatttctttaat
ttctacATCCAGGAACGAAAAGTAGATCCGAAGTTAATGTGGGGCCGCCA
GCCACCCAAGGTGCAACGTCTGACATTGTTAAGCGACGCCCACACACCAG
CGATGCGACACGCAAATGTCGTCCCAAAAATCTCTCGTGATAATTTCTCA
AGCCTTATTGTTGATCCTGGTAACTATGGAAACCCAATAATGGCGGACCC
TTATGCTAACGGAAACAAAATTCAACTTAGCAAGCAAGATTCGGGACCCA
AGTTGGTGTTCACCTCCGACAAGACGTTGACAGGAAGCGGGCGCGGTCTC
CAACAACAGCCAGATCAACAAGAAGCGAGAAACGGCAATCTTCAAAACAT
GTTTCGACCTCATGACGAGGCTATGTTCACGGTACCGAAACAAGGCGAAC
AGCCGCATCACGAACATGAACATCAGGGACCACAGACAGCGGTTCTCTAA
ACNGCCGCATCATGAACAGGAACATCAGGGCCCACAAACAGCGGTTCTCT
AAACCTTCATCCAATCCAACTATTCACCATTCAATGAAAACATTTACGTC
AAGGATGAAGCCAAAAGAGGAAATCTTGGTCTGTTACCTCATGGATAATC
AATAACATTGCCAATGAGCAGAAGGGCAGATAGTGTCTTTCGAAGCAGTT
AGGTTCTCTAATGGGCTCACAGAATAGTCAAAATAAACTTGATATAGAAC
AAAATAGAAttcttgacttttaacaaaggCCTTAATGGaccaaaacattc
aaattaCGTCCAGATTCTGTGTAAATAAAATCGAATGAAAATATCTTATA
ATAAAGTTATCATTATCTTGATGTAGTAAAGTATTATCTAtataaaattt
tcgaaaagttaataaaaatataaacaaaaatattcctCTAGTAGTCATTA
TTCTTCAAAAGGCTATGGTTTGTACTACATATGGTAGCAGTCACACAATG
CATCAAAAATACCATATTTAATCCAGACATAGATTATGATAATTTAAATT
GACTCTAATAACAAAATTgtagtttttataagaaagacaACGAGATACTC
GTTGAAAAGAAGAGAACTAGCAAGAAAATGCATTCAATTATCAAAGTAAT
GGAGAGCATGGGGGCCCCCTACAGGTAATAAATTTAAGCCAATTGCACTG
TGGCTGCATCTTGGTGCTGCACAGTGATCAAAATACTTCGAAACTTATCA
ATGCAAATAATCAGTTTGGAGCGAGAAACATTCTCGAAATACATGATGTT
CTCTAGGTGATGTTCaccatcaaaatattttgtcatcCGCAAAAAGAACA
GCATATCATCACGTTCAACGAGGTACGACACAGAAATTATACTTAACTGC
ATGGCGACGGGGAAAGCATCAAATATAGTTTTGTCTCCAGTCCCTTTTAA
CTGAAACCGTTGGAAAAATGTATTTCTCTGCTCCACCGGGTCGATCTCGT
TGTCACGTTCTAAATCAATGGCTGCCATGGGAACCATGTAAACAAACGTA
TGAAGCTGTTTGATCAGCCTCTTTTTCAGTAACCACGTGACTATTTGCGC
ATGCTCAACATGCTTATCATTACATAATGGATTTCGATAGTCACCCAGGG
TTAACGGAAAGGAGAACTTTTGAAACACGTTATGAAGTGATTGTTCAGGG
AATTTCTTCGTGAATTCCTCAGAACATTTAGAATCAATTTCAGTGGGAAC
ACTCTCAGCAAGAACATAAATATTGCTTTCAGCTAAAGGATAGATAACAA
TACATTTACCCCAATAAATCAAATGAGCAACTATTTGAAAGATTTGTGGT
AAGGAGATGTCAGCATCTTGGCAAAGTGTTTGGAAGTTCTTGACAGGTCG
GGATAAAGTGATTAGTCGGTGTAGCACGGGAGAAGCATCGGGAGGAAGGA
TTTTGATGAGGTTTGCAATCTCATTTTCTTCATGTTCATTGTCGTCATCG
TCAGTGAGAAGGAGAGTGTGGTAGGGTTTGATTCTGCGGATGTAAGTATT
GAATTTTGATGTATCAATCATCGTCTCCCGAATCTCCGCTTTATGGATTT
TGTGAGGAAAACAGTAATTAAGACCAAGCCATCCGTTAACGTTGATGTTG
ACAATGCCGTAATCACACATCGATTGGAACGCAGATACGATGTCTTTGGC
CAGTTGACTTTTTGCCAGCGTTCTTTCGTGAACGTTTTGTTCAGATTCGG
GGAGGTCTTCGATACGATCGATTTCTAAGACCATGATCTCGTGCTGGTTG
GACAGATATCGTACcctatgatttaaaaaaagatgatGGACTCAATTATG
GCTagcatttttggccattttagcGTTTTTCTGAATCTAAAGTTCGGACG
AGAATGACATGTTAAGGCTTTCTACTTTTATCTAATTAAATATTTCGATT
TGGCAGGGGTATAATGGCTTCCaagctatattctca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00020027-exon-sc0000348-1491911889:78940..79742 | TCONS_00020027-exon-sc0000348-1491911889:78940..79742 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1510915933:78940..79742 | TCONS_00020027-exon-sc0000348-1510915933:78940..79742 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1575043694:78940..79742 | TCONS_00020027-exon-sc0000348-1575043694:78940..79742 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1491911889:79954..80045 | TCONS_00020027-exon-sc0000348-1491911889:79954..80045 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1510915933:79954..80045 | TCONS_00020027-exon-sc0000348-1510915933:79954..80045 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1575043694:79954..80045 | TCONS_00020027-exon-sc0000348-1575043694:79954..80045 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1491911889:80542..81310 | TCONS_00020027-exon-sc0000348-1491911889:80542..81310 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1510915933:80542..81310 | TCONS_00020027-exon-sc0000348-1510915933:80542..81310 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1575043694:80542..81310 | TCONS_00020027-exon-sc0000348-1575043694:80542..81310 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1491911889:81363..83325 | TCONS_00020027-exon-sc0000348-1491911889:81363..83325 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1510915933:81363..83325 | TCONS_00020027-exon-sc0000348-1510915933:81363..83325 | Clytia hemisphaerica | exon |
| TCONS_00020027-exon-sc0000348-1575043694:81363..83325 | TCONS_00020027-exon-sc0000348-1575043694:81363..83325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:78940..83325 + |
Blast
BLAST of TCONS_00020027 vs. Swiss-Prot (Human)
Match: NPRL3 (GATOR complex protein NPRL3 OS=Homo sapiens GN=NPRL3 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 2.396e-65 Identity = 137/411 (33.33%), Postives = 220/411 (53.53%), Query Frame = -2
Query: 2349 RVRYLSNQHEIMVL---EIDRIEDLPESEQNVHERTLAKSQLAKDIVSAFQSMCDYGIVNINVNGWLGLNYCFPHKIHKAEIRETMIDTSKFNTYIRRIKPYXXXXXXXXXXXXXXXXEIANLIKILPPDASPVLHRLITLSRPVKNFQTLCQDADISLPQIFQIVAHLIYWGKCIVIYPLAESNIYVLAESVPTEIDSKCSEEFTKKFPEQSLHNVFQKFSFPLTLGDYRNPLCND-KHVEHAQIVTWLLKKRLIKQLHTFVYMVPMAAIDLERDNEID----------------------PVEQRNTFF-------QRFQLKGTGD--------KTIFDAFPVAMQLSIISVSYLVERDDMLFFLRMTKYFDGEHHLENIMYFENVSRSKLIICIDKFRSILITVQHQD 3458
R +YL+ + ++++ E+ + D E Q+ L K +LA+D+ A+ S+C G+V +++N WL +++C PHKIH A ++I ++ I+PYH LLL D+ +L+ LP D SP L R+I + VKN Q L QDAD++L Q+FQ+ AHL+YWGK I+IYPL E+N+Y+L+ + + S +E+F+ +FP L +V KFS P++L ++RNPL + + Q+V W+L++RL+ QLHT+V ++ + + R E D P + +L +GD + + + + +I+SV +D+ F R+ YF G HHLE IMY EN RS+L++ DKFRS+L+ H+D
Sbjct: 159 RCQYLTREAKLILALQDEVSAMADGNEGPQSPFHHILPKCKLARDLKEAYDSLCTSGVVRLHINSWLEVSFCLPHKIHYAA--SSLIPPEAIERSLKAIRPYHALLLLSDEK---------SLLGELPIDCSPALVRVIKTTSAVKNLQQLAQDADLALLQVFQLAAHLVYWGKAIIIYPLCENNVYMLSPNASVCLYSPLAEQFSHQFPSHDLPSVLAKFSLPVSLSEFRNPLAPAVQETQLIQMVVWMLQRRLLIQLHTYVCLMASPSEEEPRPREDDVPFTARVGGRSLSTPNALSFGSPTSSDDMTLTSPSMDNSSAELLPSGDSPLNQRMTENLLASLSEHERAAILSVPAAQNPEDLRMFARLLHYFRGRHHLEEIMYNENTRRSQLLMLFDKFRSVLVVTTHED 558
The following BLAST results are available for this feature:
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