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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020033 ID=TCONS_00020033|Name=TCONS_00020033|organism=Clytia hemisphaerica|type=transcript|length=5476bpRun BLAST on NCBI protein sequence of TCONS_00020033-protein >TCONS_00020033-protein ID=TCONS_00020033-protein|Name=TCONS_00020033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1117bp MKKFAGIRRIVDQLQTNTQTDGPTEPEPDINDRLTGDKFTLSKVARYGFPRun BLAST on NCBI transcript from alignment at sc0000348:111399..138567+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020033 ID=TCONS_00020033|Name=TCONS_00020033|organism=Clytia hemisphaerica|type=transcript|length=27169bp|location=Sequence derived from alignment at sc0000348:111399..138567+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000348:111399..138567+ >TCONS_00020033 ID=TCONS_00020033|Name=TCONS_00020033|organism=Clytia hemisphaerica|type=CDS|length=80496bp|location=Sequence derived from alignment at sc0000348:111399..138567+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020033 vs. Swiss-Prot (Human)
Match: STB5L (Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=1 SV=2) HSP 1 Score: 683.33 bits (1762), Expect = 0.000e+0 Identity = 419/1160 (36.12%), Postives = 648/1160 (55.86%), Query Frame = 1
Query: 163 DINDRLTGDKFTLSKVARYGFPYHPTCLAIDSVQKLLAIGTATGAIRICGRPGVECHVYHETNVSVTHLQFLINEGGLVSVCNDASLHIWSLRQKQPALIQSLNFKKEKITAIHNPFLSKWLYVGTERGNTYMVHVESFKVSGYVISWNHVIDVSCKTHPGPVTQIQSNPQDSNKLLLNFESGVCVVWDLRSKKIFQSYSLEQSSQYVTCATWHMEGRQFMTGHWDGSLSTWNYKNGKKPEEKQMPHATNKTGGNHNTTICCPILKLEWLASKQGELPITIFSGGMPYGN--KNKGLTVMKGRSKSLL-LSEQVIDFQCLLGSPWPTEHPDPQALIVLLRNEIVIFDLVGPVSPAPSWFSLPYTFDIHESPVTCISFLPECPNDLVMALHLMVTQKENPNQSKRPWPLTGGQDGEIGQD-PTIIITGHSDGTIKFWDATSNMLIPCHKVSIARLFDRTMSRQXXXXXXXXXXXXVEHYDDPFAVQHLCFCPYSRLLSVVTTSFLIITFQFSNKENIIEAPRLEINFSIETGVECNDSPTELLSNSFNDQSNLTKSS-----SDNRLAVSSAPVSYHPPF--RSVGVKWPIGFQPSLICKQ--VANEPMPNIISLAQSSSYGLIAFGSSIGVAVVDYVRHCTVMVCMTDEL----------------------------GVQGEWTELS--IPAAVKTPLHQTKSNPLSPNL----SESRDLFNGDISD--RKKFHTDRRKGDHRNSKIDR--------KEEHSKLGKRTSLHSTSSWNGKDTEDGQTLSPIVAPAAGSIQAL---MFGSTYTRKNGGVQCPSLWVGTSLGTVALVALSVP-TQEQRLSQPVLSNCTGTVLNHNHCVLDITLMDRCGNIVMPPFNFWRDKDSANPDANR--------TNISNLNVETNAKQHVAVTTEKQIKVRTLPTFKTLHAVEPVIGDHFIVKADTMIVEGGNCISCLNTDGHIKIYSLPSLRPLLDVECGISLADYRMIRTFTVGKGGEATFLTTPTEIQRIAFTKEKEESFVDGYGCLFKLCGLPEQRPKGFIESFFTSAPSSLDREELFGDKSGNSGSR-VAEYIPGRG-MSHLQQQVENSNDVISRAKMALIERGEKLSVLEDKTAAMNENXXXXXXXXXXXXDKFQKKKWYQW 3429
+I + LT + F + K R+GFP+ PT LA D VQK+LAIGT TGAIRI GRPGV+C+ HE+ +V LQFLINEG LVS +D +LH+W+LRQK+PA++ SL F +E+IT H PF SKWLYVGTERGNT++V++ESF +SGYVI WN I++S KTHPGPV + +P+D KLL+ +E+G V WDL+SK+ +++ + WH EG+QFM H DGSL+ WN K+ +P + +PH ++ G + + C PILK+E+ K E P IFSGG+ Y + LT+M G++ ++L + +++F L +P+P E +P A++VLL ++++ DL P F PY DIHESPVTC ++ +CP DL++ L+ + + + S + WP++GG Q P IIITGH+DG+IKFWDA++ L +K+ +++F++ + T + + +DPFA+Q + +CP SR+ V S +I ++FS E E LE+ ++ VE +P S F D S SS S N +A P ++ V+ P G+Q L+ + V EP I SLA SS+YG++AFG+ G+AVVD+++ ++ T +L G+ + +L+ I + ++ L + +P+ L S + D NG + + + +R SK++R ++ S SL T+ N +++ + S I + S +A+ F ++ RKN P L+VGTSLG V +++L++P EQR ++PV+ +GT L+ VL + MDR G ++ PP+ WRD + N D N N S+ + E Q+ + +EKQ KV +LP+ L+ V + FI++A+ +++ C++C +GHI I SLPSLRP+LDV + L D R+ RTF G+A +L +PTEIQR+ +++E ++ D G LF PE + +GF++ F + + DREELFG+ S SR +A++IPG G + ++ ++RA++AL ERG++L LE+KTA M +A +++ A L K++ KKWYQ+
Sbjct: 49 EIQETLTSEYFQICKTVRHGFPHQPTALAFDPVQKILAIGTRTGAIRILGRPGVDCYCQHESGAAVLQLQFLINEGALVSASSDDTLHLWNLRQKRPAILHSLKFNRERITYCHLPFQSKWLYVGTERGNTHIVNIESFILSGYVIMWNKAIELSTKTHPGPVVHLSDSPRDEGKLLIGYENGTVVFWDLKSKRAELRVYYDEA---IHSIDWHHEGKQFMCSHSDGSLTLWNLKSPSRPFQTTIPHGKSQREGRKSES-CKPILKVEYKTCKNSE-PFIIFSGGLSYDKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVLLEKDLIVVDLTQSNFPI---FENPYPMDIHESPVTCTAYFADCPPDLILVLYSIGVKHKKQGYSNKEWPISGGAWNLGAQTYPEIIITGHADGSIKFWDASAITLQMLYKLKTSKVFEKQKVGEGKQTCEIVE-------EDPFAIQMIYWCPESRIFCVSGVSAYVIIYKFSRHEITTEIVSLEVR--LQYDVEDIITPEPETSPPFPDLSAQLPSSRSLSGSTNTVASEGVTKDSIPCLNVKTRPVRMPPGYQAELVIQLVWVDGEPPQQITSLAVSSAYGIVAFGNCNGLAVVDFIQKTVLLSMGTIDLYRSSDLYQRQPRSPRKNKQFIADNFCMRGLSNFYPDLTKRIRTSYQS-LTELNDSPVPLELERCKSPTSDHVNGHCTSPTSQSCSSGKRLSSADVSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENRENSYNRSRSSSISSIDKDSKEAITALYFMDSFARKNDSTISPCLFVGTSLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDRMGGLMQPPYEVWRDPN--NIDENEKSWRRKVVMNSSSASQEIGDHQYTIICSEKQAKVFSLPSQTCLY-VHNITETSFILQANVVVMCSSACLACFCANGHIMIMSLPSLRPMLDVNY-LPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQDMLGDLFTPIETPEAQNRGFLKGLFGGSGQTFDREELFGEASAGKASRSLAQHIPGPGSIEGMKGAAGGVMGELTRARIALDERGQRLGELEEKTAGMMTSAEAFSKHAHELMLKYKDKKWYQF 1186 The following BLAST results are available for this feature:
BLAST of TCONS_00020033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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