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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020040 ID=TCONS_00020040|Name=TCONS_00020040|organism=Clytia hemisphaerica|type=transcript|length=2674bp
GTAGAATATGATATGATTAGAGAAaggagaaattcaaaaatttctccATT
AATTATAAATAGTTcagtaaaaatagaaaaagaaaaaaaagaaaaaacct
ttAGCGTCCATCGTGCGATAAAAACTTTGTTTCTTCAGAAAAAAACGTCC
ATCTTCATCGAATTCTTCAGTGAAATACTTTGAAAGTATGGCTTTAAAAT
TTAAAgggatttgttttcaaaaccatAATCGActtttgtttttctgcttg
AAGAAAACACTTTACTCTTTTATCGCATTTGCTTGAAAACTGAAAGCTAT
ACTTTGAAGTAATTTCCTCTTTCAGTTAACAATCACACTCAATTTTTCGC
ATGTCAGTTTTCCTTCTGATGTTGCTTACAATTAAAAGATCTAGAAAATT
GTGGTCCACTGACTACTTGGTGTGgacttttcaaaataaaaacaacactT
CGAACTTCCACATTCTAGCTCACGTTTCGCGCGCGAAATTTTGGTCAACT
TTTGGTGATAAATCGTGATATTTTTTACTCAATCTGCGTATCATGCCCAA
GCGATTGTGTCCATTTAATGGTAGTGAACCTTTAGTAAAAGCTCATATCG
ATATGCGTCATGTTGGTAAGGAGGAATATGTCAAGGAAGTTCATCACAAA
ACCACTAAAATGCTTCTTGATGGAGCCAGACAAGCAAGACGTGAAGAATT
AAAATCACAACAAATgcaagaacaaaagaaaacagaatCTCACAGGGGTA
AGATTAACATTGGCCCTGTATTCAAAGTTCTCAAGGAGAAGTCTGGGTGT
TACTTTTGTAAACATAACGATATGGTTTCAAGAAACAACAATTCTGACAC
CAACAAGGTGATGATAGACAATCTGAACACTTGCTCTTACTGTAATAAAA
ACATTTGCCACAATACATGCAGCAATATCTGCACAAATTGTCAATTTATC
TTTTGCCCCAGTTGTTGTGAGATGAAATATGGTCATTTTGAAGATGCAGT
TTTTTGTGTCAACTGTTTGGATTTTCGAATGGAATGATANTGAAGATGCA
GTTTTTTGTGTCAACTGTCTGGATTTTCGAATGGAATGATAGTATTCCCC
ATGGCCAGGTTTGGTTTCATGTGGTTTCATTTTTACCTGAATTGCACATG
ATATTGTGTCATCAAGCAAGACACTCTGAGGTGAGGTTCTactaaaaaag
ataaattaatAGGAAAACAATTCTAGTGGATGTTGACACGGCTGGGGACA
CTGTATGTATTCACTTTTAGAAGCGCAACCAACAGACAGAACCCCAAGAT
ATAACTGCTACGTAGTATATCAAAAACTCATAATCCAAGTTTATCAGAAC
TTGACCTTGCCTTTTGAAAGATTGGAACCAAACACAAAGAATAGCACAAT
AACATACTTATCTTCCAAAGAAAGTTctctaaaataaagaaaaaggagAG
TAGCTGAACCTTAAATGGGAAATAccactaaaaatttgaaaatgaaaagt
cCTAGGCTCCATATGGAAGGAAGTAAAGGGCAAAATTTATTAACAGACAA
TTACTGATGTCAAAAGGTTGATAGATTAAATTGCAATTTTGCTGTCAGAT
TCCTTTCTATGTTAATAGATTGTGTTTTATGTCAGAcaaagaaatagaaa
atcttGTTTGGTGTTTGCAACAAAATACTGTGAAggcaggtaacttgcat
cagtgaaggctaacatgcatagccctcgaatgaatgacctggctggtcct
taaaatacaaagttaaataaaaataaaaatggtggAGTAGAGCTGCGACc
tgagctgcgtagttcatttatttagaaattttgctgctttgattggtctc
atctgagggctatgcatgttagcctccactgatACTGTCACCGTTCTAAA
AACCAGCAATGTACCATTCACCACTACTCCCATTCACAGGTGACATTCTG
TTGACTGTTGAAAGATGTTTTGTAATGAAAGTTAGTTTGACAGTATTCAA
ATTAGGTTGCATTCAACAATCAAATTTTAGTGACAAAGAAGAATTATGCT
TTGATTCAATAGCTGATTGACATAGTTtgggaaatttattttataatatC
CTTATATTTGTAATTGTTTCTGAAGATTttcaaactaatcaaacttttaA
ATACTGTTTAGTTTTGTTAAAATTCTAATTTAATTTTGTTGGCAATGGCA
TCGTAGTATTGCTGAAACTGTAGCCTCACCtcccttggaaaaaaatgttt
cctgTCATCACAACTTTTCTTGGGCCTGCTTGGGCAGCTTGGTGATAATG
ATAATGATATACAAATTTTTTCAGggaggtttttgtttttattatggAAA
AAAGATCTTGGATAGTTTTATCAATATGCGAGAtaaaagtttttattgaa
atattattttatttttagtttctcttgtaaatataaaaaacaaatatttt
ttgcttgagCACCATTGTGAATAGATATCTACAATAAATCTAATTTGAGC
TGTACTTTTTTCGAATTTGAAGAATGAGGTCAATTAAAGTTACCTAATAT
ACTAGACAGAGATgcaaatatttgattttcaccatTGTTCTGACTTATAG
ACCAGCGACtgaggtagtgaattgtgttACTttgtagggcaccccttaga
tcagggcaaatttttgatattatg Run BLAST on NCBI protein sequence of TCONS_00020040-protein >TCONS_00020040-protein ID=TCONS_00020040-protein|Name=TCONS_00020040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MPKRLCPFNGSEPLVKAHIDMRHVGKEEYVKEVHHKTTKMLLDGARQARR
EELKSQQMQEQKKTESHRGKINIGPVFKVLKEKSGCYFCKHNDMVSRNNN
SDTNKVMIDNLNTCSYCNKNICHNTCSNICTNCQFIFCPSCCEMKYGHFE
DAVFCVNCLDFRME Run BLAST on NCBI transcript from alignment at sc0000348:200057..202763+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020040 ID=TCONS_00020040|Name=TCONS_00020040|organism=Clytia hemisphaerica|type=transcript|length=2707bp|location=Sequence derived from alignment at sc0000348:200057..202763+ (Clytia hemisphaerica)
GTAGAATATGATATGATTAGAGAAaggagaaattcaaaaatttctccATT
AATTATAAATAGTTcagtaaaaatagaaaaagaaaaaaaagaaaaaacct
ttAGCGTCCATCGTGCGATAAAAACTTTGTTTCTTCAGAAAAAAACGTCC
ATCTTCATCGAATTCTTCAGTGAAATACTTTGAAAGTATGGCTTTAAAAT
TTAAAgggatttgttttcaaaaccatAATCGActtttgtttttctgcttg
AAGAAAACACTTTACTCTTTTATCGCATTTGCTTGAAAACTGAAAGCTAT
ACTTTGAAGTAATTTCCTCTTTCAGTTAACAATCACACTCAATTTTTCGC
ATGTCAGTTTTCCTTCTGATGTTGCTTACAATTAAAAGATCTAGAAAATT
GTGGTCCACTGACTACTTGGTGTGgacttttcaaaataaaaacaacactT
CGAACTTCCACATTCTAGCTCACGTTTCGCGCGCGAAATTTTGGTCAACT
TTTGGTGATAAATCGTGATATTTTTTACTCAATCTGCGTATCATGCCCAA
GCGATTGTGTCCATTTAATGGTAGTGAACCTTTAGTAAAAGCTCATATCG
ATATGCGTCATGTTGGTAAGGAGGAATATGTCAAGGAAGTTCATCACAAA
ACCACTAAAATGCTTCTTGATGGAGCCAGACAAGCAAGACGTGAAGAATT
AAAATCACAACAAATgcaagaacaaaagaaaacagaatCTCACAGGGGTA
AGATTAACATTGGCCCTGTATTCAAAGTTCTCAAGGAGAAGTCTGGGTGT
TACTTTTGTAAACATAACGATATGGTTTCAAGAAACAACAATTCTGACAC
CAACAAGGTGATGATAGACAATCTGAACACTTGCTCTTACTGTAATAAAA
ACATTTGCCACAATACATGCAGCAATATCTGCACAAATTGTCAATTTATC
TTTTGCCCCAGTTGTTGTGAGATGAAATATGGTCATTTTGAAGATGCAGT
TTTTTGTGTCAACTGTTTGGATTTTCGAATGGAATGATANTGAAGATGCA
GTTTTTTGTGTCAACTGTCTGGATTTTCGAATGGAATGATAGTATTCCCC
ATGGCCAGGTTTGGTTTCATGTGGTTTCATTTTTACCTGAATTGCACATG
ATATTGTGTCATCAAGCAAGACACTCTGAGGTGAGGTTCTactaaaaaag
ataaattaatAGGAAAACAATTCTAGTGGATGTTGACACGGCTGGGGACA
CTGTATGTATTCACTTTTAGAAGCGCAACCAACAGACAGAACCCCAAGAT
ATAACTGCTACGTAGTATATCAAAAACTCATAATCCAAGTTTATCAGAAC
TTGACCTTGCCTTTTGAAAGATTGGAACCAAACACAAAGAATAGCACAAT
AACATACTTATCTTCCAAAGAAAGTTctctaaaataaagaaaaaggagAG
TAGCTGAACCTTAAATGGGAAATAccactaaaaatttgaaaatgaaaagt
cCTAGGCTCCATATGGAAGGAAGTAAAGGGCAAAATTTATTAACAGACAA
TTACTGATGTCAAAAGGTTGATAGATTAAATTGCAATTTTGCTGTCAGAT
TCCTTTCTATGTTAATAGATTGTGTTTTATGTCAGAcaaagaaatagaaa
atcttGTTTGGTGTTTGCAACAAAATACTGTGAAggcaggtaacttgcat
cagtgaaggctaacatgcatagccctcgaatgaatgacctggctggtcct
taaaatacaaagttaaataaaaataaaaatggtggAGTAGAGCTGCGACc
tgagctgcgtagttcatttatttagaaattttgctgctttgattggtctc
atctgagggctatgcatgttagcctccactgatgcaagttacctgacttc
acggtatGAAAGTTAGACTGTCACCGTTCTAAAAACCAGCAATGTACCAT
TCACCACTACTCCCATTCACAGGTGACATTCTGTTGACTGTTGAAAGATG
TTTTGTAATGAAAGTTAGTTTGACAGTATTCAAATTAGGTTGCATTCAAC
AATCAAATTTTAGTGACAAAGAAGAATTATGCTTTGATTCAATAGCTGAT
TGACATAGTTtgggaaatttattttataatatCCTTATATTTGTAATTGT
TTCTGAAGATTttcaaactaatcaaacttttaAATACTGTTTAGTTTTGT
TAAAATTCTAATTTAATTTTGTTGGCAATGGCATCGTAGTATTGCTGAAA
CTGTAGCCTCACCtcccttggaaaaaaatgtttcctgTCATCACAACTTT
TCTTGGGCCTGCTTGGGCAGCTTGGTGATAATGATAATGATATACAAATT
TTTTCAGggaggtttttgtttttattatggAAAAAAGATCTTGGATAGTT
TTATCAATATGCGAGAtaaaagtttttattgaaatattattttattttta
gtttctcttgtaaatataaaaaacaaatattttttgcttgagCACCATTG
TGAATAGATATCTACAATAAATCTAATTTGAGCTGTACTTTTTTCGAATT
TGAAGAATGAGGTCAATTAAAGTTACCTAATATACTAGACAGAGATgcaa
atatttgattttcaccatTGTTCTGACTTATAGACCAGCGACtgaggtag
tgaattgtgttACTttgtagggcaccccttagatcagggcaaatttttga
tattatg Coding sequence (CDS) from alignment at sc0000348:200057..202763+ >TCONS_00020040 ID=TCONS_00020040|Name=TCONS_00020040|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000348:200057..202763+ (Clytia hemisphaerica)
ATGCCCAAGCGATTGTGTCCATTTAATGGTAGTGAACCTTTAGTAAAAGC
TCATATCGATATGCGTCATGTTGGTAAGGAGGAATATGTCAAGGAAGTTC
ATCACAAAACCACTAAAATGCTTCTTGATGGAGCCAGACAAGCAAGACGT
GAAGAATTAAAATCACAACAAATgcaagaacaaaagaaaacagaatCTCA
CAGGGGTAAGATTAACATTGGCCCTGTATTCAAAGTTCTCAAGGAGAAGT
CTGGGTGTTACTTTTGTAAACATAACGATATGGTTTCAAGAAACAACAAT
TCTGACACCAACAAGGTGATGATAGACAATCTGAACACTTGCTCTTACTG
TAATAAAAACATTTGCCACAATACATGCAGCAATATCTGCACAAATTGTC
AATTTATCTTTTGCCCCAGTTGTTGTGAGATGAAATATGGTCATTTTGAA
GATGCAGTTTTTTGTGTCAACTGTTTGGATTTTCGAATGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020040-exon-sc0000348-1491911889:200057..201939 | TCONS_00020040-exon-sc0000348-1491911889:200057..201939 | Clytia hemisphaerica | exon |
| TCONS_00020040-exon-sc0000348-1510915933:200057..201939 | TCONS_00020040-exon-sc0000348-1510915933:200057..201939 | Clytia hemisphaerica | exon |
| TCONS_00020040-exon-sc0000348-1575043694:200057..201939 | TCONS_00020040-exon-sc0000348-1575043694:200057..201939 | Clytia hemisphaerica | exon |
| TCONS_00020040-exon-sc0000348-1491911889:201973..202763 | TCONS_00020040-exon-sc0000348-1491911889:201973..202763 | Clytia hemisphaerica | exon |
| TCONS_00020040-exon-sc0000348-1510915933:201973..202763 | TCONS_00020040-exon-sc0000348-1510915933:201973..202763 | Clytia hemisphaerica | exon |
| TCONS_00020040-exon-sc0000348-1575043694:201973..202763 | TCONS_00020040-exon-sc0000348-1575043694:201973..202763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000348 | supercontig | sc0000348:200057..202763 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR022773 | Siva_cd27-bd |
Blast
The following BLAST results are available for this feature:
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