Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020056 ID=TCONS_00020056|Name=TCONS_00020056|organism=Clytia hemisphaerica|type=transcript|length=1784bpRun BLAST on NCBI protein sequence of TCONS_00020056-protein >TCONS_00020056-protein ID=TCONS_00020056-protein|Name=TCONS_00020056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp STYDEDNSVNKTRMPRNCDFYRMITFVPIFFTIIGSNGAEFMFLLKGHEDRun BLAST on NCBI transcript from alignment at sc0000348:9544..14652- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020056 ID=TCONS_00020056|Name=TCONS_00020056|organism=Clytia hemisphaerica|type=transcript|length=5109bp|location=Sequence derived from alignment at sc0000348:9544..14652- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000348:9544..14652- >TCONS_00020056 ID=TCONS_00020056|Name=TCONS_00020056|organism=Clytia hemisphaerica|type=CDS|length=10962bp|location=Sequence derived from alignment at sc0000348:9544..14652- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020056 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1) HSP 1 Score: 601.282 bits (1549), Expect = 0.000e+0 Identity = 288/382 (75.39%), Postives = 324/382 (84.82%), Query Frame = 3 Query: 84 PIFFTIIGSNGAEFMFLLKGHEDLRQDERVMQLFGLVNTLLANDSVTFKRHLSIQRYPVIPLSTNSGLIGWVPHSDTLHTLIRDYREKKKIMLNIEHRIMLKMTPDYEHLTLIQKVEVFEHALNTTQGDDLAKVLWLKSPSSEVWYDRRLNYTRSLAVMSMVGYVLGLGDRHPSNLMLDRMSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGIDGNYRMTCESVMRVLRENKDSLMAVLEAFVYDPLLNWRLIDT----EKRSKGRQESYSTHNEGHEFQDNVDRTHDRPRGKKVTNPEHPTQDPEHSNNKPEAVNKRALQIVNRVRDKLTGRDFNKDEAIDVDTQVDLLIQQATSHANLCQAYIGWCPFW 1217 P T++GSNG EF+FLLKGHEDLRQDERVMQLFGLVNTLLAND + +++LSIQRY VIPLSTNSGLIGWVPH DTLH LIRDYREKKKI+LNIEHRIML+M PDY+HLTL+QKVEVFEHA+N T GDDLAK+LWLKSPSSEVW+DRR NYTRSLAVMSMVGY+LGLGDRHPSNLMLDR+SGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTG+DGNYR+TC +VM VLRE+KDS+MAVLEAFVYDPLLNWRL+DT KRS+ R +SYS + E D V+ + T PE KPEA+NK+A+QI+NRVRDKLTGRDF+ D+ +DV TQV+LLI+QATSH NLCQ YIGWCPFW Sbjct: 2169 PRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKKKILLNIEHRIMLRMAPDYDHLTLMQKVEVFEHAVNNTAGDDLAKLLWLKSPSSEVWFDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTKGNKRSRTRTDSYSA-GQSVEILDGVELGEPAHKKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGWCPFW 2549 The following BLAST results are available for this feature:
BLAST of TCONS_00020056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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