TCONS_00020066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020066
Unique NameTCONS_00020066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020066 ID=TCONS_00020066|Name=TCONS_00020066|organism=Clytia hemisphaerica|type=transcript|length=3407bp
cataatatcaaaaatttgccctgatctaaggggtgccctacaaAGTaaca
caattcactacctcaGTCGCTGGTCTATAAGTCAGAACAatggtgaaaat
caaatatttgcATCTCTGTCTAGTATATTAGGTAACTTTAATTGACCTCA
TTCTTCAAATTCGAAAAAAGTACAGCTCAAATTAGATTTATTGTAGATAT
CTATTCACAATGGTGctcaagcaaaaaatatttgttttttatatttacaa
gagaaactaaaaataaaataatatttcaataaaaacttttaTCTCGCATA
TTGATAAAACTATCCAAGATCTTTTTTccataataaaaacaaaaacctcc
CTGAAAAAATTTGTATATCATTATCATTATCACCAAGCTGCCCAAGCAGG
CCCAAGAAAAGTTGTGATGAcaggaaacatttttttccaagggaGGTGAG
GCTACAGTTTCAGCAATACTACGATGCCATTGCCAACAAAATTAAATTAG
AATTTTAACAAAACTAAACAGTATTtaaaagtttgattagtttgaaAATC
TTCAGAAACAATTACAAATATAAGGatattataaaataaatttcccaAAC
TATGTCAATCAGCTATTGAATCAAAGCATAATTCTTCTTTGTCACTAAAA
TTTGATTGTTGAATGCAACCTAATTTGAATACTGTCAAACTAACTTTCAT
TACAAAACATCTTTCAACAGTCAACAGAATGTCACCTGTGAATGGGAGTA
GTGGTGAATGGTACATTGCTGGTTTTTAGAACGGTGACAGTCTAACTTTC
ataccgtgaagtcaggtaacttgcatcagtggaggctaacatgcatagcc
ctcagatgagaccaatcaaagcagcaaaatttctaaataaatgaactacg
cagctcagGTCGCAGCTCTACTccaccatttttatttttatttaactttg
tattttaaggaccagccaggtcattcattcgagggctatgcatgttagcc
ttcactgatgcaagttacctgccTTCACAGTATTTTGTTGCAAACACCAA
ACaagattttctatttctttgTCTGACATAAAACACAATCTATTAACATA
GAAAGGAATCTGACAGCAAAATTGCAATTTAATCTATCAACCTTTTGACA
TCAGTAATTGTCTGTTAATAAATTTTGCCCTTTACTTCCTTCCATATGGA
GCCTAGgacttttcattttcaaatttttagtggTATTTCCCATTTAAGGT
TCAGCTACTctcctttttctttattttagagAACTTTCTTTGGAAGATAA
GTATGTTATTGTGCTATTCTTTGTGTTTGGTTCCAATCTTTCAAAAGGCA
AGGTCAAGTTCTGATAAACTTGGATTATGAGTTTTTGATATACTACGTAG
CAGTTATATCTTGGGGTTCTGTCTGTTGGTTGCGCTTCTAAAAGTGAATA
CATACAGTGTCCCCAGCCGTGTCAACATCCACTAGAATTGTTTTCCTatt
aatttatcttttttagtAGAACCTCACCTCAGAGTGTCTTGCTTGATGAC
ACAATATCATGTGCAATTCAGGTAAAAATGAAACCACATGAAACCAAACC
TGGCCATGGGGAATACTATCATTCCATTCGAAAATCCAGACAGTTGACAC
AAAAAACTGCATCTTCANTATCATTCCATTCGAAAATCCAAACAGTTGAC
ACAAAAAACTGCATCTTCAAAATGACCATATTTCATCTCACAACAACTGG
GGCAAAAGATAAATTGACAATTTGTGCAGATATTGCTGCATGTATTGTGG
CAAATGTTTTTATTACAGTAAGAGCAAGTGTTCAGATTGTCTATCATCAC
CTTGTTGGTGTCAGAATTGTTGTTTCTTGAAACCATATCGTTATGTTTAC
AAAAGTAACACCCAGACTTCTCCTTGAGAACTTTGAATACAGGGCCAATG
TTAATCTTACCCCTGTGAGattctgttttcttttgttcttgcATTTGTTG
TGATTTTAATTCTTCACGTCTTGCTTGTCTGGCTCCATCAAGAAGCATTT
TAGTGGTTTTGTGATGAACTTCCTTGACATATTCCTCCTTACCAACATGA
CGCATATCGATATGAGCTTTTACTAAAGGTTCACTACCATTAAATGGACA
CAATCGCTTGGGCATGATACGCAGATTGAGTAAAAAATATCACGATTTAT
CACCAAAAGTTGACCAAAATTTCGCGCGCGAAACGTGAGCTAGAATGTGG
AAGTTCGAagtgttgtttttattttgaaaagtcCACACCAAGTAGTCAGT
GGACCACAATTTTCTAGATCTTTTAATTGTAAGCAACATCAGAAGGAAAA
CTGACATGCGAAAAATTGAGTGTGATTGTTAACTGAAAGAGGAAATTACT
TCAAAGTATAGCTTTCAGTTTTCAAGCAAATGCGATAAAAGAGTAAAGTG
TTTTCTTcaagcagaaaaacaaaagTCGATTatggttttgaaaacaaatc
ccTTTAAATTTTAAAGCCATACTTTCAAAGTATTTCACTGAAGAATTCGA
TGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCACGATGG
ACGCTaaagCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGAT
GAAGAAATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTT
TAACGAGTTTTCTAAGCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTTG
TTTCTGGTGAAGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAAC
ATGATGTTGACAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGAA
AGAATTCGAAATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAGA
AACAAACTTTTGAATCgCCATTTCACAGAGGAATTTGGGAGAGGAATTTC
GCCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTAT
TTTTAGtaaactcaaaaatgtcattccCCATGCAAACCGCGCTCAACAAC
ATTCGCAGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAA
CAAATAAACGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCG
GTTGAAAACTTCCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCT
TCTGTTTTTTGAGAGGATTTCTTGTAGagaattttgtaaatttttcttat
tttttgtaatttataaTCTTGAATTTAATTGAGAAATAGATGAAGATTAA
AGATAAAAGATACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAA
ATCAGCTGACATCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGAcaa
attattt
Run BLAST on NCBI

protein sequence of TCONS_00020066-protein

>TCONS_00020066-protein ID=TCONS_00020066-protein|Name=TCONS_00020066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MDAKATNILEGEASESDDEEISHNTFVNKPIPKTFNEFSKPSNEGPSSGV
VVSGEASESDDEDDSTVNMMLTRNFPTLVSQQGLKEFEIQDEEGSVTIQE
QKQTFESPFHRGIWERNFALRLGIVRHNVEEYQSIFSKLKNVIPHANRAQ
QHSQETLKAYRTMGENSKQINDQLEMLLRQTDIPRLKTSFS
Run BLAST on NCBI

transcript from alignment at sc0000348:194568..202763-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020066 ID=TCONS_00020066|Name=TCONS_00020066|organism=Clytia hemisphaerica|type=transcript|length=8196bp|location=Sequence derived from alignment at sc0000348:194568..202763- (Clytia hemisphaerica)
CATAATATCAAAAATTTGCCCTGATCTAAGGGGTGCCCTACAAAGTAACA
CAATTCACTACCTCAGTCGCTGGTCTATAAGTCAGAACAATGGTGAAAAT
CAAATATTTGCATCTCTGTCTAGTATATTAGGTAACTTTAATTGACCTCA
TTCTTCAAATTCGAAAAAAGTACAGCTCAAATTAGATTTATTGTAGATAT
CTATTCACAATGGTGCTCAAGCAAAAAATATTTGTTTTTTATATTTACAA
GAGAAACTAAAAATAAAATAATATTTCAATAAAAACTTTTATCTCGCATA
TTGATAAAACTATCCAAGATCTTTTTTCCATAATAAAAACAAAAACCTCC
CTGAAAAAATTTGTATATCATTATCATTATCACCAAGCTGCCCAAGCAGG
CCCAAGAAAAGTTGTGATGACAGGAAACATTTTTTTCCAAGGGAGGTGAG
GCTACAGTTTCAGCAATACTACGATGCCATTGCCAACAAAATTAAATTAG
AATTTTAACAAAACTAAACAGTATTTAAAAGTTTGATTAGTTTGAAAATC
TTCAGAAACAATTACAAATATAAGGATATTATAAAATAAATTTCCCAAAC
TATGTCAATCAGCTATTGAATCAAAGCATAATTCTTCTTTGTCACTAAAA
TTTGATTGTTGAATGCAACCTAATTTGAATACTGTCAAACTAACTTTCAT
TACAAAACATCTTTCAACAGTCAACAGAATGTCACCTGTGAATGGGAGTA
GTGGTGAATGGTACATTGCTGGTTTTTAGAACGGTGACAGTCTAACTTTC
ATACCGTGAAGTCAGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCC
CTCAGATGAGACCAATCAAAGCAGCAAAATTTCTAAATAAATGAACTACG
CAGCTCAGGTCGCAGCTCTACTCCACCATTTTTATTTTTATTTAACTTTG
TATTTTAAGGACCAGCCAGGTCATTCATTCGAGGGCTATGCATGTTAGCC
TTCACTGATGCAAGTTACCTGCCTTCACAGTATTTTGTTGCAAACACCAA
ACAAGATTTTCTATTTCTTTGTCTGACATAAAACACAATCTATTAACATA
GAAAGGAATCTGACAGCAAAATTGCAATTTAATCTATCAACCTTTTGACA
TCAGTAATTGTCTGTTAATAAATTTTGCCCTTTACTTCCTTCCATATGGA
GCCTAGGACTTTTCATTTTCAAATTTTTAGTGGTATTTCCCATTTAAGGT
TCAGCTACTCTCCTTTTTCTTTATTTTAGAGAACTTTCTTTGGAAGATAA
GTATGTTATTGTGCTATTCTTTGTGTTTGGTTCCAATCTTTCAAAAGGCA
AGGTCAAGTTCTGATAAACTTGGATTATGAGTTTTTGATATACTACGTAG
CAGTTATATCTTGGGGTTCTGTCTGTTGGTTGCGCTTCTAAAAGTGAATA
CATACAGTGTCCCCAGCCGTGTCAACATCCACTAGAATTGTTTTCCTATT
AATTTATCTTTTTTAGTAGAACCTCACCTCAGAGTGTCTTGCTTGATGAC
ACAATATCATGTGCAATTCAGGTAAAAATGAAACCACATGAAACCAAACC
TGGCCATGGGGAATACTATCATTCCATTCGAAAATCCAGACAGTTGACAC
AAAAAACTGCATCTTCANTATCATTCCATTCGAAAATCCAAACAGTTGAC
ACAAAAAACTGCATCTTCAAAATGACCATATTTCATCTCACAACAACTGG
GGCAAAAGATAAATTGACAATTTGTGCAGATATTGCTGCATGTATTGTGG
CAAATGTTTTTATTACAGTAAGAGCAAGTGTTCAGATTGTCTATCATCAC
CTTGTTGGTGTCAGAATTGTTGTTTCTTGAAACCATATCGTTATGTTTAC
AAAAGTAACACCCAGACTTCTCCTTGAGAACTTTGAATACAGGGCCAATG
TTAATCTTACCCCTGTGAGATTCTGTTTTCTTTTGTTCTTGCATTTGTTG
TGATTTTAATTCTTCACGTCTTGCTTGTCTGGCTCCATCAAGAAGCATTT
TAGTGGTTTTGTGATGAACTTCCTTGACATATTCCTCCTTACCAACATGA
CGCATATCGATATGAGCTTTTACTAAAGGTTCACTACCATTAAATGGACA
CAATCGCTTGGGCATGATACGCAGATTGAGTAAAAAATATCACGATTTAT
CACCAAAAGTTGACCAAAATTTCGCGCGCGAAACGTGAGCTAGAATGTGG
AAGTTCGAAGTGTTGTTTTTATTTTGAAAAGTCCACACCAAGTAGTCAGT
GGACCACAATTTTCTAGATCTTTTAATTGTAAGCAACATCAGAAGGAAAA
CTGACATGCGAAAAATTGAGTGTGATTGTTAACTGAAAGAGGAAATTACT
TCAAAGTATAGCTTTCAGTTTTCAAGCAAATGCGATAAAAGAGTAAAGTG
TTTTCTTCAAGCAGAAAAACAAAAGTCGATTATGGTTTTGAAAACAAATC
CCTTTAAATTTTAAAGCCATACTTTCAAAGTATTTCACTGAAGAATTCGA
TGAAGATGGACGTTTTTTTCTGAAGAAACAAAGTTTTTATCGCACGATGG
ACGCTAAAGGTTTTTTCTTTTTTTTCTTTTTCTATTTTTACTGAACTATT
TATAATTAATGGAGAAATTTTTGAATTTCTCCTTTCTCTAATCATATCAT
ATTCTACCATAGACTCCTTTTTTTATTTGGTATATAATCATTGGCTAGTT
CAAATGCAGGTTTCACAGTCCACTACAACAGAAGAGGTCACAGACACATG
TCAACAGGTCACGGTATTTGACACAGGTCATCTTTAATTACTGTAAACTA
CAAAGGAAAATGTACTATGAAAAACACACCTTTAAACAGCCTCCTGGACA
TAACCTGAGATTAGATCGTGATTGTTTTCTGCTGACCACGCTGAATAGGA
CCCTGCCGACGCACCGGACTGTCAGGTGTATTTGTCCGGTGGCAAAAAGT
ATCCTTTCGCTACACCAGACGCAATAAGTCCGGTGTCAGTCCGGTGTTGC
ATACAGGTAATTTTGGACACCGGACATTTATGAAACAAAAAATTAAGAAA
CACCGGATGCACCGGACTGGTCATGTCCAGTGTTTAGATTGTCCGGTGAA
AAAAAATATCCTTCTCCAACACCGGACATCCGACTGACGGAGAGTAATGT
ATGTGGATTAATTTGTTATTCAATAGGCCGTTGCATTCTCCAAAACAACT
ATTTAGTTATCGACTTTCCAGTGCACAACAAGATTCTTGTTGTAGAATTT
TCCTTGGGAGGACTATTTTCAAGCACCTTTTAGAGGTTTACCATGCGCAT
TAGAAAATCATGAACAGTTGTTATCAGGTTACCTGGACAAGAAAATAGCT
GTTTCATAAGTGCTTTATCATATCCCATTACATCTCCTGCATCACCTTGG
GTATGATAACCGGACTTGATGAAAATAGCATCAAAAGGATTATATTTTAT
AGATATTTGTTTGTTTGACCTGTGTCCATGACCTTTGGCCTGCGTCTCGA
ACTAGCCAGTATAACATTTGACTGCATAAATATAACAGTAAAGCATACTA
GATTATTGCTTCTAATCCAGCTGATTGAAGGTTCTGGAAGGTTGGGTAAT
TTTCCAAAATTTGAATACAAAAGCCAAATGGACCTCCTTTAATACAACCC
ACAAAATGGCCTTACTATAGTCCTTGGTTTAGGGCCGAGTTTGGCCCAAA
ATAGCAAAACATTCTTTTTGCCTAAAAACATTGATGTTCAGGCCAATTTT
GGACCATCATAATAGGTGCATCATAAGAAGACAATCAAAGTCCACACTGT
AACAGGCTGCTATTCAGCAATGAGGAACAATCAAAAGTGGTTCATGTCAC
TTAAAATAATAGGACTTGCCTTAACTCACCTGAGGTATCTATATTAGATC
ATAGTATTCTAAGAGTCGCAGTATGCTAAGTGGTGATGTGGTAGTATGTT
AAGAGCATTACAATTTTCTCAGTGACAAATATCTTTACAGTGTTTGATTT
AGATGTCTTTTTTATTTAGATGACATCCAGTCAATTATGTGCAGTAGATT
CTTTTAAGAAATGATTTTACTTCAGTTTGTGTTATCATCAACATACATTA
GCATATGTTTTTAGCAAAGAAATTAACCCAGGTGGGAATATCGTTCACAC
TCCAAGGTATTGAATGATTTACTCACTTCTCATGTGTCATACCCTCCAAC
AAGTTCCCTAAAATATAGTTCTAAAGATCTTTCTCTTTCTTCAAACAGCG
ACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATGAAGAAATTTC
TCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTTAACGAGTTTT
CTAAGGTAAATACTAAAGTACCATGAAAATGATATTTCTTTGAAATTTGT
AACTCTTTGCCTTGCTCAAATAACTTTGTCAATTAGTTTCCTGCAATAAC
AAGATGGTCAATATTTCCACATTAACAACCATAGCCATCGAATGAGGGGC
CAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACGAA
GATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTTGT
CTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTCTG
TTACTATTCAAGAACAGAAACAAACTTTTGAATCGTAAGTGAGACACGGC
TTCAAAACTTCAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAGATTACAAAGCAAACTCTCTGCGGCATGAAAT
TTTATGCTTTCTACACATTTGGTGACCTTATTCTCGCTAACTTTGAGCTT
GCTTAGAGCAAAAATTTACTCTGAAAAAACTTTCTCTGAAAGTTTCCCCT
AAAAAAGGTCAAAATTTTTCCAATCTCGCCCCCCCCCCGAAACGAAAACT
CGTGGCTACGCCTCTGCTAGGCTTTACTCAATCCATCTCGATGAACAATG
TCGCAAATTTTTCTTGATCGCTTCGCTCGCATTTTCGGGCGCCAGAATAA
GCCTACAAGCCAAAATTTTACTTACAGTTTTACACGCTACAGTTTGGTAA
TTGTTATAGAGAATTTTGGATGATGAAAAACGCGACCTTTATCGTCCACA
CATACCAAGCACCCATTTTTGCCTAAGTACTCCCTCCGGGGGACGAGTAC
CTAAAAAATGGGGAAAAATTGATCGGTATCGGTATTTGAACGAAACAATT
ATCGGTATATCGGTAATTGAGAGAAAAAGTGATCGGTATATCGGTATTAC
GAAGTCCCGTACGCCCCCCACTTCAGAGTGATTTGTTCTATTGTTGAAAT
GTTGACACAATGTTGATATTTGAGAAAAATATTGATATCAAGACAAAAAC
ATTCAAAATATTTATTATACCGAAAGTGATGTAGATAGTGTGAATGGATA
TAAAAAGACACGAATCAGAAGCTTGTGACTTCTGTTTTAGATTGATGGCA
CATGAGGCCCGAGTTACATTGAAGAGTTACATTTAGGAGCGTTCCAGTTG
CTANTTTTGGAGTATTGAGATGAAATCAAAGTCATTTTCCCAGTGGTGCT
GAAATTCCAGGGTATGAAATTTTTGCCAAATTGTCCATTGGGGCTTGGGT
CCCAGTGGGTCTGTGACACAGGGGTGTTTGTATATACGACTTCTAAAAAT
CTTGTCTGTAATTTAATCTCACAAATCTTCTCCGTCATTTCTTTAAATTT
TTAGGCCATTTCACAGAGGAATTTGTAAGTATTGTCTTTTTGTTTCGTTT
TTTTTTTCTCATGTCTTTTCCGTGCCGATACTCACAGCGATCCGCCAATG
CAATACAGTGGATGTTGACCTTTAAAAACAACTTAATAAGCTTTAGAATA
TTTTTAAAATATTTTAAAATATCTTTCCAACTATACCAAACCTTTTATTA
TATATACCACAAATACTTGAAAGTTATGGTAAAAAAACACTGCACACCTT
TTTGCTCGGGAGGGGGCACTTAGACAAATTTTATAAAAAGAACGATGTCG
ATAGCTGAATGCTATGGGTGACTTTAACTTCATTAAAAAGAAGTATGGTA
TGGTTATAACTCTGGGTCAAAAATAGATTTTAAGATTGCAATTCTATCAA
AATGAAATCCAGTAAGTTTTATTCCACTCTGGCTGAAAAGAACTTCTGAC
AAAAAATGGAAAAATTTTTCTTATGTTTTTGCTGAAGGTGAACCTTATGT
TTTTATAAAATATGTTTGTTGTTTCAGGGGAGAGGAATTTCGCCCTTCGA
CTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGAGTATTTTTAGTAA
ACTCAAAAATGTCATTCCCCATGCAAACCGCGCTCAACAACATTCGCAGG
TAAGTAAGTTAGAGATTAATCGCTGTTGTCTCAAAACAATCACATAGTCA
TTATTTTCATGTTCTTAGCTTAATATAATGGGGTAAAATTCTGAGAAGAT
TCATTTTTGCAATTTTCTCCGATTTTGGCTTTCTTCACAAAATCCGAATT
CAAATGGAATTTTGAAAAACACTTTCACGTCTTGCAGCCTCATTTTGTTT
AGGTAAATTCATTTTTGAGCCTCAAATATGCTTACTCTCAGGTACCTAAT
AACCGTCCCCCCGCTAATTAATTTTTCGAAAATTTTCCACCCAAGACATT
GTTGCTCCAACCCCTCCCCCTCCCCGCTTATTAATTTTTGGGAAAATGTT
TTTGAAAGTTCCCTCTTTCGTCCTAGTTCTGCTGTATTAGCCTCCTTTTC
AAAAATTTTTCACCCAGGACATTTTTATTCCAACCCCCCTGCTATTAGGC
ACCCGAGAGTACGCAACGACGTAATTATTACATGTCAACATAAAGTTTCT
TCTGGAAAAACAAATTATACTGAAATGCAAATTTTTAACGAATTCAGGAG
ACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAATAAACGA
TCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGAAAACTT
CCTTCTCGTGATATACAGTGTATATGAGCCCCGTTTTCTTCTGTTTTTTG
AGAGGATTTCTTGTAGAGAATTTTGTAAATTTTTCTTATTTTTTGTAATT
TATAATCTTGAATTTAATTGAGAAATAGATGAAGATTAAAGATAAAAGAT
ACTCTCATTGGAATCTATTTTTTCTGAATACTCTTTGAAATCAGCTGACA
TCGAATGCCTTTACAGTGTATCCCAAAATAAAAGGACAAATTATTT

Coding sequence (CDS) from alignment at sc0000348:194568..202763-

>TCONS_00020066 ID=TCONS_00020066|Name=TCONS_00020066|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at sc0000348:194568..202763- (Clytia hemisphaerica)
GAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAATAAA
CGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGAAAA
CTTCCTTCTCGTGAGGGAGAGGAATTTCGCCCTTCGACTTGGCATCGTGC
GCCATAATGTGGAGGAATACCAGAGTATTTTTAGTAAACTCAAAAATGTC
ATTCCCCATGCAAACCGCGCTCAACAACATTCGCAGGCCATTTCACAGAG
GAATTTCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTTGTTTCTGGTGA
AGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAACATGATGTTGA
CAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGAAAGAATTCGAA
ATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAGAAACAAACTTT
TGAATCCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATGAA
GAAATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTTAA
CGAGTTTTCTAAGATGGACGCTAAAGGAGACGCTGAAAGCTTATCGAACG
ATGGGAGAGAATAGCAAACAAATAAACGATCAATTGGAAATGTTGTTACG
TCAGACAGATATACCTCGGTTGAAAACTTCCTTCTCGTGAGGGAGAGGAA
TTTCGCCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCAGA
GTATTTTTAGTAAACTCAAAAATGTCATTCCCCATGCAAACCGCGCTCAA
CAACATTCGCAGGCCATTTCACAGAGGAATTTCCATCGAATGAGGGGCCA
AGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACGAAGA
TGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTTGTCT
CACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTCTGTT
ACTATTCAAGAACAGAAACAAACTTTTGAATCCGACAAATATTCTTGAAG
GAGAGGCCTCAGAATCTGATGATGAAGAAATTTCTCACAACACCTTTGTC
AACAAACCTATTCCAAAAACCTTTAACGAGTTTTCTAAGATGGACGCTAA
AGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAATA
AACGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTGAA
AACTTCCTTCTCGTGAGGGAGAGGAATTTCGCCCTTCGACTTGGCATCGT
GCGCCATAATGTGGAGGAATACCAGAGTATTTTTAGTAAACTCAAAAATG
TCATTCCCCATGCAAACCGCGCTCAACAACATTCGCAGGCCATTTCACAG
AGGAATTTCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTTGTTTCTGGT
GAAGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAACATGATGTT
GACAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGAAAGAATTCG
AAATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAGAAACAAACT
TTTGAATCCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGATG
AAGAAATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCTTT
AACGAGTTTTCTAAGATGGACGCTAAAGGAGACGCTGAAAGCTTATCGAA
CGATGGGAGAGAATAGCAAACAAATAAACGATCAATTGGAAATGTTGTTA
CGTCAGACAGATATACCTCGGTTGAAAACTTCCTTCTCGTGAGGGAGAGG
AATTTCGCCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATACCA
GAGTATTTTTAGTAAACTCAAAAATGTCATTCCCCATGCAAACCGCGCTC
AACAACATTCGCAGGCCATTTCACAGAGGAATTTCCATCGAATGAGGGGC
CAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACGAA
GATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTTGT
CTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTCTG
TTACTATTCAAGAACAGAAACAAACTTTTGAATCCGACAAATATTCTTGA
AGGAGAGGCCTCAGAATCTGATGATGAAGAAATTTCTCACAACACCTTTG
TCAACAAACCTATTCCAAAAACCTTTAACGAGTTTTCTAAGATGGACGCT
AAAGGAGACGCTGAAAGCTTATCGAACGATGGGAGAGAATAGCAAACAAA
TAAACGATCAATTGGAAATGTTGTTACGTCAGACAGATATACCTCGGTTG
AAAACTTCCTTCTCGTGAGGGAGAGGAATTTCGCCCTTCGACTTGGCATC
GTGCGCCATAATGTGGAGGAATACCAGAGTATTTTTAGTAAACTCAAAAA
TGTCATTCCCCATGCAAACCGCGCTCAACAACATTCGCAGGCCATTTCAC
AGAGGAATTTCCATCGAATGAGGGGCCAAGCAGTGGTGTTGTTGTTTCTG
GTGAAGCATCAGAGAGTGATGACGAAGATGACTCAACTGTAAACATGATG
TTGACAAGAAATTTCCCAACACTTGTCTCACAGCAGGGCCTGAAAGAATT
CGAAATACAAGATGAGGAAGGCTCTGTTACTATTCAAGAACAGAAACAAA
CTTTTGAATCCGACAAATATTCTTGAAGGAGAGGCCTCAGAATCTGATGA
TGAAGAAATTTCTCACAACACCTTTGTCAACAAACCTATTCCAAAAACCT
TTAACGAGTTTTCTAAGATGGACGCTAAAGGAGACGCTGAAAGCTTATCG
AACGATGGGAGAGAATAGCAAACAAATAAACGATCAATTGGAAATGTTGT
TACGTCAGACAGATATACCTCGGTTGAAAACTTCCTTCTCGTGAGGGAGA
GGAATTTCGCCCTTCGACTTGGCATCGTGCGCCATAATGTGGAGGAATAC
CAGAGTATTTTTAGTAAACTCAAAAATGTCATTCCCCATGCAAACCGCGC
TCAACAACATTCGCAGGCCATTTCACAGAGGAATTTCCATCGAATGAGGG
GCCAAGCAGTGGTGTTGTTGTTTCTGGTGAAGCATCAGAGAGTGATGACG
AAGATGACTCAACTGTAAACATGATGTTGACAAGAAATTTCCCAACACTT
GTCTCACAGCAGGGCCTGAAAGAATTCGAAATACAAGATGAGGAAGGCTC
TGTTACTATTCAAGAACAGAAACAAACTTTTGAATCCGACAAATATTCTT
GAAGGAGAGGCCTCAGAATCTGATGATGAAGAAATTTCTCACAACACCTT
TGTCAACAAACCTATTCCAAAAACCTTTAACGAGTTTTCTAAGATGGACG
CTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011280XLOC_011280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020066-proteinTCONS_00020066-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020066-exon-sc0000348-1575043694:200155..202763TCONS_00020066-exon-sc0000348-1575043694:200155..202763Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1575043694:198359..198465TCONS_00020066-exon-sc0000348-1575043694:198359..198465Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1575043694:198030..198229TCONS_00020066-exon-sc0000348-1575043694:198030..198229Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1575043694:196090..196109TCONS_00020066-exon-sc0000348-1575043694:196090..196109Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1575043694:195465..195586TCONS_00020066-exon-sc0000348-1575043694:195465..195586Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1575043694:194568..194916TCONS_00020066-exon-sc0000348-1575043694:194568..194916Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:200155..202763TCONS_00020066-exon-sc0000348-1510915933:200155..202763Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:198359..198465TCONS_00020066-exon-sc0000348-1510915933:198359..198465Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:198030..198229TCONS_00020066-exon-sc0000348-1510915933:198030..198229Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:196090..196109TCONS_00020066-exon-sc0000348-1510915933:196090..196109Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:195465..195586TCONS_00020066-exon-sc0000348-1510915933:195465..195586Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1510915933:194568..194916TCONS_00020066-exon-sc0000348-1510915933:194568..194916Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:200155..202763TCONS_00020066-exon-sc0000348-1491911889:200155..202763Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:198359..198465TCONS_00020066-exon-sc0000348-1491911889:198359..198465Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:198030..198229TCONS_00020066-exon-sc0000348-1491911889:198030..198229Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:196090..196109TCONS_00020066-exon-sc0000348-1491911889:196090..196109Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:195465..195586TCONS_00020066-exon-sc0000348-1491911889:195465..195586Clytia hemisphaericaexon
TCONS_00020066-exon-sc0000348-1491911889:194568..194916TCONS_00020066-exon-sc0000348-1491911889:194568..194916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:194568..202763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1686	16.595	69.8092	73.4549	7.7441	5.81288	7.66886	7.07908	7.01585	6.47389	6.90962	6.13344	4.25835	4.91044	5.64428	5.17511	6.5735	7.28581	2.51265	3.41172	7.29761	6.18694	26.8916	24.6975	7.34465	8.70621	4.02696	2.85266	11.5814	12.9565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017245BLOC-1_complex_su-3
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top