TCONS_00020105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020105
Unique NameTCONS_00020105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020105 ID=TCONS_00020105|Name=TCONS_00020105|organism=Clytia hemisphaerica|type=transcript|length=471bp
GTGAATGATGCGGAAATACTGCTAGTGACAGTAGTAGTTCCATCCGAGAG
TTTCAACTTTAGCCCTTAAACTCAACGATTGCAAACCGTCAACCGCAACT
TTTCTATGAAATCCTTTCGATTGCTAAAAAAATCCCATCTTGGTTTCTTA
AAGTACATTGTCAAAAGGCTCATTGGAATGATCTCTGTTCTCTAGTTCTC
CTTTGTCACCTGAATACTTTAGTGAACACTTTCACCGGTTTATCGAAGGC
TCTCTTTCTCCGCCATGTTTCAATACCATAGTTCCCATTTTTAGTTCTCA
TAAAATAACAATCCCATGAAGAGTCTTTTAATCTGTTTATAGCGACTTGA
TTACACGATGGCTCAAATTGACATTTCATTTTACATTGGATAAAAGACCA
AACATTGATCTTCTTGCTTGAGGATATTTCATCTTGATAAACGATTCGCT
CAATGATCTTGAACTTTTGAG
Run BLAST on NCBI

transcript from alignment at sc0000349:149590..150126+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020105 ID=TCONS_00020105|Name=TCONS_00020105|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0000349:149590..150126+ (Clytia hemisphaerica)
GTGAATGATGCGGAAATACTGCTAGTGACAGTAGTAGTTCCATCCGAGAG
TTTCAACTTTAGCCCTTAAACTCAACGATTGCAAACCGTCAACCGCAACT
TTTCTATGAAATCCTTTCGATTGCTAAAAAAATCCCATCTTGGTTTCTTA
AAGTACATTGTCAAAAGGCTCATTGGAATGATCTCTGTTCTCTAGTTCTC
CTTTGTCACCTGAATACTTTAGTGAACACTTTCACCGGTTTATCGAAGGC
TCTCTTTCNAGTTCTCCTTTGTCACCTGAATACTTTAGTGAACACTTTCA
CCGGATTATCGAAGGCTCTCTTTCTCCGCCATGTTTCAATACCATAGTTC
CCATTTTTAGTTCTCATAAAATAACAATCCCATGAAGAGTCTTTTAATCT
GTTTATAGCGACTTGATTACACGATGGCTCAAATTGACATTTCATTTTAC
ATTGGATAAAAGACCAAACATTGATCTTCTTGCTTGAGGATATTTCATCT
TGATAAACGATTCGCTCAATGATCTTGAACTTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011301XLOC_011301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020105-exon-sc0000349-1491911889:149590..149837TCONS_00020105-exon-sc0000349-1491911889:149590..149837Clytia hemisphaericaexon
TCONS_00020105-exon-sc0000349-1510915933:149590..149837TCONS_00020105-exon-sc0000349-1510915933:149590..149837Clytia hemisphaericaexon
TCONS_00020105-exon-sc0000349-1575043694:149590..149837TCONS_00020105-exon-sc0000349-1575043694:149590..149837Clytia hemisphaericaexon
TCONS_00020105-exon-sc0000349-1491911889:149904..150126TCONS_00020105-exon-sc0000349-1491911889:149904..150126Clytia hemisphaericaexon
TCONS_00020105-exon-sc0000349-1510915933:149904..150126TCONS_00020105-exon-sc0000349-1510915933:149904..150126Clytia hemisphaericaexon
TCONS_00020105-exon-sc0000349-1575043694:149904..150126TCONS_00020105-exon-sc0000349-1575043694:149904..150126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:149590..150126 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94333	1.29665	0.700499	0.571363	0	0.288601	0	0.0591706	0	0	0	0	1.36436	1.03015	0.0442403	0	0	0	0	2.68809	0	0	2.35096	0.647707	0	0.129753	0.443153	0.426184	0	0.802376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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