TCONS_00020107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020107
Unique NameTCONS_00020107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020107 ID=TCONS_00020107|Name=TCONS_00020107|organism=Clytia hemisphaerica|type=transcript|length=2150bp
TGGGCAAGGATTGAAGTTTCTCAAGCTCAAAAAAGATTTATGTCAGTGGA
AGATTATTAAAGGAAAGAAGATGAACAAAAGAAacgtgaaaaagaaattt
gcacAATCGTTCCAGGGTAATTTTGGTAAGAATGATTCCGATTCAAAGGA
AGGAAATGTGCCTTATGCCATACTCAAAGCTGCTCGTCACAGTGGTCAAC
TAAATCTTTCTGGTCGCTCACTTACCTCCGTCCCAGACAAAGTTTACAGG
ATCAATATTGATGTCCCAGATGAGGCAAAAAGTACATCTATGGCTGACAC
TGATGAGAGATGGTGGGATCAAGTTGATTTGCGAAAACTGATTCTTGCCT
CCAATCAACTGTCAGAGATTTCTGGAGAAATCAAGAATTTGCCAGTCTTG
AATGTTTTAGATATCCATGATAATGTGATTGAAAAACTTCCTGAAGAAAT
CGGAGAGCTAAAGGAGCTTTCAAAACTTCATTTGAGTCATAACAAACTCT
CATGTTTTCCAAATTCATTTTGTAATCTTGTTGCATTGAAATCCTTGTTG
TTGTCAGGTAATGTCATTGAAAAACTTCCTGAAGATATTGGATATTTAGT
AAATGTTGAGGAGCTTGACTTGGCTCAGAATAAGTTGACTGGTCTTCCTG
AAAGCATTGGCAACATGAAATGCTTGAAAAAGCTCAATcttacaaaaaat
caaatcactGATCTACCTGTTACATTTGAATACTTGACTGGTTTACGTGA
TTTAGATTTAAGCTCAAATAAGTTGACAACACTTCCATCTGGCTTTGGGA
AATTGACATCACTTGAAATTGTTGAATGTCGATATAATTTGATAAGTTCA
ATTTCTAAGTTTACAGAAAGTGCAAACATCAAACAACTTTTTCTTGGCTA
TAATCGTTTGCGAGAACTTCCGGAAGATATCTTTGGGGATTTCCCACAGT
TGGTGTCATTAGATTTGAGAGACAACTCAATCTCCAAACTTCCAGAAAGT
CTTCTTGAACTGAAGATGCTTGAAAGGATTGACCTTACAAATAATAACAT
TTCTGGTTTGCCGTATGTTTTGGGCCATATGAAATTGAAAGCTCTTACTT
TGGATGGAAATCCTATGCGTGGAATTAGGCGTGATATCATAGCTAGAGGA
ACTCAAGCAATTCTTGAATATTTGCGTAGCCGTATGCCTATCCCTGAGCC
TAAAGAAGAGATAGTTGAAAGTCCCAAGAAGAGTGAAACTGTTGCTGACA
ATAACTCAACCAATGAATCACAAATTAAACCAGCACGTTTCGATGGAGAA
TCAAAAGTTCAAAGCAGTGACGCCAGTAAGCAAAACCATCCCAAAGAACC
TAGCAAAGCTGTTGTTGATCAATATCTCATTGCAACCACCAAAGTATTAA
CTCATAACAATGGCTCTTCAAACATTCCTGAATCTGTTTGGCTCCCTGGT
GCAAAAATCTCTAACATCAATTTCTCCAAAAATACACTATCAGAGTTTCC
TTCAGAAATTATGCAATATAAAGAAAGTTTGTCTGAGATTAACATTTCTC
ACAACAGAATAACTGCACTACCAGCATTGATTGGTGATTTATCCAAGCTT
ACATTTATCGATCTCAGTAACAACATGCTACAGGCATTACCAGAAGAAAT
CAAAGTTTTACCACATTTGCTTCAAATCGTACTTTCCTTCAACAGATTCA
CTACCATGCCCAAGCCCATGTTTGAAATGAAAAGTCTCCAAACGATTTTA
ATGGCAAATAACCAGTTAAGTGATATAGATGTTGATGGACTTTTACAGTT
GAAAACTGTGCAAACACTCGATCTCTCCAATAATAACATTGCCAGAATAC
CTCCCCAACTTGGAAATGTTGAATGGCTAAAATCGCTCAACTTAGATGGA
AACTCTTTCCGATCACCTCGTCCACAAATCTTGATGAAAGGTACACAATT
TATTCTAGGATATCTCCGAGATAGAATCCCTACTTGAACAGATTGAACTG
AAGAGATTGATTTCTGATGAGCCGTGATAAAATgttcagttttttttcag
atttttagtCATTATTTCCCTGATCTTATTGAGTAGACATTAGTTTTGTG
GACAAATTTTCAGAATCAACTTTTAGTTGTTTCTTTATTGCAATATATTG
Run BLAST on NCBI

protein sequence of TCONS_00020107-protein

>TCONS_00020107-protein ID=TCONS_00020107-protein|Name=TCONS_00020107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=661bp
GQGLKFLKLKKDLCQWKIIKGKKMNKRNVKKKFAQSFQGNFGKNDSDSKE
GNVPYAILKAARHSGQLNLSGRSLTSVPDKVYRINIDVPDEAKSTSMADT
DERWWDQVDLRKLILASNQLSEISGEIKNLPVLNVLDIHDNVIEKLPEEI
GELKELSKLHLSHNKLSCFPNSFCNLVALKSLLLSGNVIEKLPEDIGYLV
NVEELDLAQNKLTGLPESIGNMKCLKKLNLTKNQITDLPVTFEYLTGLRD
LDLSSNKLTTLPSGFGKLTSLEIVECRYNLISSISKFTESANIKQLFLGY
NRLRELPEDIFGDFPQLVSLDLRDNSISKLPESLLELKMLERIDLTNNNI
SGLPYVLGHMKLKALTLDGNPMRGIRRDIIARGTQAILEYLRSRMPIPEP
KEEIVESPKKSETVADNNSTNESQIKPARFDGESKVQSSDASKQNHPKEP
SKAVVDQYLIATTKVLTHNNGSSNIPESVWLPGAKISNINFSKNTLSEFP
SEIMQYKESLSEINISHNRITALPALIGDLSKLTFIDLSNNMLQALPEEI
KVLPHLLQIVLSFNRFTTMPKPMFEMKSLQTILMANNQLSDIDVDGLLQL
KTVQTLDLSNNNIARIPPQLGNVEWLKSLNLDGNSFRSPRPQILMKGTQF
ILGYLRDRIPT
Run BLAST on NCBI

transcript from alignment at sc0000349:186382..189345+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020107 ID=TCONS_00020107|Name=TCONS_00020107|organism=Clytia hemisphaerica|type=transcript|length=2964bp|location=Sequence derived from alignment at sc0000349:186382..189345+ (Clytia hemisphaerica)
TGGGCAAGGATTGAAGTTTCTCAAGCTCAAAAAAGGTGGTTATGGCATTG
CTAgataaaaagctgattttttggacctacctggaggacCTTTAATTTGA
ctgttgtccgttcgtctgttacaagcttttctcgggatcggctcattatt
ttttttaattttttgcacagtgatgcaaagtggtgattcccaaaaagtga
cgtagcctaattttcaaaaaaaagattttttgggcaaatttgggccaaag
agtgcctaaaaatgggatttttagactttgtgtgaaattgcttcataagt
tttttctgattttatgcatagagatggagggcaaggttctctaaaaagtg
gctgaagcagtttttttcggaaaatttgtttttggccgtaaaaatctgat
tttcttatttggggaaattcccttcatttttagggaaaaagagcatttct
ggcgattggatcgatattcttttctgattttttgcaatatttaaaatctg
aagtccaattttcaatcaatataattttttggggcaaatttgggccaaaa
tgtgcctaaaaatggggttttctggactttgtgtgGAAATGCTTCATtac
ttctttcaaattttttggacaaaggcaaggttctctaaaacgcAACTCAA
GCCtttttttccagaatttttttttggccgtaaaaatcggattttcttat
ttggggaaattcccttatataTATGTCATTTCTAGGAAAAAATTTTACTG
ccttaaaatgttgttttttttgctgccataaaaaaaaaaaacaagcaaag
ttTAATCCTAAAAAAGGGATAAGTTAAGTTCATCACTTTTTATTTCTAGA
TTTATGTCAGTGGAAGATTATTAAAGGAAAGAAGATGAACAAAAGAAacg
tgaaaaagaaatttgcacAATCGTTCCAGGGTAATTTTGGTAAGAATGAT
TCCGATTCAAAGGAAGGAAATGTGCCTTATGCCATACTCAAAGCTGCTCG
TCACAGTGGTCAACTAAATCTTTCTGGTCGCTCACTTACCTCCGTCCCAG
ACAAAGTTTACAGGATCAATATTGATGTCCCAGATGAGGCAAAAAGTACA
TCTATGGCTGACACTGATGAGAGATGGTGGGATCAAGTTGATTTGCGAAA
ACTGATTCTTGCCTCCAATCAACTGTCAGAGATTTCTGGAGAAATCAAGA
ATTTGCCAGTCTTGAATGTTTTAGATATCCATGATAATGTGATTGAAAAA
CTTCCTGAAGAAATCGGAGAGCTAAAGGAGCTTTCAAAACTTCATTTGAG
TCATAACAAACTCTCATGTTTTCCAAATTCATTTTGTAATCTTGTTGCAT
TGAAATCCTTGTTGTTGTCAGGTAATGTCATTGAAAAACTTCCTGAAGAT
ATTGGATATTTAGTAAATGTTGAGGAGCTTGACTTGGCTCAGAATAAGTT
GACTGGTCTTCCTGAAAGCATTGGCAACATGAAATGCTTGAAAAAGCTCA
ATcttacaaaaaatcaaatcactGATCTACCTGTTACATTTGAATACTTG
ACTGGTTTACGTGATTTAGATTTAAGCTCAAATAAGTTGACAACACTTCC
ATCTGGCTTTGGGAAATTGACATCACTTGAAATTGTTGAATGTCGATATA
ATTTGATAAGTTCAATTTCTAAGTTTACAGAAAGTGCAAACATCAAACAA
CTTTTTCTTGGCTATAATCGTTTGCGAGAACTTCCGGAAGATATCTTTGG
GGATTTCCCACAGTTGGTGTCATTAGATTTGAGAGACAACTCAATCTCCA
AACTTCCAGAAAGTCTTCTTGAACTGAAGATGCTTGAAAGGATTGACCTT
ACAAATAATAACATTTCTGGTTTGCCGTATGTTTTGGGCCATATGAAATT
GAAAGCTCTTACTTTGGATGGAAATCCTATGCGTGGAATTAGGCGTGATA
TCATAGCTAGAGGAACTCAAGCAATTCTTGAATATTTGCGTAGCCGTATG
CCTATCCCTGAGCCTAAAGAAGAGATAGTTGAAAGTCCCAAGAAGAGTGA
AACTGTTGCTGACAATAACTCAACCAATGAATCACAAATTAAACCAGCAC
GTTTCGATGGAGAATCAAAAGTTCAAAGCAGTGACGCCAGTAAGCAAAAC
CATCCCAAAGAACCTAGCAAAGCTGTTGTTGATCAATATCTCATTGCAAC
CACCAAAGTATTAACTCATAACAATGGCTCTTCAAACATTCCTGAATCTG
TTTGGCTCCCTGGTGCAAAAATCTCTAACATCAATTTCTCCAAAAATACA
CTATCAGAGTTTCCTTCAGAAATTATGCAATATAAAGAAAGTTTGTCTGA
GATTAACATTTCTCACAACAGAATAACTGCACTACCAGCATTGATTGGTG
ATTTATCCAAGCTTACATTTATCGATCTCAGTAACAACATGCTACAGGCA
TTACCAGAAGAAATCAAAGTTTTACCACATTTGCTTCAAATCGTACTTTC
CTTCAACAGATTCACTACCATGCCCAAGCCCATGTTTGAAATGAAAAGTC
TCCAAACGATTTTAATGGCAAATAACCAGTTAAGTGATATAGATGTTGAT
GGACTTTTACAGTTGAAAACTGTGCAAACACTCGATCTCTCCAATAATAA
CATTGCCAGAATACCTCCCCAACTTGGAAATGTTGAATGGCTAAAATCGC
TCAACTTAGATGGAAACTCTTTCCGATCACCTCGTCCACAAATCTTGATG
AAAGGTACACAATTTATTCTAGGATATCTCCGAGATAGAATCCCTACTTG
AACAGATTGAACTGAAGAGATTGATTTCTGATGAGCCGTGATAAAATgtt
cagttttttttcagatttttagtCATTATTTCCCTGATCTTATTGAGTAG
ACATTAGTTTTGTGGACAAATTTTCAGAATCAACTTTTAGTTGTTTCTTT
ATTGCAATATATTG

Coding sequence (CDS) from alignment at sc0000349:186382..189345+

>TCONS_00020107 ID=TCONS_00020107|Name=TCONS_00020107|organism=Clytia hemisphaerica|type=CDS|length=3972bp|location=Sequence derived from alignment at sc0000349:186382..189345+ (Clytia hemisphaerica)
GGGCAAGGATTGAAGTTTCTCAAGCTCAAAAAAGATTTATGTCAGTGGAA
GATTATTAAAGGAAAGAAGATGAACAAAAGAAacgtgaaaaagaaatttg
cacAATCGTTCCAGGGTAATTTTGGTAAGAATGATTCCGATTCAAAGGAA
GGAAATGTGCCTTATGCCATACTCAAAGCTGCTCGTCACAGTGGTCAACT
AAATCTTTCTGGTCGCTCACTTACCTCCGTCCCAGACAAAGTTTACAGGA
TCAATATTGATGTCCCAGATGAGGCAAAAAGTACATCTATGGCTGACACT
GATGAGAGATGGTGGGATCAAGTTGATTTGCGAAAACTGATTCTTGCCTC
CAATCAACTGTCAGAGATTTCTGGAGAAATCAAGAATTTGCCAGTCTTGA
ATGTTTTAGATATCCATGATAATGTGATTGAAAAACTTCCTGAAGAAATC
GGAGAGCTAAAGGAGCTTTCAAAACTTCATTTGAGTCATAACAAACTCTC
ATGTTTTCCAAATTCATTTTGTAATCTTGTTGCATTGAAATCCTTGTTGT
TGTCAGGTAATGTCATTGAAAAACTTCCTGAAGATATTGGATATTTAGTA
AATGTTGAGGAGCTTGACTTGGCTCAGAATAAGTTGACTGGTCTTCCTGA
AAGCATTGGCAACATGAAATGCTTGAAAAAGCTCAATcttacaaaaaatc
aaatcactGATCTACCTGTTACATTTGAATACTTGACTGGTTTACGTGAT
TTAGATTTAAGCTCAAATAAGTTGACAACACTTCCATCTGGCTTTGGGAA
ATTGACATCACTTGAAATTGTTGAATGTCGATATAATTTGATAAGTTCAA
TTTCTAAGTTTACAGAAAGTGCAAACATCAAACAACTTTTTCTTGGCTAT
AATCGTTTGCGAGAACTTCCGGAAGATATCTTTGGGGATTTCCCACAGTT
GGTGTCATTAGATTTGAGAGACAACTCAATCTCCAAACTTCCAGAAAGTC
TTCTTGAACTGAAGATGCTTGAAAGGATTGACCTTACAAATAATAACATT
TCTGGTTTGCCGTATGTTTTGGGCCATATGAAATTGAAAGCTCTTACTTT
GGATGGAAATCCTATGCGTGGAATTAGGCGTGATATCATAGCTAGAGGAA
CTCAAGCAATTCTTGAATATTTGCGTAGCCGTATGCCTATCCCTGAGCCT
AAAGAAGAGATAGTTGAAAGTCCCAAGAAGAGTGAAACTGTTGCTGACAA
TAACTCAACCAATGAATCACAAATTAAACCAGCACGTTTCGATGGAGAAT
CAAAAGTTCAAAGCAGTGACGCCAGTAAGCAAAACCATCCCAAAGAACCT
AGCAAAGCTGTTGTTGATCAATATCTCATTGCAACCACCAAAGTATTAAC
TCATAACAATGGCTCTTCAAACATTCCTGAATCTGTTTGGCTCCCTGGTG
CAAAAATCTCTAACATCAATTTCTCCAAAAATACACTATCAGAGTTTCCT
TCAGAAATTATGCAATATAAAGAAAGTTTGTCTGAGATTAACATTTCTCA
CAACAGAATAACTGCACTACCAGCATTGATTGGTGATTTATCCAAGCTTA
CATTTATCGATCTCAGTAACAACATGCTACAGGCATTACCAGAAGAAATC
AAAGTTTTACCACATTTGCTTCAAATCGTACTTTCCTTCAACAGATTCAC
TACCATGCCCAAGCCCATGTTTGAAATGAAAAGTCTCCAAACGATTTTAA
TGGCAAATAACCAGTTAAGTGATATAGATGTTGATGGACTTTTACAGTTG
AAAACTGTGCAAACACTCGATCTCTCCAATAATAACATTGCCAGAATACC
TCCCCAACTTGGAAATGTTGAATGGCTAAAATCGCTCAACTTAGATGGAA
ACTCTTTCCGATCACCTCGTCCACAAATCTTGATGAAAGGTACACAATTT
ATTCTAGGATATCTCCGAGATAGAATCCCTACTTGAGGGCAAGGATTGAA
GTTTCTCAAGCTCAAAAAAGATTTATGTCAGTGGAAGATTATTAAAGGAA
AGAAGATGAACAAAAGAAacgtgaaaaagaaatttgcacAATCGTTCCAG
GGTAATTTTGGTAAGAATGATTCCGATTCAAAGGAAGGAAATGTGCCTTA
TGCCATACTCAAAGCTGCTCGTCACAGTGGTCAACTAAATCTTTCTGGTC
GCTCACTTACCTCCGTCCCAGACAAAGTTTACAGGATCAATATTGATGTC
CCAGATGAGGCAAAAAGTACATCTATGGCTGACACTGATGAGAGATGGTG
GGATCAAGTTGATTTGCGAAAACTGATTCTTGCCTCCAATCAACTGTCAG
AGATTTCTGGAGAAATCAAGAATTTGCCAGTCTTGAATGTTTTAGATATC
CATGATAATGTGATTGAAAAACTTCCTGAAGAAATCGGAGAGCTAAAGGA
GCTTTCAAAACTTCATTTGAGTCATAACAAACTCTCATGTTTTCCAAATT
CATTTTGTAATCTTGTTGCATTGAAATCCTTGTTGTTGTCAGGTAATGTC
ATTGAAAAACTTCCTGAAGATATTGGATATTTAGTAAATGTTGAGGAGCT
TGACTTGGCTCAGAATAAGTTGACTGGTCTTCCTGAAAGCATTGGCAACA
TGAAATGCTTGAAAAAGCTCAATcttacaaaaaatcaaatcactGATCTA
CCTGTTACATTTGAATACTTGACTGGTTTACGTGATTTAGATTTAAGCTC
AAATAAGTTGACAACACTTCCATCTGGCTTTGGGAAATTGACATCACTTG
AAATTGTTGAATGTCGATATAATTTGATAAGTTCAATTTCTAAGTTTACA
GAAAGTGCAAACATCAAACAACTTTTTCTTGGCTATAATCGTTTGCGAGA
ACTTCCGGAAGATATCTTTGGGGATTTCCCACAGTTGGTGTCATTAGATT
TGAGAGACAACTCAATCTCCAAACTTCCAGAAAGTCTTCTTGAACTGAAG
ATGCTTGAAAGGATTGACCTTACAAATAATAACATTTCTGGTTTGCCGTA
TGTTTTGGGCCATATGAAATTGAAAGCTCTTACTTTGGATGGAAATCCTA
TGCGTGGAATTAGGCGTGATATCATAGCTAGAGGAACTCAAGCAATTCTT
GAATATTTGCGTAGCCGTATGCCTATCCCTGAGCCTAAAGAAGAGATAGT
TGAAAGTCCCAAGAAGAGTGAAACTGTTGCTGACAATAACTCAACCAATG
AATCACAAATTAAACCAGCACGTTTCGATGGAGAATCAAAAGTTCAAAGC
AGTGACGCCAGTAAGCAAAACCATCCCAAAGAACCTAGCAAAGCTGTTGT
TGATCAATATCTCATTGCAACCACCAAAGTATTAACTCATAACAATGGCT
CTTCAAACATTCCTGAATCTGTTTGGCTCCCTGGTGCAAAAATCTCTAAC
ATCAATTTCTCCAAAAATACACTATCAGAGTTTCCTTCAGAAATTATGCA
ATATAAAGAAAGTTTGTCTGAGATTAACATTTCTCACAACAGAATAACTG
CACTACCAGCATTGATTGGTGATTTATCCAAGCTTACATTTATCGATCTC
AGTAACAACATGCTACAGGCATTACCAGAAGAAATCAAAGTTTTACCACA
TTTGCTTCAAATCGTACTTTCCTTCAACAGATTCACTACCATGCCCAAGC
CCATGTTTGAAATGAAAAGTCTCCAAACGATTTTAATGGCAAATAACCAG
TTAAGTGATATAGATGTTGATGGACTTTTACAGTTGAAAACTGTGCAAAC
ACTCGATCTCTCCAATAATAACATTGCCAGAATACCTCCCCAACTTGGAA
ATGTTGAATGGCTAAAATCGCTCAACTTAGATGGAAACTCTTTCCGATCA
CCTCGTCCACAAATCTTGATGAAAGGTACACAATTTATTCTAGGATATCT
CCGAGATAGAATCCCTACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011302XLOC_011302Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020107-proteinTCONS_00020107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020107-exon-sc0000349-1491911889:186382..186416TCONS_00020107-exon-sc0000349-1491911889:186382..186416Clytia hemisphaericaexon
TCONS_00020107-exon-sc0000349-1510915933:186382..186416TCONS_00020107-exon-sc0000349-1510915933:186382..186416Clytia hemisphaericaexon
TCONS_00020107-exon-sc0000349-1575043694:186382..186416TCONS_00020107-exon-sc0000349-1575043694:186382..186416Clytia hemisphaericaexon
TCONS_00020107-exon-sc0000349-1491911889:187231..189345TCONS_00020107-exon-sc0000349-1491911889:187231..189345Clytia hemisphaericaexon
TCONS_00020107-exon-sc0000349-1510915933:187231..189345TCONS_00020107-exon-sc0000349-1510915933:187231..189345Clytia hemisphaericaexon
TCONS_00020107-exon-sc0000349-1575043694:187231..189345TCONS_00020107-exon-sc0000349-1575043694:187231..189345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:186382..189345 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.37382	9.15011	1.90926	1.30747e-05	4.5699	5.78994	6.83473	8.36062	4.65268	6.63546	7.0643	3.463	3.39779	5.8193	6.24344	6.34125	7.2197	7.08132	3.55058	3.31331	5.82393	3.97081	13.7183	14.1097	9.93776	10.9132	4.96323	3.86451	7.03494	6.74103
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00020107 vs. Swiss-Prot (Human)
Match: LRC40 (Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 4.628e-140
Identity = 252/631 (39.94%), Postives = 385/631 (61.01%), Query Frame = 2 
Query:  101 AQSFQGNFGKNDSDSKEGNVPYAILKAARHSGQLNLSGRSLTSVPDKVYRINIDVPDEAKSTSMADTDERWWDQVDLRKLILASNQLSEISGEIKNLPVLNVLDIHDNVIEKLPEEIGXXXXXXXXXXXXXXXXCFPNSFCNLVALKSLLLSGNVIEKLPEDIGYLVNVEELDLAQNKLTGLPESIGNMKCLKKLNLTKNQITDLPVTFEYLTGLRDLDLSSNKLTTLPSGFGKLTSLEIVECRYNLISSISKFTESANIKQLFLGYNRLRELPEDIFGDFPQLVSLDLRDNSISKLPESLLELKMLERIDLTNNNISGLPYVLGHMKLKALTLDGNPMRGIRRDIIARGTQAILEYLRSRMPIPEPKEEIVESPKKSETVADNNSTNESQIKPARFDGESKVQSSDASKQNHPKEPSKAVVDQYLIATTKVLTHNNGSSN-IPESVW--LPGAKISNINFSKNTLSEFPSEIMQYKESLSEINISHNRITALPALIGDLSKLTFIDLSNNMLQALPEEIKVLPHLLQIVLSFNRFTTMPKPMFEMKSLQTILMANNQLSDIDVDGLLQLKTVQTLDLSNNNIARIPPQLGNVEWLKSLNLDGNSFRSPRPQILMKGTQFILGYLRDRIPT 1984
             Q  +  F     D    +VP  +LKAAR SGQLNLSGR+L+ VP  V+RIN+D+P+EA         ERWW+Q DL KLI+++N+L  ++ +++ LP L VLDIHDN +  LP  I EL+ L KL++SHNKL   P    NL  LK L L  N +  + E    L N+E+LDL+ N LT +P S  ++  L +LNL+ N++  LP     +  L+ LD +SN L T+P     + SLE++  R N +  + +F   + +K+L +G N++  L  +       ++ LDLRDN +  +P+ ++ L+ LER+DL+NN+IS LPY LG++ LK L L+GNP+R IRR+II++GTQ +L+YLRS++                                 + DG S+   S+++ +     PS++ V+ + I T K+L +++  +  IP+ V+  +    +++INFSKN L E P  +++ KE +S++++S N+++ +   +  L KLTF+DL NN L +LPEE++ L  L  I LSFNRF  +P+ ++ + +L+TIL++NNQ+  +D   +  ++ + TLDL NN++ +IPP+LGN   L++L LDGN FR PR  ILMKGT  IL YLRDRIPT
Sbjct:    9 GQDLRAGFKAGGRDCG-TSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI---------------------------------KDDGPSQ---SESATETAMTLPSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT 602
The following BLAST results are available for this feature:
BLAST of TCONS_00020107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC404.628e-14039.94Leucine-rich repeat-containing protein 40 OS=Homo ... [more]
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