TCONS_00020108 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020108
Unique Name	TCONS_00020108
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3937

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000349:191151..203788+

transcript sequence

>TCONS_00020108 ID=TCONS_00020108|Name=TCONS_00020108|organism=Clytia hemisphaerica|type=transcript|length=3937bp
TTAGCACGCACAAATAAAAAAGGAGTAGCTATGTCACACAAATGACATTA
GCGAAATATCcaagaaaacaaaatgacattATGACGTAATTGGAAAATCC
AATCAGCATGGATGGTGGAGTGTTCTTACACGATGATGCTTGTATATCGG
ATAAAGAGCGCCATATACGATCTGTGAGCTGAACAGAAACATAATCTTCA
TAAAGATGGCGGAGATCTCTTACGCAGATGCTGCAAAAACAATGCCTGAA
AACGTGGAGGAGATGTGGGAACTAGTGGAGAAAACCTCGTTAAAGGAATC
CTTTGAAGTGCTCCCCGTTAAAAATCGTCGCGGATGGAGAACAATCCGAA
TATTCGTCTCCAGCACTTTCAAAGACTTTCTAAACGAACGAGAAATTCTC
GTGAAAGAATTATTTCCTGACTTACGCCTTTGGTGTGAGGAAAGAAAACT
TCGATTGATTGAGTGTGATTTGAAATGGGGTGTTCCTATAGGTACCACTG
GAAGTGAAACCATTCAAATATGTTTAGGGGAGTTGGATCGTTGTTGCGAG
GAGAATCATGTGCCgttctttttgaatttatgTGCAGAGCGTGTGGGTTG
GATCCCGACTTCAGAGGAACTGACCGCCAACCTGACTTCTCATTATGGTT
GGGTACATGGTCTATCCATTACAGAAATGGAGATTGTGCACGGCGCCTTG
AGAAAAATGAATCCAAATGCTCTGTTCATGATTCGTGAAGCTGATTCGTT
GGAAGGGCTTCCTGATCATATTGTTGAAGCTTTCAAGGAATCAAATGAAC
GAAGTGTAGAGAAACTGAGCATGTTAAAAACCAAGGTGGCTGAAGCATTC
CCGAGTAATCATCATTTTTACCAAGTCAAGGGGAATTATGTGAAGGACGA
TGACAACCGAGAAAATGTCACTTTCGAGGGTCTCAATGGAGATTTTTATC
AgaaagtattttcttttttcaaagaacGCATTGAAATGTTGTACCCGCTT
GAAGATTCACCCGAGGATCCAATAGAGGTACAAAGGGAAGCGCACTTGAC
CTTTATGGAAACACGTTCGAAAAGCGTGCTTGGTCGAGATCAACAACTTG
GTGAAATACAGTACTATATTAGGAACGATCAGACTTATTCACCCCTTGTT
CTGGTTGGACAGAGCGGTGCCGGGAAATCTTCAATTATTGCCCGAAGTGC
ACGAGACGTGTGTGATATGATAGATGACGGACAGCTATCCGGGAAAGTGT
TTGTCCATTTTGTTGGTGCAACACCTGGATCCACCGACCTTGTCTCGTTC
CTGAAACGGATCGTTGCCGAGTTGAGTCCAGACAATAAAGAGAGTATATC
TGATCTTCAAGGTTATGTGCAGCTGGTTTGTCGATTGTTGTCGAAGGAGG
AAATTGGACCCGTGTATCTGTTCATCGACGCAATCAACCAGATGGATGAA
GACAAGCAATATTATCTCGCCCGTTGGTTACCATGCCAACTTGCTCAAAA
CATACGTGTTGTAATCTCAACCATTGAAAACACCGACACCCATCAAATTC
TCACAAAGTTTGTTCCCGCCCCGAAAGAAATTGCTTGCGGCCCCTTAGAC
GAAACATCACGCGAAGAAATCGTCCGCAACATTTTACGGGATTACACCAA
AGAACTACATCCAGATCAAATGAGATTATTGATATCCAAAAAGGGCTCGT
CCAACCCACTTTGGCTAGCCGTTGCGTGTGAGGAACTCCGTGTGGAAGCA
GTGTTCGAAACGGTGACGTCAATGATCGAAGCATTTCCCaatgagcttat
tgacatggagGTTAACTTAATCAATCGGTTAGTACGTGGTGAGAACGGAG
ATCAGATCAAAAGCGCACTTCTCCTTCTCGAAGTTTCGCGACATGGATTG
CTTGAAACGGAACTCATGGAACTCCTAGCTGAGAAAAATCTTCATCTAGT
TGGGAGCACCTTTGAGGAAGGTGATGAGAATGAGAAGGTTAAACCCGGCT
GTAAGAAGACAATACCGGCTCGTGATTGGGCTATCATTTATCGTAACATC
AAGCAGCTTCTCCGACCATGTGGTAACCTTGGAGACGGTAGATTAGATTT
CTATCATCGATCGTTGAGCAAAGCCGTTCGTAAACAGTTCCTAAGTGGTT
CGCCTGGTGAAGAGAAAAAGCACGTGTACGTCCACTGGCATCGTGTGTTG
GCGGATTATTTCGAGAAAGCGACGGACGACGATCGAAGAGCGGAGGAACT
ACCGTATCATTTAGAGCAACTCTCCGATTCTGCTCGTTTAGAGAAATGTC
TTATCGACTGGAATATCTTTAATCGTCTGTATGATGAGCATTTTGCTGTT
GAATTGATCAGGTTTTGGAAGGCTGCTGGTGGCTATGAGGCAGCTGCTCG
CAGATACACAGATTCCCTTGGTCAGTTGAAAGAAACAGAAATATCACGCA
CCGAGTTCTCCGAACAGCAGTACAAGGTGGCAAACTTTCTGAAGGCAGGA
GGGCAATTCAGACAAGCTCATGCAATGATGCTAGAAAGTATTGCAATCGA
GGAAGCAGAGAACACAGTGAAGATCGATCCATTTCGCGTGGCACAAATGT
GTCATTGGACGGCATACTGTAAGCGTGCCTTGTCATTCAAAGAGCCCACA
CCTGAagagaaaatcaaaagttttgaagaagCTATCGAAACCTATCATAA
AAGTAACGCGTTTCTTGACCGTTTAACGTGCGAAGAAAGTGAAGTTTTGC
GAGGAAGAAGCAACTGTGGTATGGCTCACGTCATGTTGAAGATTTCAGAC
GAGAAAAAAACTCACGATTCTGACGAATTCCAAAGCATTGCTGCACCTTT
GATCAAATCCTCAGTCGACGTCCTCGAAAAGTATAACGCAATACGGTATC
TGATCGATGCGCTCGGTACACAATCACTGATCGTGCCTAATGGTCCTGAA
ttcttcgaagaaaaaaaacgaattcgAATGCGTGCTCTTGACTTATGTTT
AAGAACATTCGGCGAGGTCCACGATTTGTTTGTTACTAAATCGCGGAATT
TTGGTGCCATCTTGAAAAAGGCTGATGATTACGAATCGGCTTATGATTGG
TATCATAGATCTCTGGTCGCCAGTACAAAACTGTACGGTCCCGAGCATTC
GTACACACAACTTGTTCAGAAAGATCTTCAGGACCCAGTGTTTACGGACA
TAGCCGAACGACGATTTCGTAGCGCTGAAGAGACGAAGCTACCGTTAGCA
GTTGGGTACGAACCACCTGAAAACAACGATGAGCAGATTGGGAAGAATCC
GGGAAATGAatcaggcaagaaaaatgaaACTGGGGCATCTGATGACGAGA
ATGAACCCAATGGTGCGAAATTAGAGATTGCCGAAAGAACAGATCGAAGT
GGGATGTGCTGCTTTCTATAAATTGACACAAATACTTCTTTCATAATTAT
GAAATCGTTGTGAGGAACTATTCAATATTTCACATAGACAGTTAGACCTT
TTTAGAAGGACGGCTTTCTGCCTTTTCTCAGTCCGATCGATGTAAGAGAA
AGCAAAAGATTAAGCTGAAGTCATCGTATTGACTTTCAGCTCTTCCCGac
ttttaccaaaaataaaGTGACCTTGGttaaaaattatttgataaatGCCC
CATAGTGTGAACCCCCCTTCTTTAAGGGGATCCAACTTTTCAAGAAAGGC
TTTATAGGGTGGGATTTTCCAAGTAAAATTGGGGGTTTGTGTTTTTAGGG
GGgtattaaataaaaataggggaaataacaaattttttgcaaaaatatgt
aTTTATCTTTAAATGGTCAAAGAATTGGGTATAGTCCAACAAAATTACAA
TGTAATGGCAAATTTTTGGTATTAAATTGTTTGTGAACCACCATTGTAGT
TAGTGCGGGttcgaaaaaatttttaaataggGAGAAT

Run BLAST on NCBI

transcript from alignment at sc0000349:191151..203788+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020108 ID=TCONS_00020108|Name=TCONS_00020108|organism=Clytia hemisphaerica|type=transcript|length=12638bp|location=Sequence derived from alignment at sc0000349:191151..203788+ (Clytia hemisphaerica)
TTAGCACGCACAAATAAAAAAGGAGTAGCTATGTCACACAAATGACATTA
GCGAAATATCcaagaaaacaaaatgacattATGACGTAATTGGAAAATCC
AATCAGCATGGATGGTGGAGTGTTCTTACACGATGATGCTTGTATATCGG
TATGTTTTAGTTTTATATCAATTCCCAATTCTCACATTTCCAACCTATCC
TTATATCAAAAGGAAACCTCATGGGAAAGTGATTACTATGATAAAGTGAT
AGTAACAATTATATCAACCAGTGGACTTTGAACGGTtcgatatttgatat
tttgccATTCGAAGCCATTAGTTAGTATAAAAAGGATTACAGCAAAACGG
AAAATGATCCACATTTCCAACCTATTATTTTCTCAAAAGAAAACTTAACA
TTTATATCAACCAGTGGACTTTGAAAGGTTcgatattttgatatttggcc
ATTCAAAGCCATTAGTTAGTATAAAAAGGATTACCGTTTGCAAAACGGAA
AATGATCCACATTTCCAACCTATTCTTGTCTCAAAAGAGGAAACCTCATG
GGAAAGTGATTACTATGATAAAGTGATAGTCACATTTATATCGACCAGTG
GACTTTGAAAGGTTTGATATTTGGTATTCGGCCATTCGAAGCCATTAGTT
GGTATAAAAAGGGTACAGCAAAACATAAAATGATCCATGTTTCCAACCTT
AACCTTGTCTCAAAAGAGGAAACCTCATGGGAAAGTGATTACTATGATAT
TTTAATGATCGTAACATTTTTATCAACCAGTGGACTTTGAAAGGTTTGAT
ATTTGGTATTCGGCCATTCGAAGCCATTAGTTGGTATAAAAAGGGTTACA
GCAATACAGAAAATTTCCATAGTTTCCAACCTATCCTTGTCTCAAAAGAG
GAAACCTCATGGGAAAGTGATTACTATGATATTTTAATGATAGTAACATT
TATATCGACCAGTGGACTTTGAAAGGTTTGATATTTGGTATTCGGCCATT
CGAAGCCATTAGTTGGTATAAACTGGTATAAAAAGGATTACAGCAATACA
GAAAATTCCCATAGTTTCCAACCTATCCTTGTCTCAAAAGAGGAAACCTC
ATGGGAAAGTGATTTCTATGGTATTTTAGTGATGGTAACATTTATCTCAA
CCAGTGGCAGTGGACTTTGAAAGgtttgattttggtattttgccATTCGA
AGCCATTAGTTGGTAAAAAAATGATTACAGCAAAACATAAAATGATCCAT
GTTTCCAACCTAACCTTGTCTCAAAAGAGGAAACCTCATGGGAAAGTGAT
TACTATGATATTTTAGTTGTAgcaagaatttattatagacactggataac
caacgagctatattttcattaatttctcgtgttctagccttgtccgcagt
aatgacattattgttcactctccttccttcattaaacgatttttgcaaca
ttttaatcatttttctcatcttaacacagtcatttcaattcccaaatgaa
aattaagttttccttagagaggcgaacgcatcaaaataattgctaattac
ttgtcgttatgacgtttcaagttgcaagaaagatatgaaaaacatgctat
gtatgaaaaattgaatgttgacaccagaaattttcaaaatttaacctcaa
taaaaccaccgatccaccacgagcctccaaaatattttcatagcacggtg
aagccaagacactcaagtctcatATATCTCGATCTTAGCTCTTCTCAGAA
AGATGTTAGAGAGATATTGTTAACTTAAAATTCTGTGTCATTTTAggcct
tttgtttgatttttcttgtctgatgatgtttttgtcacGACAGATATAAT
ACGTGTATCCGTtaagtattttagcatttatttccaaatttttggcgagt
aaagtacaaaaaagataaagatagaggactttttagaaaagagattatta
atcatttttcaaaatcagagaacttcgagccgccatgacagttgtccttt
gcggacaaagctaaatcctcgatttttttcttaaacaaaaaaaagacaat
gcttctctctccaccgttttatacgttgtttttccagtgtctataataaa
ttcatgGTTGTAGTAAAATTTATATCAACCAGTTGACTTTGAAAGGTTCG
ATATTTTGTATTCGGCCATTCAAAGCCATTGGTTATATAAAAAGGATTAC
AGCAAAACGAAAAATAATCCACATTTCCAACCTATTATTTTCTCAAAAGA
AAACTTAACATTTATATCAACCAGTGGACTTTGAAAGGTTCGATATTTGA
TATCtgttgatatttgatatttgacCATTCAAAGCCATTAGTTGGTATAA
AAAGGATTACAGCAAAACGGAAAATGACCCACATTTCCAACCTATTACtt
tcttaaaagaaaacttAAGATTTATATCAACCAGTGGACTTTGAAAGGTT
TGATATTTGGTATTTGGCCATTCAAAGCCATTAGTTGGTATAAAAAGGAT
TACAGCAAAACGGAAAATGACCCACATTTCCAACCTattattttcttaaa
agaaaacttaaattttttatcaaccAGTGGACTTTGAAAGGTTcgatatt
tgatatttgatatttgacCATTCAAAGCCATTAGTTGGTATAAAAAGGAT
TACAGCAAAACGGAAAATGACCCACATTTCCAACCTATTACtttcttaaa
agaaaacttAAGATTTATATCAACCAGTGGACTTTGAAAGGTTTGATATT
TGGTATTTGGCCATTCAAAGCCATTAGTTGGTATAAAAAGGATTACAGCA
AAACGGAAAATGACCCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGT
GGACTTTGAAAGGTTTGATATTTGGTATTTGGCCATTCAAAGCCATTAGT
TGGTATAAAAAGGATTACAGCAAAACGAAAAATAATCCACATTTCCAACC
TATTATTTTCTCAAAAGAAAACTTAACATTTATATCAACCAGTGGACTTT
GAAAGGTTCGATATTTGATATTTGGTATTTTGCCATTCGAAGCTATTAGT
TGGTATAAAAAGGATTACAGCAAAACGGAAAATGATACACATGTCCAACC
TattattttcttaaaagaaaacttaaaatttatatCAACCAGTGGACTTT
GAAAGGTTTGATATTTGGTATTTGGCCATTCAAAGCCATTAGTTGGTATT
CCAACCTAACCTTTTCTCAAAAGAGGAAACCTCATGGGAAAGTGATTACT
ATGATATTTTAGTGATAGTAACATTTATCTCAACCAATGGACTTTGAAAG
GTTTGATATTTGGTATTCGGCCATTCGAAGCCATTAGTTGGTAAAAAAAT
GATTACAGCAAAACATAAAATGATCCACATTTCCAACCTATTCTTGTCTC
CAAAGGAAACCTCATAGGAAAGTGATTACTACGATAAGTGATAGTAACAT
TTATCTCAACCAGTGGACTTTGAAAGGTTTGATATTTGGTATTCGGCCAT
TCAAAGCCATTAGTTAGTATAAAAAGGATTACTGTTTGCAAAACAGANcg
atatttgatatttgatatttgacCATTCAAAGCCATTAGTTGGTATAAAA
AGGATTACAGCAAAACGGAAAATGACCCACATTTCCAACCTATTACtttc
ttaaaagaaaacttaaaatttatatCAACCAGTGGACTTTGAAAGGTTTG
CTATTTGGTATTTTGCCATTCGAAGCCATTAGTTGGTATAAAAAGGATTA
CAGCAAAACGAAAAATAATCCACATTTCCAACCTATTATTTTCTCAAAAG
AAAACTTAACATTTATCTCAACCAATGGACTTTGAAAGGTTTGATATTTG
GTATTTGGCCATTCAAAGCCATTAGTTGGTATAAAAAGGATTACAGCAAA
ACGAAAAATAATCCACATTTCCAACCTATTATTTTCTCAAAAGAAAACTT
AACATTTATATCAACCAGTGGACTTTGAAAGGTTTGATATTTGGTATTCG
GCCATTCAAAGCCATTAGTTAGTATAAAAAGGATTACTGTTTGCAAAACA
GAAAACTAAAGAAAATGATCCTACCCCTACtgttttttcaatattttcaa
gacGATTTCATACATATTTGCAAATTGAAATCCATCATTTATATCAGAGA
AGTGTAAAGGGATAGAAAAAtagctttttgaaaacaatggaactAACGTC
ATGTACCAAGTCTTCTGCCCTTAGGTTAGTTTGTTTCGGTTtatggattt
cttttgttgttgatcAAAAAAATCCGCATAATTAGCGTGATGTGACGAGa
ctctttttgttttcaaatttttttgagtctAATTATGCGTTGGTGGCTTA
TATTTTGGGAACACCTCGCTCAGACCGAaagatacctatattttcttgct
cagaatatTCTAGCGTTTCTAATGATATAACGGTATCACGACGGCGTAAT
TATATAAAAAGCTATAAAGTGCgagaaaaaatgagaaatcaaatctgttt
tttatgaatttcttgcaaattttctcgaaataacTTGATATCATCGTGAT
GAGAACTTTTCCGACTACAAGttagtgtaaaatttgttactggaTACTGA
AAACGAAAAATACCAATTCACTTTTATAAACATAGCCATGTAGAAACCAG
CCCTCGTTGCAAGACGAGAcgtttttttgaacatttttaactACCTATAA
TTAAAACTTaattaaagctaaaacaaaggaACAAAGAACACTTTGGGTAA
TCAGAGAGGCACTTTTTCTATTCCTATCCATTTCTCTTTTTACCTTTCTT
ACCAACTATTTATTACATTGTCATTATCGGACAGATCCATAACCCAGGTT
ATTTATTATTCAGTGTAGAGCTATTTCATATCTATTTTTGAGGGGATCTA
AATATTTTATGATAtattatttttcctcttttgctAGGAAAAAATGTTCC
CTTTCTGTAACAAGGAACAAGTTACTTTGGTTTTCATAATTTGTATAATG
TTGTAACTTTTTCTGAATGTTTTTCTCATAATTGGAAAAGATCTCGCTAT
ATTCTAATACCCTACGCTGAAGAATTGAGCCCCTTTGGTAAgtataaggc
gagaccaattttgattagttgttttacgggcccgaccgaccctgaaataa
aaataaagttgattttggtagtacattttatttttaatgcttaacagact
gcaaaattttcaaaactttgatattttttccaaggttttttagaatttca
tgttcaatttttcattttatccataaaTTCGAGATCTTTCTGTCTTTTTa
ttctatttcgcatttttgtcaagatttagtagtttttgctgcctttttag
gagttTTTATCGGAGAAATTCgacttttatttttactttttcgcCGACtg
acctcttttttgggtagcttggcccgtaaaacaacaaatttaacTAGTCT
CGCCTGATGTGTTTAGCTTGAGCGTTCTTTCCAtgtgtttattttttgtt
tttattgtgaTCATTATATTATCCTATTGGCTGGATCTAAAACTTTTTAT
CTATAAAACTTACATTCGGACCAAACTGCTTAGTAAAATCTTAAAGTGAT
AGATAAATTATTAACCTTCTACAATATTATGTCCAAAGTGAACATTATCC
TATGGGCAGGATCTTGGAGtgcattacacgtttttttataaggacatccA
AAACATTTAAAGTCATTTAAAGTttcttaacttttgagttttaaacctaa
aaatgttcttataacatgttcttattttcaccatcttTTGAGTATTTCTG
ttcattttccttaaaaataggTTGTTTTGGaatccgcaaagccttaaaat
gttcttaacaagttcttaatattttgatacatcaaatccatatatagttt
gttcttacaaaaaacgtgtattgcttAAAATACTATATTTTAAAAGTATT
TACAATTGAGTTTAAAATCTTCTTCGTTTGACTGGAGGTTAGTAGCTTTG
TTCGACTAGGGTGAGTGCTTTTCATCGTAGAGACCAGGGACTAGACAGGT
CGAAACACATTGCTGTATAAATGAGCATAGATGACGGTGAATGTTTCTCA
ATATCACAACTCCTTCTCATGTGAACTATGACAAAGACACATGagataat
tttagaaaaattggaGTGTGAAAAGTATATCCAAGCAtgtttcacaaaaa
taatgtaTCCTTTTACTTGTTCTTCAGGATAAAGAGCGCCATATACGATC
TGTGAGCTGAACAGAAACATAATCTTCATAAAGATGGCGGAGATCTCTTA
CGCAGATGCTGCAAAAACAATGCCTGAAAACGTGGAGGAGATGTGGGAAC
TAGTGGAGAAAACCTCGTTAAAGGAATCCTTTGAAGTGCTCCCCGTTAAA
AATCGTCGCGGATGGAGAACAATCCGAATATTCGTCTCCAGCACTTTCAA
AGACTTTCTAAACGAACGAGAAATTCTCGTGAAAGAATTATTTCCTGACT
TACGCCTTTGGTGTGAGGAAAGAAAACTTCGATTGATTGAGTGTGATTTG
AAATGGGGTGTTCCTATAGGTACCACTGGAAGTGAAACCATTCAAATATG
TTTAGGGGAGTTGGATCGTTGTTGCGAGGAGAATCATGTGCCgttctttt
tgaatttatgTGCAGAGCGTGTGGGTTGGATCCCGACTTCAGAGGAACTG
ACCGCCAACCTGACTTCTCATTATGGTTGGGTACATGGTCTATCCATTAC
AGGTcagtttcaaactatttttaattatatcaagttttttttacaaatcc
GCTAACCTTTCATTAAAATCCTGGAGTGATTTCATCGTTGATCGGAGCTC
TAAATAATTTCGGTTTTGAAGTCACATTTAAGGGTTGAAACCAGcagctt
ataaaataaaataacatcTTAAGAAATTGTCTCCAAGGTTATACAAATCT
CTCtatttcgaacctctataattcgaatcattCTGTCATTCAAACTTAAA
TATCGGTCCCCTCAGCTAGAAATTAGCATAAAATGTTCTCTCTATAgttc
aaatatttctttaattcgaGGAAAAAATATAGCAccatgaagatcgaatt
agagtaCGGCAACTATATAAAACTCACCTATTAATAATATTTGTCATGGT
AATGGCTTAATAGAATTGCCACTCTGATGTCATCATTGTCTGTTAAAGAC
TTCTTTTGTTTGAGAAGACGTCATAAGTGGCAAAATAAATGTTATGAAGC
TATTGTCCCAGTTAGAAGATTAGTCAGATTAAATTCTACTCAGTGAGGAA
TAGTTTACTGGTTTTCAATCTCTTTCAAATTCTTTCCCTCTAGGAATCCT
TGTTAAGTTCTTCATCCCTTTGCATACTTGCAAACTTTCTTGTCTTCCAT
CTCCCaattcgatttgcgtaagggatcATCACTAAACAGATTCgaatgtt
tgcttccataatggtggaaattacgTAACATAACCAAACAAGAAAGAACC
TTCATTCTGTCTTTAGACCTTCTCCTCCCATTTTTCCTATGTATATTGTA
TTTTGTCTTTAGAAATGGAGATTGTGCACGGCGCCTTGAGAAAAATGAAT
CCAAATGCTCTGTTCATGATTCGTGAAGCTGATTCGTTGGAAGGGCTTCC
TGATCATATTGTTGAAGCTTTCAAGGAATCAAATGAACGAAGTGTAGAGA
AACTGAGCATGTTAAAAACCAAGGTGGCTGAAGCATTCCCGAGTAATCAT
CATTTTTACCAAGTCAAGGGGAATTATGTGAAGGACGATGACAACCGAGA
AAATGTCACTTTCGAGGGTCTCAATGGAGATTTTTATCAgaaagtatttt
cttttttcaaagaacGCATTGAAATGTTGTACCCGCTTGAAGATTCACCC
GAGGATCCAATAGAGGTACAAAGGGAAGCGCACTTGACCTTTATGGAAAC
ACGTTCGAAAAGCGTGCTTGGTCGAGATCAACAACTTGGTGAAATACAGT
ACTATATTAGGAACGATCAGACTAATTCACCCCTTGTTCTGGTTGGACAG
AGCNGACTACATTAGGAACGATCAGACTTATTCACCCCTTGTTCTGGTTG
GACAGAGCGGTGCCGGGAAATCTTCAATTATTGCCCGAAGTGCACGAGAC
GTGTGTGATATGATAGATGACGGACAGCTATCCGGGAAAGTGTTTGTCCA
TTTTGTTGGTGCAACACCTGGATCCACCGACCTTGTCTCGTTCCTGAAAC
GGATCGTTGCCGAGTTGAGTCCAGACAATAAAGAGAGTATATCTGATCTT
CAAGGTTATGTGCAGCTGGTTTGTCGATTGTTGTCGAAGGAGGAAATTGG
ACCCGTGTATCTGTTCATCGACGCAATCAACCAGATGGATGAAGACAAGC
AATATTATCTCGCCCGTTGGTTACCATGCCAACTTGCTCAAAACATACGT
GTTGTAATCTCAACCATTGAAAACACCGACACCCATCAAATTCTCACAAA
GTTTGTTCCCGCCCCGAAAGAAATTGCTTGCGGCCCCTTAGACGAAACAT
CACGCGAAGAAATCGTCCGCAACATTTTACGGGATTACACCAAAGAACTA
CATCCAGATCAAATGAGATTATTGATATCCAAAAAGGGCTCGTCCAACCC
ACTTTGGCTAGCCGTTGCGTGTGAGGAACTCCGTGTGGAAGCAGTGTTCG
AAACGGTGACGTCAATGATCGAAGCATTTCCCaatgagcttattgacatg
gagGTTAACTTAATCAATCGGTTAGTACGTGGTGAGAACGGAGATCAGAT
CAAAAGCGCACTTCTCCTTCTCGAAGTTTCGCGACATGGATTGCTTGAAA
CGGAACTCATGGAACTCCTAGCTGAGAAAAATCTTCATCTAGTTGGGAGC
ACCTTTGAGGAAGGTGATGAGAATGAGAAGGTTAAACCCGGCTGTAAGAA
GACAATACCGGCTCGTGATTGGGCTATCATTTATCGTAACATCAAGCAGC
TTCTCCGACCATGTGGTAACCTTGGAGACGGTAGATTAGATTTCTATCAT
CGATCGTTGAGCAAAGCCGTTCGTAAACAGTTCCTAAGTGGTTCGCCTGG
TGAAGAGAAAAAGCACGTGTACGTCCACTGGCATCGTGTGTTGGCGGATT
ATTTCGAGAAAGCGACGGACGACGATCGAAGAGCGGAGGAACTACCGTAT
CATTTAGAGCAACTCTCCGATTCTGCTCGTTTAGAGAAATGTCTTATCGA
CTGGAATATCTTTAATCGTCTGTATGATGAGCATTTTGCTGTTGAATTGA
TCAGGTTTTGGAAGGCTGCTGGTGGCTATGAGGCAGCTGCTCGCAGATAC
ACAGATTCCCTTGGTCAGTTGAAAGAAACAGAAATATCACGCACCGAGTT
CTCCGAACAGCAGTACAAGGTGGCAAACTTTCTGAAGGCAGGAGGGCAAT
TCAGACAAGCTCATGCAATGATGCTAGAAAGGTAAGGATATTGTATCTCA
ATTTAGTTTAGCATATGATTAGTTACATTATTAGGCCATGGGTACAAAAA
CCCTAAATGCCGTGACCAAACTTCTTATTTCTTTTGGTCAATTTGACAGA
AAAGGAGAGAGCAGGAATAAAATGTCAAAGAACCTCGAAAAACAGGCAGA
TTTAGCTTTTTACTAGATTTGGAGTACGCCAAACTCTCCTGTGCGAGTTG
TGCTTTTGCTCGAAGATGCTGTCGAAAAGATAttgtttccaaaaaaaaaa
aacggtacAGATTTTATATATACGAAACTATCTATCTATCTTACTAATTT
CGGGATATTTACAATAATATCGGAATTCTAGTTTAAGCAATGAATGCATA
ACTTAGGTAGCTCAAAtactaataaaaaataaaaatattaaataaagtat
ttaggaaatctatatattaatagcggtgNAAtactaataaaaaataaaag
tattaAATAAAGTATTTAGGAAATAGGTAATAAAACTGATATTAATTACG
AGGAGTTTAATTTATGATGAATAAAAATAGTCAAATCCCTTTCTGCTCTC
TTGCAAAACCTTACAGTGCATTACGCCTATCTTGAAAACATACCCGTAGC
CGATCAACTTGCCTGGCGTTccgtttatatatttttttaataaacttgac
tgtttattttttatctcCGTAGTATTGCAATCGAGGAAGCAGAGAACACA
GTGAAGATCGATCCATTTCGCGTGGCACAAATGTGTCATTGGACGGCATA
CTGTAAGCGTGCCTTGTCATTCAAAGAGCCCACACCTGAagagaaaatca
aaagttttgaagaagCTATCGAAACCTATCATAAAAGTAACGCGTTTCTT
GACCGTTTAACGTGCGAAGAAAGTGAAGTTTTGCGAGGAAGAAGCAACTG
TGGTAAGAatcatcttctttttttctcaataaaaatctatacgctctttt
ttataagaaccagtattTTTTTATGACACTAGGCTTTTCTTACTTCCTAC
TTGGCCCTTTGATCCTTGAAACTTTTCTTTAGGGCAGTCTGAGGTTAGGC
TTCATCCCTAATTTTTACTAACTTTGACCATTATAATATTtgcttgaaat
tcagcaattccAAACTTGAATTGTTCTTCAGTTTTGACGATTTTGCAGCT
TGACATTCCATTACAACTAATGTACAATATGACATTTAAACTGTGTTGCC
AATTGTGAACGGTTCTCCGACTGCGAATATTCAATAAATCGTTCTctcaa
agattttaaaagaagcACACCAAACATTACCCCATAGATCCCCCAAggta
aaagtaaacaaagtttCAGGCAGATATTTCCCCAGCCTAAATGAAACACG
CCAAATATACCCCACAGATCCCCCAAggtaaaagcaaacaaaaatttcag
gCAGATATTTCCCCAGCCTAAAAGAAACACGCCAAATATACCCCACAGAT
TCCCCAAGGtaaaagcaaacaaagtttCAGGCAGATATTTCCCCAGCCTA
AATGAAACACGCCAATTACCCCATAGATTCCCCAAggtaaaagcaaacaa
aaatttcaggCAGATATTTCCCCAGCCTACAAGTACACGAAACTCCAACC
ACAAAGACCACTCTCTCCACTTTCCATGCTACCCAGAAATTTTCAGACAT
GCAGACAAACTACACTGATATCTACATTGATGACAGACACACAGTTaaga
aagaaaacgaaaagaaaCAGCAGAATCGATCTGACGGTTACTTGTAAACG
ATTTGAGTGAAGATAGTGATGAATATGTATACGCTTTTAATGAAAAGGAT
AAAAATAGTCAGCCCAAAGACATAGATTGCAAGGACATTGCAACACAACT
ACGTAACGAAAACAACACACAAAAACacaattgtaaaaaaaaaaaaagtt
aaattttgataaattacaGGTATGGCTCACGTCATGTTGAAGATTTCAGA
CGAGAAAAAAACTCACGATTCTGACGAATTCCAAAGCATTGCTGCACCTT
TGATCAAATCCTCAGTCGACGTCCTCGAAAAGTATAACGCAATACGGTAT
CTGATCGATGCGCTCGGTACACAATCACTGATCGTGCCTAATGGTCCTGA
AttcttcgaagaaaaaaaacgaattcgAATGCGTGCTCTTGACTTATGTT
TAAGAACATTCGGCGAGGTCCACGATTTGTTTGTTACTAAATCGCGGAAT
TTTGGTGCCATCTTGAAAAAGGCTGATGATTACGAATCGGCTTATGATTG
GTATCATAGATCTCTGGTCGCCAGTACAAAACTGTACGGTCCCGAGCATT
CGTACACACAACTTGTTCAGAAAGATCTTCAGGACCCAGTGTTTACGGAC
ATAGCCGAACGACGATTTCGTAGCGCTGAAGAGACGAAGCTACCGTTAGC
AGTTGGGTACGAACCACCTGAAAACAACGATGAGCAGATTGGGAAGAATC
CGGGAAATGAatcaggcaagaaaaatgaaACTGGGGCATCTGATGACGAG
AATGAACCCAATGGTGCGAAATTAGAGATTGCCGAAAGAACAGATCGAAG
TGGGATGTGCTGCTTTCTATAAATTGACACAAATACTTCTTTCATAATTA
TGAAATCGTTGTGAGGAACTATTCAATATTTCACATAGACAGTTAGACCT
TTTTAGAAGGACGGCTTTCTGCCTTTTCTCAGTCCGATCGATGTAAGAGA
AAGCAAAAGATTAAGCTGAAGTCATCGTATTGACTTTCAGCTCTTCCCGa
cttttaccaaaaataaaGTGACCTTGGttaaaaattatttgataaatGCC
CCATAGTGTGAACCCCCCTTCTTTAAGGGGATCCAACTTTTCAAGAAAGG
CTTTATAGGGTGGGATTTTCCAAGTAAAATTGGGGGTTTGTGTTTTTAGG
GGGgtattaaataaaaataggggaaataacaaattttttgcaaaaatatg
taTTTATCTTTAAATGGTCAAAGAATTGGGTATAGTCCAACAAAATTACA
ATGTAATGGCAAATTTTTGGTATTAAATTGTTTGTGAACCACCATTGTAG
TTAGTGCGGGttcgaaaaaatttttaaataggGAGAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011303	XLOC_011303	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000349	supercontig	sc0000349:191151..203788 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63226	2.14759	0.506568	0.943195	13.0125	9.21148	30.4785	27.1397	5.58203	5.65168	10.4679	4.81689	3.96041	6.29518	3.19283	3.19674	5.87331	6.537	3.28064	7.6554	2.81778	5.60109	2.72965	1.09756	8.0438	8.80125	3.50145	1.95697	2.88545	2.74857

Blast

[Close]

BLAST of TCONS_00020108 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 6.619e-43
Identity = 204/811 (25.15%), Postives = 352/811 (43.40%), Query Frame = 2

Query:  113 WWSVLTR*CLYIG*---RAPYTICELNRNIIFIK-----MAEISYADAAKTMPENVEEMWELVE------KTSLK-------ESFEVLPVKNRRGWRTIRIFVSSTFKDFLNEREILVKELFPDLRLWCEERKLRLIECDLKWGVPIGTTGSET-----IQICLGELDRCCEENHVPFFLNLCAERVGWIPTSEELTANLTSHYGWVH----GLSITEMEIVHGALR--KMNPN--ALFMIREADSLEGLPDHIVEAFKESNERSVEKLSMLKTKVAEAFPSNHHFYQVKGNYVKDDDNRENVTFEGLNGDFYQKVFSFFKERIEMLYPLEDSP--EDPIEVQRE--AHLTFMETRSKSVLGRDQQLGE-IQYYIRNDQTYSPLVLVGQSGAGKSSIIARSARDVCDMIDDGQLSGKVFVHFVGATPGSTDLVSFLKRIVAELSPDNKESISDLQGYVQLVC----RLLSK--EEIGP---VYLFIDAINQMDEDKQYYLARWLPCQLAQNIRVVISTIENTDTHQILTKFVPAPKEIACGPLDETSREEIVRNILRDYTKELHP----DQMRLLISKKGSSNPLWLAVACEELRVEAVFETVTSMIEAFPNELIDMEVNLINRLVRGENGDQIKSALLLLEVSRHGXXXXXXXXXXXXKNLHLVGS---TFEEGDEN--EKVKPG-CKKTIPARDWAIIYRNIKQLL------RPCGN--LGDGRLDFYHRSLSKAVRKQFLSGSPGEEKKHVYVHWHRVLADYFEKATDDDRRAE----------ELPYHLEQLSDSARLEKCLIDWNI 2317
            +W  +   CL++G    R  Y   +LN N + +      + +      A  + E+V +M ++ +      KT ++       ++   L   +++GWR+IR+F+SSTF+D   ER++L++ + P L+      ++ L   DL+WGV    T  ET     +++CLGE++      +   F+ +   R G+IP S  L  +   H+ W      G S+TEME++    R  ++ P+  AL   R++  L  +PD     F   +E +  ++S LK+ ++         Y  +   V          + G   +F Q V       I+ LY L+     E P+ +  +     TF + +      R + L + +Q  +      S  ++ GQSG GK++ +A S        D  +++  VF HF GA P     ++ L+R+   L    KE  +    Y  LV     RLL K  E + P     L ID  +++ +     ++ W+P +L + + +V+S   +    + L +   A   +A GPL+ ++R  +VR  L  Y K L      +QMRLL+ K+ S  PL+L +  + LR+  ++E V+  +   P  +  +  ++++ L +    D +  AL  LEV+R G         L    LH V S   T  +G ++  E V  G      P   +A + ++++ LL      RP     L DG L        +   K+     PG E        H ++A    K  D D              +LPYHL Q  +   L K L + ++
Sbjct:  801 YWQRVNSKCLFVGILLRRVQYLSTDLNPNDVTLSGCTDAILKFIAEHGASHLLEHVGQMDKIFKIPPPPGKTGVQSLRPLEEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGV----TEEETRRNRQLEVCLGEVE------NAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVA-----AGRPYVGGLEEFGQLVLQDVWNMIQKLY-LQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHGRLS--LVTGQSGQGKTAFLA-SLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGA-HVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSG---------LTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPL--------RTAAKRCYGKRPGLEDTA-----HILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHV 1567

The following BLAST results are available for this feature:

BLAST of TCONS_00020108 vs. Swiss-Prot (Human)

BLAST of TCONS_00020108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TEP1	6.619e-43	25.15	Telomerase protein component 1 OS=Homo sapiens GN=...	[more]

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TCONS_00020108 (transcript) - C. hemisphaerica