TCONS_00020112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020112
Unique NameTCONS_00020112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020112 ID=TCONS_00020112|Name=TCONS_00020112|organism=Clytia hemisphaerica|type=transcript|length=4006bp
GCTATTTCATATCTATTTTTGAGGGGATCTAAATATTTTATGATAtatta
tttttcctcttttgctAGGAAAAAATGTTCCCTTTCTGTAACAAGGAACA
AGTTACTTTGGTTTTCATAATTTGTATAATGTTGTAACTTTTTCTGAATG
TTTTTCTCATAATTGGAAAAGATCTCGCTATATTCTAATACCCTACGCTG
AAGAATTGAGCCCCTTTGGATAAAGAGCGCCATATACGATCTGTGAGCTG
AACAGAAACATAATCTTCATAAAGATGGCGGAGATCTCTTACGCAGATGC
TGCAAAAACAATGCCTGAAAACGTGGAGGAGATGTGGGAACTAGTGGAGA
AAACCTCGTTAAAGGAATCCTTTGAAGTGCTCCCCGTTAAAAATCGTCGC
GGATGGAGAACAATCCGAATATTCGTCTCCAGCACTTTCAAAGACTTTCT
AAACGAACGAGAAATTCTCGTGAAAGAATTATTTCCTGACTTACGCCTTT
GGTGTGAGGAAAGAAAACTTCGATTGATTGAGTGTGATTTGAAATGGGGT
GTTCCTATAGGTACCACTGGAAGTGAAACCATTCAAATATGTTTAGGGGA
GTTGGATCGTTGTTGCGAGGAGAATCATGTGCCgttctttttgaatttat
gTGCAGAGCGTGTGGGTTGGATCCCGACTTCAGAGGAACTGACCGCCAAC
CTGACTTCTCATTATGGTTGGGTACATGGTCTATCCATTACAGAAATGGA
GATTGTGCACGGCGCCTTGAGAAAAATGAATCCAAATGCTCTGTTCATGA
TTCGTGAAGCTGATTCGTTGGAAGGGCTTCCTGATCATATTGTTGAAGCT
TTCAAGGAATCAAATGAACGAAGTGTAGAGAAACTGAGCATGTTAAAAAC
CAAGGTGGCTGAAGCATTCCCGAGTAATCATCATTTTTACCAAGTCAAGG
GGAATTATGTGAAGGACGATGACAACCGAGAAAATGTCACTTTCGAGGGT
CTCAATGGAGATTTTTATCAgaaagtattttcttttttcaaagaacGCAT
TGAAATGTTGTACCCGCTTGAAGATTCACCCGAGGATCCAATAGAGGTAC
AAAGGGAAGCGCACTTGACCTTTATGGAAACACGTTCGAAAAGCGTGCTT
GGTCGAGATCAACAACTTGGTGAAATACAGTACTATATTAGGAACGATCA
GACTTATTCACCCCTTGTTCTGGTTGGACAGAGCGGTGCCGGGAAATCTT
CAATTATTGCCCGAAGTGCACGAGACGTGTGTGATATGATAGATGACGGA
CAGCTATCCGGGAAAGTGTTTGTCCATTTTGTTGGTGCAACACCTGGATC
CACCGACCTTGTCTCGTTCCTGAAACGGATCGTTGCCGAGTTGAGTCCAG
ACAATAAAGAGAGTATATCTGATCTTCAAGGTTATGTGCAGCTGGTTTGT
CGATTGTTGTCGAAGGAGGAAATTGGACCCGTGTATCTGTTCATCGACGC
AATCAACCAGATGGATGAAGACAAGCAATATTATCTCGCCCGTTGGTTAC
CATGCCAACTTGCTCAAAACATACGTGTTGTAATCTCAACCATTGAAAAC
ACCGACACCCATCAAATTCTCACAAAGTTTGTTCCCGCCCCGAAAGAAAT
TGCTTGCGGCCCCTTAGACGAAACATCACGCGAAGAAATCGTCCGCAACA
TTTTACGGGATTACACCAAAGAACTACATCCAGATCAAATGAGATTATTG
ATATCCAAAAAGGGCTCGTCCAACCCACTTTGGCTAGCCGTTGCGTGTGA
GGAACTCCGTGTGGAAGCAGTGTTCGAAACGGTGACGTCAATGATCGAAG
CATTTCCCaatgagcttattgacatggagGTTAACTTAATCAATCGGTTA
GTACGTGGTGAGAACGGAGATCAGATCAAAAGCGCACTTCTCCTTCTCGA
AGTTTCGCGACATGGATTGCTTGAAACGGAACTCATGGAACTCCTAGCTG
AGAAAAATCTTCATCTAGTTGGGAGCACCTTTGAGGAAGGTGATGAGAAT
GAGAAGGTTAAACCCGGCTGTAAGAAGACAATACCGGCTCGTGATTGGGC
TATCATTTATCGTAACATCAAGCAGCTTCTCCGACCATGTGGTAACCTTG
GAGACGGTAGATTAGATTTCTATCATCGATCGTTGAGCAAAGCCGTTCGT
AAACAGTTCCTAAGTGGTTCGCCTGGTGAAGAGAAAAAGCACGTGTACGT
CCACTGGCATCGTGTGTTGGCGGATTATTTCGAGAAAGCGACGGACGACG
ATCGAAGAGCGGAGGAACTACCGTATCATTTAGAGCAACTCTCCGATTCT
GCTCGTTTAGAGAAATGTCTTATCGACTGGAATATCTTTAATCGTCTGTA
TGATGAGCATTTTGCTGTTGAATTGATCAGGTTTTGGAAGGCTGCTGGTG
GCTATGAGGCAGCTGCTCGCAGATACACAGATTCCCTTGGTCAGTTGAAA
GAAACAGAAATATCACGCACCGAGTTCTCCGAACAGCAGTACAAGGTGGC
AAACTTTCTGAAGGCAGGAGGGCAATTCAGACAAGCTCATGCAATGATGC
TAGAAAGTATTGCAATCGAGGAAGCAGAGAACACAGTGAAGATCGATCCA
TTTCGCGTGGCACAAATGTGTCATTGGACGGCATACTGTAAGCGTGCCTT
GTCATTCAAAGAGCCCACACCTGAagagaaaatcaaaagttttgaagaag
CTATCGAAACCTATCATAAAAGTAACGCGTTTCTTGACCGTTTAACGTGC
GAAGAAAGTGAAGTTTTGCGAGGAAGAAGCAACTGTGGTATGGCTCACGT
CATGTTGAAGATTTCAGACGAGAAAAAAACTCACGATTCTGACGAATTCC
AAAGCATTGCTGCACCTTTGATCAAATCCTCAGTCGACGTCCTCGAAAAG
TATAACGCAATACGGTATCTGATCGATGCGCTCGGTACACAATCACTGAT
CGTGCCTAATGGTCCTGAAttcttcgaagaaaaaaaacgaattcgAATGC
GTGCTCTTGACTTATGTTTAAGAACATTCGGCGAGGTCCACGATTTGTTT
GTTACTAAATCGCGGAATTTTGGTGCCATCTTGAAAAAGGCTGATGATTA
CGAATCGGCTTATGATTGGTATCATAGATCTCTGGTCGCCAGTACAAAAC
TGTACGGTCCCGAGCATTCGTACACACAACTTGTTCAGAAAGATCTTCAG
GACCCAGTGTTTACGGACATAGCCGAACGACGATTTCGTAGCGCTGAAGA
GACGAAGCTACCGTTAGCAGTTGGGTACGAACCACCTGAAAACAACGATG
AGCAGATTGGGAAGAATCCGGGAAATGAatcaggcaagaaaaatgaaACT
GGGGCATCTGATGACGAGAATGAACCCAATGGTGCGAAATTAGAGATTGC
CGAAAGAACAGATCGAAGTGGGATGTGCTGCTTTCTATAAATTGACACAA
ATACTTCTTTCATAATTATGAAATCGTTGTGAGGAACTATTCAATATTTC
ACATAGACAGTTAGACCTTTTTAGAAGGACGGCTTTCTGCCTTTTCTCAG
TCCGATCGATGTAAGAGAAAGCAAAAGATTAAGCTGAAGTCATCGTATTG
ACTTTCAGCTCTTCCCGacttttaccaaaaataaaGTGACCTTGGttaaa
aattatttgataaatGCCCCATAGTGTGAACCCCCCTTCTTTAAGGGGAT
CCAACTTTTCAAGAAAGGCTTTATAGGGTGGGATTTTCCAAGTAAAATTG
GGGGTTTGTGTTTTTAGGGGGgtattaaataaaaataggggaaataacaa
attttttgcaaaaatatgtaTTTATCTTTAAATGGTCAAAGAATTGGGTA
TAGTCCAACAAAATTACAATGTAATGGCAAATTTTTGGTATTAAATTGTT
TGTGAACCACCATTGTAGTTAGTGCGGGttcgaaaaaatttttaaatagg
GAGAAT
Run BLAST on NCBI

transcript from alignment at sc0000349:196070..203788+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020112 ID=TCONS_00020112|Name=TCONS_00020112|organism=Clytia hemisphaerica|type=transcript|length=7719bp|location=Sequence derived from alignment at sc0000349:196070..203788+ (Clytia hemisphaerica)
GCTATTTCATATCTATTTTTGAGGGGATCTAAATATTTTATGATAtatta
tttttcctcttttgctAGGAAAAAATGTTCCCTTTCTGTAACAAGGAACA
AGTTACTTTGGTTTTCATAATTTGTATAATGTTGTAACTTTTTCTGAATG
TTTTTCTCATAATTGGAAAAGATCTCGCTATATTCTAATACCCTACGCTG
AAGAATTGAGCCCCTTTGGTAAgtataaggcgagaccaattttgattagt
tgttttacgggcccgaccgaccctgaaataaaaataaagttgattttggt
agtacattttatttttaatgcttaacagactgcaaaattttcaaaacttt
gatattttttccaaggttttttagaatttcatgttcaatttttcatttta
tccataaaTTCGAGATCTTTCTGTCTTTTTattctatttcgcatttttgt
caagatttagtagtttttgctgcctttttaggagttTTTATCGGAGAAAT
TCgacttttatttttactttttcgcCGACtgacctcttttttgggtagct
tggcccgtaaaacaacaaatttaacTAGTCTCGCCTGATGTGTTTAGCTT
GAGCGTTCTTTCCAtgtgtttattttttgtttttattgtgaTCATTATAT
TATCCTATTGGCTGGATCTAAAACTTTTTATCTATAAAACTTACATTCGG
ACCAAACTGCTTAGTAAAATCTTAAAGTGATAGATAAATTATTAACCTTC
TACAATATTATGTCCAAAGTGAACATTATCCTATGGGCAGGATCTTGGAG
tgcattacacgtttttttataaggacatccAAAACATTTAAAGTCATTTA
AAGTttcttaacttttgagttttaaacctaaaaatgttcttataacatgt
tcttattttcaccatcttTTGAGTATTTCTGttcattttccttaaaaata
ggTTGTTTTGGaatccgcaaagccttaaaatgttcttaacaagttcttaa
tattttgatacatcaaatccatatatagtttgttcttacaaaaaacgtgt
attgcttAAAATACTATATTTTAAAAGTATTTACAATTGAGTTTAAAATC
TTCTTCGTTTGACTGGAGGTTAGTAGCTTTGTTCGACTAGGGTGAGTGCT
TTTCATCGTAGAGACCAGGGACTAGACAGGTCGAAACACATTGCTGTATA
AATGAGCATAGATGACGGTGAATGTTTCTCAATATCACAACTCCTTCTCA
TGTGAACTATGACAAAGACACATGagataattttagaaaaattggaGTGT
GAAAAGTATATCCAAGCAtgtttcacaaaaataatgtaTCCTTTTACTTG
TTCTTCAGGATAAAGAGCGCCATATACGATCTGTGAGCTGAACAGAAACA
TAATCTTCATAAAGATGGCGGAGATCTCTTACGCAGATGCTGCAAAAACA
ATGCCTGAAAACGTGGAGGAGATGTGGGAACTAGTGGAGAAAACCTCGTT
AAAGGAATCCTTTGAAGTGCTCCCCGTTAAAAATCGTCGCGGATGGAGAA
CAATCCGAATATTCGTCTCCAGCACTTTCAAAGACTTTCTAAACGAACGA
GAAATTCTCGTGAAAGAATTATTTCCTGACTTACGCCTTTGGTGTGAGGA
AAGAAAACTTCGATTGATTGAGTGTGATTTGAAATGGGGTGTTCCTATAG
GTACCACTGGAAGTGAAACCATTCAAATATGTTTAGGGGAGTTGGATCGT
TGTTGCGAGGAGAATCATGTGCCgttctttttgaatttatgTGCAGAGCG
TGTGGGTTGGATCCCGACTTCAGAGGAACTGACCGCCAACCTGACTTCTC
ATTATGGTTGGGTACATGGTCTATCCATTACAGGTcagtttcaaactatt
tttaattatatcaagttttttttacaaatccGCTAACCTTTCATTAAAAT
CCTGGAGTGATTTCATCGTTGATCGGAGCTCTAAATAATTTCGGTTTTGA
AGTCACATTTAAGGGTTGAAACCAGcagcttataaaataaaataacatcT
TAAGAAATTGTCTCCAAGGTTATACAAATCTCTCtatttcgaacctctat
aattcgaatcattCTGTCATTCAAACTTAAATATCGGTCCCCTCAGCTAG
AAATTAGCATAAAATGTTCTCTCTATAgttcaaatatttctttaattcga
GGAAAAAATATAGCAccatgaagatcgaattagagtaCGGCAACTATATA
AAACTCACCTATTAATAATATTTGTCATGGTAATGGCTTAATAGAATTGC
CACTCTGATGTCATCATTGTCTGTTAAAGACTTCTTTTGTTTGAGAAGAC
GTCATAAGTGGCAAAATAAATGTTATGAAGCTATTGTCCCAGTTAGAAGA
TTAGTCAGATTAAATTCTACTCAGTGAGGAATAGTTTACTGGTTTTCAAT
CTCTTTCAAATTCTTTCCCTCTAGGAATCCTTGTTAAGTTCTTCATCCCT
TTGCATACTTGCAAACTTTCTTGTCTTCCATCTCCCaattcgatttgcgt
aagggatcATCACTAAACAGATTCgaatgtttgcttccataatggtggaa
attacgTAACATAACCAAACAAGAAAGAACCTTCATTCTGTCTTTAGACC
TTCTCCTCCCATTTTTCCTATGTATATTGTATTTTGTCTTTAGAAATGGA
GATTGTGCACGGCGCCTTGAGAAAAATGAATCCAAATGCTCTGTTCATGA
TTCGTGAAGCTGATTCGTTGGAAGGGCTTCCTGATCATATTGTTGAAGCT
TTCAAGGAATCAAATGAACGAAGTGTAGAGAAACTGAGCATGTTAAAAAC
CAAGGTGGCTGAAGCATTCCCGAGTAATCATCATTTTTACCAAGTCAAGG
GGAATTATGTGAAGGACGATGACAACCGAGAAAATGTCACTTTCGAGGGT
CTCAATGGAGATTTTTATCAgaaagtattttcttttttcaaagaacGCAT
TGAAATGTTGTACCCGCTTGAAGATTCACCCGAGGATCCAATAGAGGTAC
AAAGGGAAGCGCACTTGACCTTTATGGAAACACGTTCGAAAAGCGTGCTT
GGTCGAGATCAACAACTTGGTGAAATACAGTACTATATTAGGAACGATCA
GACTAATTCACCCCTTGTTCTGGTTGGACAGAGCNGACTACATTAGGAAC
GATCAGACTTATTCACCCCTTGTTCTGGTTGGACAGAGCGGTGCCGGGAA
ATCTTCAATTATTGCCCGAAGTGCACGAGACGTGTGTGATATGATAGATG
ACGGACAGCTATCCGGGAAAGTGTTTGTCCATTTTGTTGGTGCAACACCT
GGATCCACCGACCTTGTCTCGTTCCTGAAACGGATCGTTGCCGAGTTGAG
TCCAGACAATAAAGAGAGTATATCTGATCTTCAAGGTTATGTGCAGCTGG
TTTGTCGATTGTTGTCGAAGGAGGAAATTGGACCCGTGTATCTGTTCATC
GACGCAATCAACCAGATGGATGAAGACAAGCAATATTATCTCGCCCGTTG
GTTACCATGCCAACTTGCTCAAAACATACGTGTTGTAATCTCAACCATTG
AAAACACCGACACCCATCAAATTCTCACAAAGTTTGTTCCCGCCCCGAAA
GAAATTGCTTGCGGCCCCTTAGACGAAACATCACGCGAAGAAATCGTCCG
CAACATTTTACGGGATTACACCAAAGAACTACATCCAGATCAAATGAGAT
TATTGATATCCAAAAAGGGCTCGTCCAACCCACTTTGGCTAGCCGTTGCG
TGTGAGGAACTCCGTGTGGAAGCAGTGTTCGAAACGGTGACGTCAATGAT
CGAAGCATTTCCCaatgagcttattgacatggagGTTAACTTAATCAATC
GGTTAGTACGTGGTGAGAACGGAGATCAGATCAAAAGCGCACTTCTCCTT
CTCGAAGTTTCGCGACATGGATTGCTTGAAACGGAACTCATGGAACTCCT
AGCTGAGAAAAATCTTCATCTAGTTGGGAGCACCTTTGAGGAAGGTGATG
AGAATGAGAAGGTTAAACCCGGCTGTAAGAAGACAATACCGGCTCGTGAT
TGGGCTATCATTTATCGTAACATCAAGCAGCTTCTCCGACCATGTGGTAA
CCTTGGAGACGGTAGATTAGATTTCTATCATCGATCGTTGAGCAAAGCCG
TTCGTAAACAGTTCCTAAGTGGTTCGCCTGGTGAAGAGAAAAAGCACGTG
TACGTCCACTGGCATCGTGTGTTGGCGGATTATTTCGAGAAAGCGACGGA
CGACGATCGAAGAGCGGAGGAACTACCGTATCATTTAGAGCAACTCTCCG
ATTCTGCTCGTTTAGAGAAATGTCTTATCGACTGGAATATCTTTAATCGT
CTGTATGATGAGCATTTTGCTGTTGAATTGATCAGGTTTTGGAAGGCTGC
TGGTGGCTATGAGGCAGCTGCTCGCAGATACACAGATTCCCTTGGTCAGT
TGAAAGAAACAGAAATATCACGCACCGAGTTCTCCGAACAGCAGTACAAG
GTGGCAAACTTTCTGAAGGCAGGAGGGCAATTCAGACAAGCTCATGCAAT
GATGCTAGAAAGGTAAGGATATTGTATCTCAATTTAGTTTAGCATATGAT
TAGTTACATTATTAGGCCATGGGTACAAAAACCCTAAATGCCGTGACCAA
ACTTCTTATTTCTTTTGGTCAATTTGACAGAAAAGGAGAGAGCAGGAATA
AAATGTCAAAGAACCTCGAAAAACAGGCAGATTTAGCTTTTTACTAGATT
TGGAGTACGCCAAACTCTCCTGTGCGAGTTGTGCTTTTGCTCGAAGATGC
TGTCGAAAAGATAttgtttccaaaaaaaaaaaacggtacAGATTTTATAT
ATACGAAACTATCTATCTATCTTACTAATTTCGGGATATTTACAATAATA
TCGGAATTCTAGTTTAAGCAATGAATGCATAACTTAGGTAGCTCAAAtac
taataaaaaataaaaatattaaataaagtatttaggaaatctatatatta
atagcggtgNAAtactaataaaaaataaaagtattaAATAAAGTATTTAG
GAAATAGGTAATAAAACTGATATTAATTACGAGGAGTTTAATTTATGATG
AATAAAAATAGTCAAATCCCTTTCTGCTCTCTTGCAAAACCTTACAGTGC
ATTACGCCTATCTTGAAAACATACCCGTAGCCGATCAACTTGCCTGGCGT
TccgtttatatatttttttaataaacttgactgtttattttttatctcCG
TAGTATTGCAATCGAGGAAGCAGAGAACACAGTGAAGATCGATCCATTTC
GCGTGGCACAAATGTGTCATTGGACGGCATACTGTAAGCGTGCCTTGTCA
TTCAAAGAGCCCACACCTGAagagaaaatcaaaagttttgaagaagCTAT
CGAAACCTATCATAAAAGTAACGCGTTTCTTGACCGTTTAACGTGCGAAG
AAAGTGAAGTTTTGCGAGGAAGAAGCAACTGTGGTAAGAatcatcttctt
tttttctcaataaaaatctatacgctcttttttataagaaccagtattTT
TTTATGACACTAGGCTTTTCTTACTTCCTACTTGGCCCTTTGATCCTTGA
AACTTTTCTTTAGGGCAGTCTGAGGTTAGGCTTCATCCCTAATTTTTACT
AACTTTGACCATTATAATATTtgcttgaaattcagcaattccAAACTTGA
ATTGTTCTTCAGTTTTGACGATTTTGCAGCTTGACATTCCATTACAACTA
ATGTACAATATGACATTTAAACTGTGTTGCCAATTGTGAACGGTTCTCCG
ACTGCGAATATTCAATAAATCGTTCTctcaaagattttaaaagaagcACA
CCAAACATTACCCCATAGATCCCCCAAggtaaaagtaaacaaagtttCAG
GCAGATATTTCCCCAGCCTAAATGAAACACGCCAAATATACCCCACAGAT
CCCCCAAggtaaaagcaaacaaaaatttcaggCAGATATTTCCCCAGCCT
AAAAGAAACACGCCAAATATACCCCACAGATTCCCCAAGGtaaaagcaaa
caaagtttCAGGCAGATATTTCCCCAGCCTAAATGAAACACGCCAATTAC
CCCATAGATTCCCCAAggtaaaagcaaacaaaaatttcaggCAGATATTT
CCCCAGCCTACAAGTACACGAAACTCCAACCACAAAGACCACTCTCTCCA
CTTTCCATGCTACCCAGAAATTTTCAGACATGCAGACAAACTACACTGAT
ATCTACATTGATGACAGACACACAGTTaagaaagaaaacgaaaagaaaCA
GCAGAATCGATCTGACGGTTACTTGTAAACGATTTGAGTGAAGATAGTGA
TGAATATGTATACGCTTTTAATGAAAAGGATAAAAATAGTCAGCCCAAAG
ACATAGATTGCAAGGACATTGCAACACAACTACGTAACGAAAACAACACA
CAAAAACacaattgtaaaaaaaaaaaaagttaaattttgataaattacaG
GTATGGCTCACGTCATGTTGAAGATTTCAGACGAGAAAAAAACTCACGAT
TCTGACGAATTCCAAAGCATTGCTGCACCTTTGATCAAATCCTCAGTCGA
CGTCCTCGAAAAGTATAACGCAATACGGTATCTGATCGATGCGCTCGGTA
CACAATCACTGATCGTGCCTAATGGTCCTGAAttcttcgaagaaaaaaaa
cgaattcgAATGCGTGCTCTTGACTTATGTTTAAGAACATTCGGCGAGGT
CCACGATTTGTTTGTTACTAAATCGCGGAATTTTGGTGCCATCTTGAAAA
AGGCTGATGATTACGAATCGGCTTATGATTGGTATCATAGATCTCTGGTC
GCCAGTACAAAACTGTACGGTCCCGAGCATTCGTACACACAACTTGTTCA
GAAAGATCTTCAGGACCCAGTGTTTACGGACATAGCCGAACGACGATTTC
GTAGCGCTGAAGAGACGAAGCTACCGTTAGCAGTTGGGTACGAACCACCT
GAAAACAACGATGAGCAGATTGGGAAGAATCCGGGAAATGAatcaggcaa
gaaaaatgaaACTGGGGCATCTGATGACGAGAATGAACCCAATGGTGCGA
AATTAGAGATTGCCGAAAGAACAGATCGAAGTGGGATGTGCTGCTTTCTA
TAAATTGACACAAATACTTCTTTCATAATTATGAAATCGTTGTGAGGAAC
TATTCAATATTTCACATAGACAGTTAGACCTTTTTAGAAGGACGGCTTTC
TGCCTTTTCTCAGTCCGATCGATGTAAGAGAAAGCAAAAGATTAAGCTGA
AGTCATCGTATTGACTTTCAGCTCTTCCCGacttttaccaaaaataaaGT
GACCTTGGttaaaaattatttgataaatGCCCCATAGTGTGAACCCCCCT
TCTTTAAGGGGATCCAACTTTTCAAGAAAGGCTTTATAGGGTGGGATTTT
CCAAGTAAAATTGGGGGTTTGTGTTTTTAGGGGGgtattaaataaaaata
ggggaaataacaaattttttgcaaaaatatgtaTTTATCTTTAAATGGTC
AAAGAATTGGGTATAGTCCAACAAAATTACAATGTAATGGCAAATTTTTG
GTATTAAATTGTTTGTGAACCACCATTGTAGTTAGTGCGGGttcgaaaaa
atttttaaataggGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011303XLOC_011303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020112-exon-sc0000349-1491911889:196070..196287TCONS_00020112-exon-sc0000349-1491911889:196070..196287Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:196070..196287TCONS_00020112-exon-sc0000349-1510915933:196070..196287Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:196070..196287TCONS_00020112-exon-sc0000349-1575043694:196070..196287Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1491911889:197428..197952TCONS_00020112-exon-sc0000349-1491911889:197428..197952Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:197428..197952TCONS_00020112-exon-sc0000349-1510915933:197428..197952Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:197428..197952TCONS_00020112-exon-sc0000349-1575043694:197428..197952Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1491911889:198763..199205TCONS_00020112-exon-sc0000349-1491911889:198763..199205Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:198763..199205TCONS_00020112-exon-sc0000349-1510915933:198763..199205Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:198763..199205TCONS_00020112-exon-sc0000349-1575043694:198763..199205Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1491911889:199261..200681TCONS_00020112-exon-sc0000349-1491911889:199261..200681Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:199261..200681TCONS_00020112-exon-sc0000349-1510915933:199261..200681Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:199261..200681TCONS_00020112-exon-sc0000349-1575043694:199261..200681Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1491911889:201373..201602TCONS_00020112-exon-sc0000349-1491911889:201373..201602Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:201373..201602TCONS_00020112-exon-sc0000349-1510915933:201373..201602Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:201373..201602TCONS_00020112-exon-sc0000349-1575043694:201373..201602Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1491911889:202620..203788TCONS_00020112-exon-sc0000349-1491911889:202620..203788Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1510915933:202620..203788TCONS_00020112-exon-sc0000349-1510915933:202620..203788Clytia hemisphaericaexon
TCONS_00020112-exon-sc0000349-1575043694:202620..203788TCONS_00020112-exon-sc0000349-1575043694:202620..203788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:196070..203788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.69709	10.72	3.48746	7.70584	1.24573	2.97483	3.65721	0.220937	0.178904	0.646982	2.71739	1.72542	5.11341	6.00973	4.70505	4.17348	1.09281	1.70565	0	0.184183	0.00183385	0.447788	0	0.286818
Blast
[Close]
BLAST of TCONS_00020112 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 8.913e-43
Identity = 188/720 (26.11%), Postives = 317/720 (44.03%), Query Frame = 2 
Query:  392 NRRGWRTIRIFVSSTFKDFLNEREILVKELFPDLRLWCEERKLRLIECDLKWGVPIGTTGSET-----IQICLGELDRCCEENHVPFFLNLCAERVGWIPTSEELTANLTSHYGWVH----GLSITEMEIVHGALR--KMNPN--ALFMIREADSLEGLPDHIVEAFKESNERSVEKLSMLKTKVAEAFPSNHHFYQVKGNYVKDDDNRENVTFEGLNGDFYQKVFSFFKERIEMLYPLEDSP--EDPIEVQRE--AHLTFMETRSKSVLGRDQQLGE-IQYYIRNDQTYSPLVLVGQSGAGKSSIIARSARDVCDMIDDGQLSGKVFVHFVGATPGSTDLVSFLKRIVAELSPDNKESISDLQGYVQLVC----RLLSK--EEIGP---VYLFIDAINQMDEDKQYYLARWLPCQLAQNIRVVISTIENTDTHQILTKFVPAPKEIACGPLDETSREEIVRNILRDYTKELHP----DQMRLLISKKGSSNPLWLAVACEELRVEAVFETVTSMIEAFPNELIDMEVNLINRLVRGENGDQIKSALLLLEVSRHGXXXXXXXXXXXXKNLHLVGS---TFEEGDEN--EKVKPG-CKKTIPARDWAIIYRNIKQLL------RPCGN--LGDGRLDFYHRSLSKAVRKQFLSGSPGEEKKHVYVHWHRVLADYFEKATDDDRRAE----------ELPYHLEQLSDSARLEKCLIDWNI 2386
            +++GWR+IR+F+SSTF+D   ER++L++ + P L+      ++ L   DL+WGV    T  ET     +++CLGE++      +   F+ +   R G+IP S  L  +   H+ W      G S+TEME++    R  ++ P+  AL   R++  L  +PD     F   +E +  ++S LK+ ++         Y  +   V          + G   +F Q V       I+ LY L+     E P+ +  +     TF + +      R + L + +Q  +      S  ++ GQSG GK++ +A S        D  +++  VF HF GA P     ++ L+R+   L    KE  +    Y  LV     RLL K  E + P     L ID  +++ +     ++ W+P +L + + +V+S   +    + L +   A   +A GPL+ ++R  +VR  L  Y K L      +QMRLL+ K+ S  PL+L +  + LR+  ++E V+  +   P  +  +  ++++ L +    D +  AL  LEV+R G         L    LH V S   T  +G ++  E V  G      P   +A + ++++ LL      RP     L DG L        +   K+     PG E        H ++A    K  D D              +LPYHL Q  +   L K L + ++
Sbjct:  892 SQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGV----TEEETRRNRQLEVCLGEVE------NAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVA-----AGRPYVGGLEEFGQLVLQDVWNMIQKLY-LQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHGRLS--LVTGQSGQGKTAFLA-SLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGA-HVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSG---------LTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPL--------RTAAKRCYGKRPGLEDTA-----HILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHV 1567
The following BLAST results are available for this feature:
BLAST of TCONS_00020112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEP18.913e-4326.11Telomerase protein component 1 OS=Homo sapiens GN=... [more]
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