TCONS_00020114 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020114
Unique NameTCONS_00020114
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020114 ID=TCONS_00020114|Name=TCONS_00020114|organism=Clytia hemisphaerica|type=transcript|length=2015bp
CTAAtacaaaaagtttgcaaaacttttaaacaacAATAATTTACCGAATT
TTTTTGCATAATCTTTTTGCGCAGAGCTGCAAAGAGctgaattttgaaag
tttgactgctttgaaattttagtgGAAAAAATGTCGTAACTTATTGCTTT
TTGTGGTGTAGATTGTAttatttttggtgattttgtaTTAATTTTTTGTC
CATGGTTTGTTTGTTCGAAACTTGATTTGAAATGTTGTGTTGAAATGTCA
CAATTTAGCTAAGCGTAATGACTTGTTAGCTCGTAAGCATGTTAAATTGT
AAAGTTCGATTTAAACCAGCCCTCTTGGCTTGGCGATTGACGATCCTCCT
GCTATTGGGAATAGGAGATGTTTACGCTCAGAAATGTACAATAGACAGTA
TCAAAGTAGGTTATTCCTTAAAAAACGGACTAGATACAGAGAATGTCAAA
TTATTAGGTGACGATCTTGAATTTGAAGGATGTCGTAAATTATGTTGCAA
ATCTCAGATATTCCAATATGGTTTACATGATGGTTCGAAATGTTTTGGTA
TACATTGCCAAGGTAACGCAGATCCACATTGCACCTTGATGGAGGATGGC
AATGCAGTGTTCTCCATATTTGCACTAAAGAGAGAAGGCTCTTCTTCAGC
ACAAGGCCTCAACTCGAAGAACAATGTAAATAAACAAGATCAACAAAATA
TGCAGTATAAAACAAAAGACAATAAACAGCAACAAAAACATGTTAACAAT
GCACACCATTCACAAGAAACTTCAAAGACACTTATACAACAAAgttataa
taaaaacaacaataagCATAAACACAAACACAAACACCACCATAGCCACC
ACCATCACCACCACCATAAGAAACATAAGAAGCGTGTTACTAGAGACTTC
CCATATGATTATTATAATACCCCACTATGGAGGCTAACCGGGCCTCGAAA
TAATCCACTCTCATCTAATACACAGACATTAAATTCACCTTATAATGCTA
GACAATATATTACTAATAATTTAAACACCTATCAACAACAGCAGCCGAAC
TTTATGAATACGAATCAAAGGTCTTTTATACCGCAAGGACAATGGTTTAA
TTTTCCGGCTTTTCAACAGAGGGGGACTGTCCCGTTTTTAAGCGGGTCGC
CTACTTCCCCGGGGAAACCTGCCCCAGTAGTTGTTAATAGTAAGAAAAGT
ACTGTGTATAAACCGACTTTTGATTTAATGGCAAGTAGTAATGCAATTAA
ACCGAAATCAAACAAGGTGATTAAGAGTTTTANGCTTCTGTCCCGGGGAA
ACCTGCCCCAGTAGTTGTTAATAGTAAGAAAAGTACTGTGTATAAACCGA
CTTTTGATTTAATGGCAAGTAGTAATGCAATTAAACCGAAATCAAACAAG
GTGATTAAGAGTTTTATTAACCCGAAGATCGAATCACCAAAATACGATAT
AGTTAAAAAGACAAACGTACCGTTAAGaccaaatattaaaaaattggaGA
CACCGAACCCAGATGAAACGCGGAAAGAAAAGGATAAAATTATGTCACAA
ATTAATGTTGAGCCGCTTACAGAATTTCCTACGGATGAATCGCCTGAAGT
GAGAGTTGAGAAAGATGCTATTCCAAGACCGCCATCGCCATCTTCTGTCA
ATTTGGCGCCCGATTCGTCTGCGGGTATATTTGAACCTGTTCACCAACTT
GCAGCTAAAGATAATATTTATGATATCCCGAATTCACATCCGATCGAAGC
GTTGAGAGGAGTACACAGTTTTTTCCCAGGTTGTTTACATCCTGTTGGAG
TGAGTCGTCCTTCTCAGATCCCTGATGATCGTTTTTCTGCAACTTCAAGT
ATGCAAGGTTTCCCAGCTCATGATGCAAGATTGAAAGTCGCTTACGAAGA
CAAAGGAGGATCATGGTGTGCTGATAAGAACTCAACAGACATTGGTATCC
CACAATACCTTTCGATTGATTTCGGACAACAAACCATGTTTTGTAGGATT
GGCATGCAAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000349:270055..275460+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020114 ID=TCONS_00020114|Name=TCONS_00020114|organism=Clytia hemisphaerica|type=transcript|length=5406bp|location=Sequence derived from alignment at sc0000349:270055..275460+ (Clytia hemisphaerica)
CTAAtacaaaaagtttgcaaaacttttaaacaacAATAATTTACCGAATT
TTTTTGCATAATCTTTTTGCGCAGAGCTGCAAAGAGctgaattttgaaag
tttgactgctttgaaattttagtgGAAAAAATGTCGTAACTTATTGCTTT
TTGTGGTGTAGATTGTAttatttttggtgattttgtaTTAATTTTTTGTC
CATGGTTTGTTTGTTCGAAACTTGATTTGAAATGTTGTGTTGAAATGTCA
CAATTTAGCTAAGCGTAATGACTTGTTAGCTCGTAAGCATGTTAAATTGT
AAAGTTCGATTTAAACCAGCCCTCTTGGCTTGGCGATTGACGATCCTCCT
GCTATTGGGAATAGGTTAGTGTCTTTATTATTTACTGACCTACGAATCAT
TTGGAATGGATATAGACCCTATACATACACCACTTTCCTATGACATTCCC
ATGGACATCTCATCTTTGTCTTCCGCAGCAAATCTGAATTGTACAACTAG
GCTGTAATCGATAATTGATCTGCTTATTTTTATCTGATCAATCATATTGG
CTCAAACTATATTCCCCACGCTTGCTTGTAATATACCTCTGCAGATGTTC
ATAATGAAGTCTATCTACAATCAGTGTAGTTATATGATGGCAGTATACCC
TTGAAATAATTTGATAGCTTTGCTAACAGACTCATTTAACCTTGAGGCCC
CTAAATTCAATGAATAAGCCCTAGAGAGCTGAACCCTAATATTGAAGTTT
GAGGAGGGGTTTATGCAAAATAccgggaaaacacaaatattctaGGGCTC
ATATTAGATATGTACACCCTGCAAGTTGTTACTAAAGGTATCCTTTCcat
atttttcaagaatttaccCCATTTATGACAATAAGACGTAAGAACCTAAA
CTAGTTACATTCCTGTTTAGAATGTTAAAGGTCAAAAACCATATATTTTC
CTCGACAGTTAGCGCTAACATTCTCTGCTTTCTCAATTGACTTTCATTTC
CTACCACATTTCCTTTTATCAACCTGTTCCCAGGGCAAATGTGCCTTTAC
TTTTATATAAGtgctcccgtttcatatcagacacatatttcatatcagga
cggtgtctccctgttgttatattgtgctgaataaacaaaaaactttcctc
tttctgaccaatcttgctctgTATTCGTCTCaattcaaaataagaaagct
tgtaaattaagattgatgagtaaccaaacgatatcactctattatttata
aacaaaacctttaagactTATCAAAACTGGAATACCTTTTAATCATTTCC
ACTTTTNgagaaaacttgtaaattaagattgatgagtaaccaaacgatat
cactctattatttaagaacaaaacctttaagactAATTGAAACTTTTTAA
TCATTTCCACATTTCTTTTCTACCTTTTTCAGGAGATGTTTACGCTCAGA
AATGTACAATAGACAGTATCAAAGTAGGTTATTCCTTAAAAAACGGACTA
GATACAGAGAATGTCAAATTATTAGGTGACGATCTTGAATTTGAAGGATG
TCGTAAATTATGTTGCAAATCTCAGATATTCCAATATGGTTTACATGATG
GTTCGAAATGTTTTGGTATACATTGCCAAGGTAACGCAGATCCACATTGC
ACCTTGATGGAGGATGGCAATGCAGTGTTCTCCATATTTGCACTAAAGAG
AGAAGGCTCTTCTTCAGCACAAGGTAGTGGTGATTACGTTTCAAAATTCC
TTATTTACATgatcacacccctgtctcacggACCCGGTTGAGTCCCAacc
tactggaaaatttggtcaaaatttggtccctggtgggaaaaatatcctaT
AATTTCAGCCCATTCgaaaatttactttgatttcatacccattcgaaatt
caatgtagaaaaattgcactctaaaaaCCGGCCCCACCTGTTTTTTGAAC
TTGGAACaatggaatttctatccccattgggattttgacaGAAATGTTTA
TCCCGCTGTGGGAAAAATTccaacggggctgtgagacaggggtgtgtggT
CTTACTATTTGCTTATGATTTGATCATTAGATTTGATAAATGATTCTCCT
TTTACCTTTGACACTTTACTTACAAATTTGTTAATATCTACGTTTTGAAA
GGGCTTTCAAAGGGTTTTAGGGAATTTCGAACCTGTTTACGAAATTCCAT
GAATTTTGTCCatctggctgaaaaaaaaagaaaaaaccttttcttATATA
GAATTTATTTTGCGaagaaactttttaaaaataaaacttcccTTAGCAGA
TTAATGTTCACagcgtccatttaacgttagatgaacgttgaaacaacgtt
gtgtgtcagctgggatgtCATTTCGGGTAAACAAAATACCACAAGTTTCT
TGGTAGTGCTACATGGttctaattttcttttcattgtaCTTTTTAAGGCC
TCAACTCGAAGAACAATGTAAATAAACAAGATCAACAAAATATGCAGTAT
AAAACAAAAGACAATAAACAGCAACAAAAACATGTTAACAATGCACACCA
TTCACAAGAAACTTCAAAGACACTTATACAACAAAgttataataaaaaca
acaataagCATAAACACAAACACAAACACCACCATAGCCACCACCATCAC
CACCACCATAAGAAACATAAGAAGCGTGTTACTAGAGACTTCCCATATGA
TTATTATAATACCCCACTATGGAGGCTAACCGGGCCTCGAAATAATCCAC
TCTCATCTAATACACAGACATTAAATTCACCTTATAATGCTAGACAATAT
ATTACTAATAATTTAAACACCTATCAACAACAGCAGCCGAACTTTATGAA
TACGAATCAAAGGTCTTTTATACCGCAAGGACAATGGTTTAATTTTCCGG
CTTTTCAACAGAGGGGGACTGTCCCGTTTTTAAGCGGGTCGCCTACTTCC
CCGGGGAAACCTGCCCCAGTAGTTGTTAATAGTAAGAAAAGTACTGTGTA
TAAACCGACTTTTGATTTAATGGCAAGTAGTAATGCAATTAAACCGAAAT
CAAACAAGGTGATTAAGAGTTTTANGCTTCTGTCCCGGGGAAACCTGCCC
CAGTAGTTGTTAATAGTAAGAAAAGTACTGTGTATAAACCGACTTTTGAT
TTAATGGCAAGTAGTAATGCAATTAAACCGAAATCAAACAAGGTGATTAA
GAGTTTTATTAACCCGAAGATCGAATCACCAAAATACGATATAGTTAAAA
AGACAAACGTACCGTTAAGaccaaatattaaaaaattggaGACACCGAAC
CCAGATGAAACGCGGAAAGAAAAGGATAAAATTATGTCACAAATTAATGT
TGAGCCGCTTACAGAATTTCCTACGGATGAATCGCCTGAAGTGAGAGTTG
AGAAAGATGCTATTCCAAGACCGCCATCGCCATCTTCTGTCAATTTGGCG
CCCGATTCGTCTGCGGGTATATTTGAACCTGTTCACCAACTTGCAGCTAA
AGATAATATTTATGATATCCCGAATTCACATCCGATCGAAGCGTTGAGAG
GAGTACACAGTTTTTTCCCAGGTAAGGTCTTTTGTCTTTcatatgttttg
aatttgaatcGTTAAGACTTTTTCGTAGCTGCTGCTGCAGGACGATTTTT
TGTTCCTTTAAAAACACTTAAAAACAATCAATTAATTTAAATTCGGACAG
CTTGGGAAAACTTAGAGTAGGTTTTAATGCATTGGGGGAGATTTATCTTT
GCTTATTTTGAAACGTGGTCGGTTGTGATGTTTCAGGAGggatttctttc
gaaaaaaaaagattttatcattttggaatatcttttttttctagGGTTGT
TATTATTGAAGAATCCTTATAAACGACGTTTGAATAACATTCTATCACCG
CCACCACCATTACCACCATCACCGCCACTTACGCCCTCACATCCATCATC
ACCATACATTTCATCTCATACACCACCATATCCATCATCACCAACAATAC
CAACATATTCATCTAAagagattgaaaataaaatctattccATGCTTTAT
CCTATATCTACAATGCAACGTCATTCATTCcaaaaattgttcttacaaCG
TAAGATTCACAACAATACACTGATCTTCATAAACTCTGGACTAAgcatat
ccaccatctttgatcgcAGTTTCTTTGAAAGTAGTACCCGTAAAGAATCC
TGTAGTGTTGAAGATTAACGTCAATCGACGCAACATCATCGCAAGTATTC
AAGGAAAAGTTAACCTTGCACTATTGATGCATTTACACtactattgagta
gtgctaccattaggctaccactttcaaaaacaaaattccgatcaaagatt
ttggccGGGATTGAAAAACTGTCTCCAGGGCGGTTTATATAAAGTTCAGT
CAAAATTCTTAACCCCCTGTGTATATAAAGACAAGAAAAGTCATAGGGCA
ATATTTAGAGGGTGACATAACTTTTCCCCGATAAAATTTTTCCATGACCA
GTTTTGACAGAATTTTCGACAAATCGACCAAATTTTTGGGTGGGAATGAG
TATGTCATCGTCATATATTTCACCATTACTAATCTGTCATACCTCTTAGC
ATCGCTCTCTCATCATTTCTAATTCAGCATTCCCGTCCTAACTTACGCAA
CACACTTTACAAATTTGCATCTAGCATCCCAAagttttagcaaaaaaaaa
aaaaaatttctaaggcTATTTTATTCATACATTCATACCATTGACCTACC
ACTCTATCGCACACACACATTCCAAAAAAATCACCATGACATTTATTCAT
AATATCCAGATCAACCAAAGTATAATCTTGAATCTTATAATGATACAAGA
TTATTGTATTATTCCACACTACAATAGGTTGTTTACATCCTGTTGGAGTG
AGTCGTCCTTCTCAGATCCCTGATGATCGTTTTTCTGCAACTTCAAGTAT
GCAAGGTTTCCCAGCTCATGATGCAAGATTGAAAGTCGCTTACGAAGGTA
TGTGTTTACTTCCccattcttgatattcatgatgtaatgtctACTGCGAA
AACACCCCGGTTTTCGCCAGCAGGATTAAATTAACGTTATagcgaaaaat
tcttttgaatttgccactactgaCAAAAACTTGAGTTTGAAGGTTTGaac
caaatatgaaaaataagcTCTATTTAGAGAAAAATAGATGGCGAATTCCA
GATTTTTCCGGGTGTCCTCGGTAGGAAAAATAGCATGATACATAcactat
gaaaatgaaaattcaaaatgtgtTCCCGCTGTTCTTGTAGACAAAGGAGG
ATCATGGTGTGCTGATAAGAACTCAACAGACATTGGTATCCCACAATACC
TTTCGATTGATTTCGGACAACAAACCATGTTTTGTAGGATTGGCATGCAA
GGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011303XLOC_011303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020114-exon-sc0000349-1491911889:270055..270418TCONS_00020114-exon-sc0000349-1491911889:270055..270418Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1510915933:270055..270418TCONS_00020114-exon-sc0000349-1510915933:270055..270418Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1575043694:270055..270418TCONS_00020114-exon-sc0000349-1575043694:270055..270418Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1491911889:271487..271777TCONS_00020114-exon-sc0000349-1491911889:271487..271777Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1510915933:271487..271777TCONS_00020114-exon-sc0000349-1510915933:271487..271777Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1575043694:271487..271777TCONS_00020114-exon-sc0000349-1575043694:271487..271777Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1491911889:272502..273625TCONS_00020114-exon-sc0000349-1491911889:272502..273625Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1510915933:272502..273625TCONS_00020114-exon-sc0000349-1510915933:272502..273625Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1575043694:272502..273625TCONS_00020114-exon-sc0000349-1575043694:272502..273625Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1491911889:274932..275051TCONS_00020114-exon-sc0000349-1491911889:274932..275051Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1510915933:274932..275051TCONS_00020114-exon-sc0000349-1510915933:274932..275051Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1575043694:274932..275051TCONS_00020114-exon-sc0000349-1575043694:274932..275051Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1491911889:275345..275460TCONS_00020114-exon-sc0000349-1491911889:275345..275460Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1510915933:275345..275460TCONS_00020114-exon-sc0000349-1510915933:275345..275460Clytia hemisphaericaexon
TCONS_00020114-exon-sc0000349-1575043694:275345..275460TCONS_00020114-exon-sc0000349-1575043694:275345..275460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:270055..275460 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34537	0.137058	0	0.195846	0	0	3.72723	2.90155	0.314127	0.244113	0.50768	0.964057	2.50198	2.06546	1.6588	5.47652	2.08324	2.10119	0	0	1.12722	0.883142	1.3533	0.852348	1.65269	2.45043	0.360805	0.185369	0.38463	0.250893
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020114 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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