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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020127 ID=TCONS_00020127|Name=TCONS_00020127|organism=Clytia hemisphaerica|type=transcript|length=1689bp
acgcttttttacaaagaaaattcttaaaactaaaaattggaaaaaaacta
TTCAAGGAAAATCCTAGACTTGACATTGAGGAAATCTTCAATCTGTAGAG
AAATAATACTTAATGTTGGGACTAAGAGACATGGTCAGCCAACTGtttag
agaaaaagattttggcgcaaaaatcacaaaactAACTTCACTTTTTAGCT
ACGGAAAGCTTAGACCCAGACTAAGCTTTTTGGGCACTTTNCCATTAGCT
CAGGCTCtatataatcttttttttaaatttagactAATGATAATGTagga
ttttcttttttaacatAGCCATTCAATCCATCCTGTTCATATTCATCTAA
ATCGTCCGGATCTGATTCTTCATCTGAATCAGTCAGCCGGACGGGTAACG
GAATCTTGACTGCAATATCATTCGAACTTCTCGGTTGTTCAGAGAAATTA
GTTAAAGCCATTAAATCCAATAATTTCTCATGTTCAGCAAAATCAAATTC
TTCATTGGTTTCATCCAGAGTTAAATCATCCATTGATTCTTGTAAGTAGT
TGGGAATCTCACCATAATTCTGTAAACCGTATTTCTTACCGAATTCAAAC
GCACGCCGTAACTCACCTACAGAGCTACTACACGTTGACGAAACTGAATC
AAATGAACGCGTAGCTTTCTGTAACGCGTCTCGTACTATCGCTACGTGTC
TCTCAAGGGCCGGCGTATTGCTCACATTTGCATGATTCGTCAAAATTTGT
TGCTCCTCGATATCTTCTAACGTTTTTAATAACAAACTATCTAAACTTTT
ACGATTCCGTTTTCCACGTCTCGGTGGTTCCCCGTCTTTCTTGAACAGCG
CACGTGGTGCATCCGAGTAATCCGATAAACTACTTATAATATCCCGATAA
TTAGGCGGTGACGGTTTACTTGGATCACCCGTTTCGGGTTCATCGGAATA
AAGTTCGTTATACTCTGGTGGGCTGACTGGTAATTGTTCTATTTGTTGGA
TATTGTCTTTAGGAGCTGTTATTTGTGAATTGACTCCACCTCCATCAAGC
TCTGTAAAGTCTATTGAATCTTCCGTAAGAATACTATTCCGTACGTTATC
ATCTCCGGTTGCGAATCGATTACCGTATCCATTTTGTTTGAGAGCCGTGT
TTCCACACTGTTCTTgcgattgaaaatatttctctaTAATAGACGGAGTT
GATGCGTATCTACTTGATATGGGTCTCTCTGCCGTGTTATTAATAGCCTG
TGTTCTCGGAGGAGCTACCCTCACTCCGACATCGCTCCCCGCACCTCTCT
TGTTACCGTTTGAAAGTTTCGGTTGCGGATTACCGGCAGCAAAGGAATGA
TTATCCGGTGTTTTACTTGGTGTAAAGAGTACTACCGGCTCAAAATCATT
AAATTTGTTAGTGTTTTGCATTTTTGGTCGTCCCAGGCTCCCGCCGGACG
CATTCCCGTTTTGTTGTAAAGCGTTATAATTGAACGCAGTTCCATTGCAA
TATTTCATCTCTATAGTATCGTTTGGTAGTAACTCATCTTTCATATCAAA
GGCTCCACTGTGTCGGTTTTGTTTGATATTCCACGGCCACAAAAGGCCAG
GCTCGCCGTATGGAGCTGGGTTATATTCTTTATGTTGCTTACAAGAGCAT
CGGCAGATTAGACGGCTACAACGCGGCTCTGAAACATAA Run BLAST on NCBI transcript from alignment at sc0000349:309620..311603+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020127 ID=TCONS_00020127|Name=TCONS_00020127|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at sc0000349:309620..311603+ (Clytia hemisphaerica)
acgcttttttacaaagaaaattcttaaaactaaaaattggaaaaaaacta
TTCAAGGAAAATCCTAGACTTGACATTGAGGAAATCTTCAATCTGTAGAG
AAATAATACTTAATGTTGGGACTAAGAGACATGGTCAGCCAACTGtttag
agaaaaagattttggcgcaaaaatcacaaaactAACTTCACTTTTTAGCT
ACGGAAAGCTTAGACCCAGACTAAGCTTTTTGGGCACTTTGTCATTAGAT
CAGGCTCTATATAATCTTTTTTATCTAGACAAGATATAAAAATTTAGACC
AATGATAATGTaggattttcttttttaacatAGCCATTCAATCCATCCTG
TTCATATTCATCTAAATCGTCCGGATCTGATTCTTCATCTGAATCAGTCA
GCCGGACAGGTAACGGAATCTTGACTGCAATATCATTCGAACTTCTCGGT
TGTTCAGAGAAATTGGTTAAAGCCATTAAATCCAATAATTTCTCATGCTC
AGCAAAATCAAATTCTTCATTGGTTTCATCCAGAGNCCATTAGCTCAGGC
TCtatataatcttttttttaaatttagactAATGATAATGTaggattttc
ttttttaacatAGCCATTCAATCCATCCTGTTCATATTCATCTAAATCGT
CCGGATCTGATTCTTCATCTGAATCAGTCAGCCGGACGGGTAACGGAATC
TTGACTGCAATATCATTCGAACTTCTCGGTTGTTCAGAGAAATTAGTTAA
AGCCATTAAATCCAATAATTTCTCATGTTCAGCAAAATCAAATTCTTCAT
TGGTTTCATCCAGAGTTAAATCATCCATTGATTCTTGTAAGTAGTTGGGA
ATCTCACCATAATTCTGTAAACCGTATTTCTTACCGAATTCAAACGCACG
CCGTAACTCACCTACAGAGCTACTACACGTTGACGAAACTGAATCAAATG
AACGCGTAGCTTTCTGTAACGCGTCTCGTACTATCGCTACGTGTCTCTCA
AGGGCCGGCGTATTGCTCACATTTGCATGATTCGTCAAAATTTGTTGCTC
CTCGATATCTTCTAACGTTTTTAATAACAAACTATCTAAACTTTTACGAT
TCCGTTTTCCACGTCTCGGTGGTTCCCCGTCTTTCTTGAACAGCGCACGT
GGTGCATCCGAGTAATCCGATAAACTACTTATAATATCCCGATAATTAGG
CGGTGACGGTTTACTTGGATCACCCGTTTCGGGTTCATCGGAATAAAGTT
CGTTATACTCTGGTGGGCTGACTGGTAATTGTTCTATTTGTTGGATATTG
TCTTTAGGAGCTGTTATTTGTGAATTGACTCCACCTCCATCAAGCTCTGT
AAAGTCTATTGAATCTTCCGTAAGAATACTATTCCGTACGTTATCATCTC
CGGTTGCGAATCGATTACCGTATCCATTTTGTTTGAGAGCCGTGTTTCCA
CACTGTTCTTgcgattgaaaatatttctctaTAATAGACGGAGTTGATGC
GTATCTACTTGATATGGGTCTCTCTGCCGTGTTATTAATAGCCTGTGTTC
TCGGAGGAGCTACCCTCACTCCGACATCGCTCCCCGCACCTCTCTTGTTA
CCGTTTGAAAGTTTCGGTTGCGGATTACCGGCAGCAAAGGAATGATTATC
CGGTGTTTTACTTGGTGTAAAGAGTACTACCGGCTCAAAATCATTAAATT
TGTTAGTGTTTTGCATTTTTGGTCGTCCCAGGCTCCCGCCGGACGCATTC
CCGTTTTGTTGTAAAGCGTTATAATTGAACGCAGTTCCATTGCAATATTT
CATCTCTATAGTATCGTTTGGTAGTAACTCATCTTTCATATCAAAGGCTC
CACTGTGTCGGTTTTGTTTGATATTCCACGGCCACAAAAGGCCAGGCTCG
CCGTATGGAGCTGGGTTATATTCTTTATGTTGCTTACAAGAGCATCGGCA
GATTAGACGGCTACAACGCGGCTCTGAAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020127-exon-sc0000349-1491911889:309620..309859 | TCONS_00020127-exon-sc0000349-1491911889:309620..309859 | Clytia hemisphaerica | exon |
| TCONS_00020127-exon-sc0000349-1510915933:309620..309859 | TCONS_00020127-exon-sc0000349-1510915933:309620..309859 | Clytia hemisphaerica | exon |
| TCONS_00020127-exon-sc0000349-1575043694:309620..309859 | TCONS_00020127-exon-sc0000349-1575043694:309620..309859 | Clytia hemisphaerica | exon |
| TCONS_00020127-exon-sc0000349-1491911889:310155..311603 | TCONS_00020127-exon-sc0000349-1491911889:310155..311603 | Clytia hemisphaerica | exon |
| TCONS_00020127-exon-sc0000349-1510915933:310155..311603 | TCONS_00020127-exon-sc0000349-1510915933:310155..311603 | Clytia hemisphaerica | exon |
| TCONS_00020127-exon-sc0000349-1575043694:310155..311603 | TCONS_00020127-exon-sc0000349-1575043694:310155..311603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349 | supercontig | sc0000349:309620..311603 + |
Blast
The following BLAST results are available for this feature:
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