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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020135 ID=TCONS_00020135|Name=TCONS_00020135|organism=Clytia hemisphaerica|type=transcript|length=718bp
AAAGATAAAtacatatttttgcaaaaaGATTTCATAATTATGAAAGAAGT
ATTTGTGTCAATTTATAGAAAGCAGCACATCCCACTTCGATCTGTTCTTT
CGGCAATCTCTAATTTCGCACCATTGGGTTCATTCTCGTCATCAGATGCC
CCAGTttcatttttcttgcctgatTCATTTCCCGGATTCTTCCCAATCTG
CTCATCGTTGTTTTCAGGTGGTTCGTACCCAACTGCTAACGGTAGCTTCG
TCTCTTCAGCGCTACGAAATCGTCGTTCGGCTATGTCCGTAAACACTGGG
TCCTGAAGATCTTTCTGAACAAGTTGTGTGTACGAATGCTCGGGACCGTA
CAGTTTTGTACTGGCGACCAGAGATCTATGATACCAATCATAAGCCGATT
CGTAATCATCAGCCTTTTTCAAGATGGCACCAAAATTCCGCGATTTAGTA
ACAAACAAATCGTGGACCTCGCCGAATGTTCTTAAACATAAGTCAAGAGC
ACGCATTcgaattcgttttttttcttcgaagaaTTCAGGACCATTAGGCA
CGATCAGTGATTGTGTACCGAGCGCATCGATCAGATACCGTATTGCGTTA
TACTTTTCGAGGACGTCGACTGAGGATTTGATCAAAGGTGCAGCAATGCT
TTGGAATTCGTCAGAATCGTGAGTTTTTTTCTCGTCTGAAATCTTCAACA
TGACGTGAGCCATACCtg Run BLAST on NCBI transcript from alignment at sc0000349:202617..203661- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020135 ID=TCONS_00020135|Name=TCONS_00020135|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0000349:202617..203661- (Clytia hemisphaerica)
AAAGATAAATACATATTTTTGCAAAAAATTTGTTATTTCCCCTATTTTTA
TTTAATACCCCCCTAAAAACACAAACCCCCAATTTTACTTGGAAAATCCC
ACCCTATAAAGCCTTTCTTGAAAAGTTGGATCCCCTTAAAGAAGGGGGGT
TCACACTATGGGGCATTTATCAAATAATTTTTAACCAAGGTCACTTTATT
TTTGGTAAAAGTCGGGAAGAGCTGAAAGTCAATACGATGACTTCAGCTTA
ATCTTTTGCTTTCTCTTACATCGATCGGACTGAGAAAAGGCAGAAAGCCG
TCCTTCTAAAAAGGTCTAACTGTCTATGTGAAATATTGAATAGTTCCTCA
CAACGATTTCATAATTATGAAAGAAGTATTTGTGTCAATTTATAGAAAGC
AGCACATCCCACTTCGATCTGTTCTTTCGGCAATCTCTAATTTCGCACCA
TTGGGTTCATTCTCGTCATCAGATGCCCCAGTTTCATTTTTCTTGCCTGA
TTCATTTCCCGGATTCTTCCCAATCTGCTCATCGTTGTTTTCAGGTGGTT
CGTACCCAACTGCTAACGGTAGCTTCGTCTCTTCAGCGCTACGAAATCGT
CGTTCGGCTATGTCCGTAAACACTGGGTCCTGAAGATCTTTCTGAACAAG
TTGTGTGTACGAATGCTCGGGACCGTACAGTTTTGTACTGGCGACCAGAG
ATCTATGATACCAATCATAAGCCGATTCGTAATCATCAGCCTTTTTCAAG
ATGGCACCAAAATTCCGCGATTTAGTAACAAACAAATCGTGGACCTCGCC
GAATGTTCTTAAACATAAGTCAAGAGCACGCATTCGAATTCGTTTTTTTT
CTTCGAAGAATTCAGGACCATTAGGCACGATCAGTGATTGTGTACCGAGC
GCATCGATCAGATACCGTATTGCGTTATACTTTTCGAGGACGTCGACTGA
GGATTTGATCAAAGGTGCAGCAATGCTTTGGAATTCGTCAGAATCGTGAG
TTTTTTTCTCGTCTGAAATCTTCAACATGACGTGAGCCATACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020135-exon-sc0000349-1575043694:203635..203661 | TCONS_00020135-exon-sc0000349-1575043694:203635..203661 | Clytia hemisphaerica | exon |
| TCONS_00020135-exon-sc0000349-1575043694:202617..203307 | TCONS_00020135-exon-sc0000349-1575043694:202617..203307 | Clytia hemisphaerica | exon |
| TCONS_00020135-exon-sc0000349-1510915933:203635..203661 | TCONS_00020135-exon-sc0000349-1510915933:203635..203661 | Clytia hemisphaerica | exon |
| TCONS_00020135-exon-sc0000349-1510915933:202617..203307 | TCONS_00020135-exon-sc0000349-1510915933:202617..203307 | Clytia hemisphaerica | exon |
| TCONS_00020135-exon-sc0000349-1491911889:203635..203661 | TCONS_00020135-exon-sc0000349-1491911889:203635..203661 | Clytia hemisphaerica | exon |
| TCONS_00020135-exon-sc0000349-1491911889:202617..203307 | TCONS_00020135-exon-sc0000349-1491911889:202617..203307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000349 | supercontig | sc0000349:202617..203661 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011991 | WHTH_DNA-bd_dom |
Blast
The following BLAST results are available for this feature:
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