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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020140 ID=TCONS_00020140|Name=TCONS_00020140|organism=Clytia hemisphaerica|type=transcript|length=2396bpRun BLAST on NCBI transcript from alignment at sc0000349:315612..321406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020140 ID=TCONS_00020140|Name=TCONS_00020140|organism=Clytia hemisphaerica|type=transcript|length=5795bp|location=Sequence derived from alignment at sc0000349:315612..321406- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020140 vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 5.635e-52 Identity = 125/394 (31.73%), Postives = 194/394 (49.24%), Query Frame = 1
Query: 1192 YTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKVLFKDEPKDTSVLYKHATSLACLATGFPAPQIIWM--KKSPDDFFEPIQLTNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHVKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGAIIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVVNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTIVAIAKDKFLLQWKHPSKTSRNGILTRYQISF 2364
+TS++ I ++ H+G YTCIARN A + +V F +P+D +Y A L C A G+P P I+W K + F+PI L R+Q L+NG+L I D G Y CK D V S++ ++ VK+PA ++ S P +G + C+ G + V+W II+ ++Y + T E +G + STL I + D+ + C N YG ++ + V+E P P I + D ++ L WT G++GN I+ Y I+ K ++D W AQ T V+ ++++HP + Y +R+ AKNRIG S+ S+ + E AP PPQ V + I+ + WK P K +NGI+ YQI +
Sbjct: 650 FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGY 1024 HSP 2 Score: 123.635 bits (309), Expect = 1.527e-28 Identity = 98/359 (27.30%), Postives = 160/359 (44.57%), Query Frame = 3
Query: 117 FKCKAIGSMPIIYHWFKNGQKLSSETDVTITSGEKGVGSVLEIQDIDIK-DEGSYQCFAFNHFESVQYSVQLVVDSVLPNITSISPGRSINEGDALSIVCQYTALPRPKQTWMYENRPVEES-----SNIVINSNGTFSELRVPKFTMAMSGRYQCLVENRVGLDSKYVNIKIEGKPLITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVT-SSQSMKVLSNGTLLIGSFSAN-EEGEFECH--AQNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKD-----GILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEM 1148
C G+ W++NG+ L+ +V IT G+ I D +K D G+YQCF S Q VQ+V++ P I S + ++ + +S++C P P TW ++ P+ + S ++ + S L + + G Y+C N G+ I + G I +++ + G+ +HC V G P ++W + + + + + + +NGTL + +EGE+ C+ Q TS+ V+V PP I P + G RV C G +TITW KD G L ID I+ +TS++ I ++ H+G YTCIARN A +
Sbjct: 333 LSCSVTGTEDQELSWYRNGEILNPGKNVRIT----GINHENLIMDHMVKSDGGAYQCFVRKDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNIT-AIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLS-TSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDL-PITITWQKDGRPIPGSLGVTIDNID------FTSSLRISNLSLMHNGNYTCIARNEAAAV 678 HSP 3 Score: 82.0333 bits (201), Expect = 8.986e-16 Identity = 71/273 (26.01%), Postives = 112/273 (41.03%), Query Frame = 3
Query: 135 GSMPIIYHWFKNGQKLSSETDVTITSGEKGVGSVLEIQDIDIKDEGSYQCFAFNHFESVQYSVQLVVDSVLPNITSISPGRSINEGDALSIVCQYTALPRPKQTWMYEN-------RPVEESSNIVINSNGTFSELRVPKFTMAMSGRYQCLVENRVGLD---SKYVNIKIEGKPLITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVTSSQSMKVLSN--------GTLLIGSFSANEEGEFECHAQNSFGRTSKKVYVKSIEPP 899
G +PI W K+G+ + VTI + + S L I ++ + G+Y C A N +V++ QL+V V P + G A+ + C P P W + +P+ + I + SNG+ L + SG Y C V N VG D S Y+ +KI +IT + + G+ + C G +VRW + + + ++S TL I + G F CHA NS+G + + EPP
Sbjct: 622 GDLPITITWQKDGRPIPGSLGVTIDNID--FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIV-RVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGS---LLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPA--MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 886 The following BLAST results are available for this feature:
BLAST of TCONS_00020140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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