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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020158 ID=TCONS_00020158|Name=TCONS_00020158|organism=Clytia hemisphaerica|type=transcript|length=3878bpRun BLAST on NCBI transcript from alignment at sc0000350:149053..157524+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020158 ID=TCONS_00020158|Name=TCONS_00020158|organism=Clytia hemisphaerica|type=transcript|length=8472bp|location=Sequence derived from alignment at sc0000350:149053..157524+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020158 vs. Swiss-Prot (Human)
Match: FBX11 (F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3) HSP 1 Score: 840.877 bits (2171), Expect = 0.000e+0 Identity = 426/767 (55.54%), Postives = 550/767 (71.71%), Query Frame = 1
Query: 349 YLQKLIPDEVLLKICHYVRPKDLCRLACTCKRIYEICEDNKLWERLHRQIYTLDYPLQKTK-NNLYEVVSLISGPGRPETY-----WKKFFPLLYRAHHVS---KDQQLSRQLQHLGRK---CYGSIEEALNNKAP-----IILVHSGTY-EESVEVNHQVTIIGTGIPGTPSETCITNTSKTIFRFGPQAAKSIIAFLSISILRDEASS---SVGYCLDVGQDSSPIIQNCHITSKSTCVAAVHVHGPGSSPKVVRCKISECNNVGLYIHDGAQGVFEDNEISSNRLAGVWVKTQANPIMKRNEICHGKDAGFFIFDGGMGYYEENNVHSNRIAGIEVRSEANPTVVRCHIHHGFTGGIYVHDSGRGEFLCNQIHSNTFAGVWVTSGSNPTIKDNNIYHGEQGGIYVFGEGRGLIENNDIYGNALAGIQIRSNSNPIVRKNRXXXXXXXXXXXXECGMGLIEDNEIYGNTLAGIWITTGSAPILRLNRIHSGKQVGVYFYDKGCGTLENNEIYNHKYSGIQIRSGSSPVIRKNKIWGGKNGGVLIYNGGLGILEDNEIFDNAMAGVWIKTESNPILRRNKIHDGHEGGICIFNNGKGLLEDNDIFRNALTGVLISSQSFPVLRRNRIFQGGAAGIEITNGAGGVLERNEIFNNKFDGICLATGVEPKLIDNNCHDNKEELSEAIEEGKCLYQVSGNACYPMHDFYKCVTCSSTENLAICVNCIKKCHQGHEVQFVRHDRFFCDCGAGTTPNCCQLVPSSQSPTRDV 2586
YLQ+ +PDEV+LKI Y+ +DLCR AC CKR E+ D LW+RL+ +++ P+ + Y++ PE Y WK+ F LY+ HV + S ++ GR+ Y +IE+AL +I VHSG Y +E + + +T+IG + I NT + F F + + + +++I D+ S+ + +CL++ + SPII +C I S T +AV V G G+ P + C IS+C NVGLYI D AQG++EDNEIS+N LAG+WVK NPI++RN I HG+D G F FD GMGY+E N+H NRIAG EV++ ANPTVVRC IHHG TGGIYVH+ GRG+F+ N+I++N FAGVW+TS S+PTI+ N+I++G QGG+Y+FG+GRGLIE NDIYGNALAGIQIR+NS PIVR N+IH G+HGGIY+HE G G+IE+NE+Y NTLAG+W+TTGS P+LR NRIHSGKQVGVYFYD G G LE+N+IYNH YSG+QIR+GS+P IR+NKIWGG+NGG+L+YN GLG +EDNEIFDNAMAGVWIKT+SNP LRRNKIHDG +GGICIFN G+GLLE+NDIFRNA GVLIS+ S P+LR+NRIF G AAGIEITN A LE N+IFNN+F G+ LA+GV + DN +N++ + +A+ G+CLY++S YPMHDFY+C TC++T+ AICVNCIKKCHQGH+V+F+RHDRFFCDCGAGT N C L + PT D
Sbjct: 154 YLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQI--------NPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTL---AGEPTHDT 909 The following BLAST results are available for this feature:
BLAST of TCONS_00020158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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