TCONS_00020168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020168
Unique NameTCONS_00020168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020168 ID=TCONS_00020168|Name=TCONS_00020168|organism=Clytia hemisphaerica|type=transcript|length=230bp
CAGACATTTAGAATAGGAAATAGATATGGACAAGGAATCTTGGTGCACTG
TCGAAAGAATTGCAAGTCAAGATTGGACTCGGGCTGAACGAAAACATTGC
AAGAATGCATTTGATAATGAAACTCAATTCAAGATGTAGACGAGTCACAC
CTAAAATATCTTATTATAGaacttgaaaaattatttattttgataattat
cCTCTGATTagattttgtacattttttaaa
Run BLAST on NCBI

transcript from alignment at sc0000350:254244..254872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020168 ID=TCONS_00020168|Name=TCONS_00020168|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at sc0000350:254244..254872+ (Clytia hemisphaerica)
CAGACATTTAGAATAGGAAATAGATATGGACAAGGAATCTTGGTGCACTG
TCGAAAGAATTGCAAGTCAAGATTGGACTCGGGCTGAACGAAAACATTGC
AAGAATGCATTTGATAGTAAGGTTTTCAAATCAGACTTGGCAGAAAATAA
AACTGATCGCTTAACAGCTTTTAAACCAGACGATACAGCTCACAGAGAAA
AAAGGCATTTTCCATCAAAATGTAAGATTTTAAATGTTGAAAGAAGGCCT
AATATaagagtttaaaaaattttgagtgATGGCGTACAAAACATACAGAA
AATTTTTGCGATTTGACAAGGCTCCTTCCTGCATGCTTTTTTATGTAGGC
TGGAGAAAGGTgataaaagctttaaaatttgagttTGCTGCTTGCTGtgt
ttttgggatttttttccttttaacgTTGTGCATGACTATATGCTATTAAA
TGGGTACATTGCCAAGCAGTGCCAAGTTATGAGATTCAACAATGTTTTTT
ACATACTTCTTATAGATGAAACTCAATTCAAGATGTAGACGAGTCACACC
TAAAATATCTTATTATAGaacttgaaaaattatttattttgataattatc
CTCTGATTagattttgtacattttttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011330XLOC_011330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020168-exon-sc0000350-1491911889:254244..254359TCONS_00020168-exon-sc0000350-1491911889:254244..254359Clytia hemisphaericaexon
TCONS_00020168-exon-sc0000350-1510915933:254244..254359TCONS_00020168-exon-sc0000350-1510915933:254244..254359Clytia hemisphaericaexon
TCONS_00020168-exon-sc0000350-1575043694:254244..254359TCONS_00020168-exon-sc0000350-1575043694:254244..254359Clytia hemisphaericaexon
TCONS_00020168-exon-sc0000350-1491911889:254759..254872TCONS_00020168-exon-sc0000350-1491911889:254759..254872Clytia hemisphaericaexon
TCONS_00020168-exon-sc0000350-1510915933:254759..254872TCONS_00020168-exon-sc0000350-1510915933:254759..254872Clytia hemisphaericaexon
TCONS_00020168-exon-sc0000350-1575043694:254759..254872TCONS_00020168-exon-sc0000350-1575043694:254759..254872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:254244..254872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.41132e-07	6.34903	0	0.831336	402.875	240.803	279.028	238.397	276.749	339.367	245.857	142.329	0	0	25.1362	21.8335	5.87815	0.215826	0	0	5.80712	13.7528	22.4068	25.2203	131.386	167.128	72.7784	73.463	49.7043	64.4002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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