TCONS_00020202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020202
Unique NameTCONS_00020202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020202 ID=TCONS_00020202|Name=TCONS_00020202|organism=Clytia hemisphaerica|type=transcript|length=2793bp
AAAAGAGGGAGAGCGTAGGCTTTTCTTGAGATTACAGTAGATGTATGTGA
TATTTTGCAAATGGATTTTATTTGACCAAGTTGTTGAAAATAATTGACAA
GGACGATATTTAGAACTTTATGTCTTGGGAATTTGAAATCATGCGTGAAC
TAAATCACCATTACTTACCATCAAGGTCATACGAACACGAAGAATTTGGG
AGCTCACCTGAAGACGACTTTCTTCTCCCAACACGCTCCAAATCGTTCCG
CCACATCCGCAACCCTTCACCACCACCTGGACATCATATTCAAGATAACA
CGATGATCAATCATCGAATATCGACGCAATCAGACACGACGCACACGCCT
GAAGGTGGAATCTTTATCCCTGAACCTGAAAACGACAACGTCCATGACGG
CTTCATCCCGATCGATCCTCCCGAATACCCGACCGATGACGACCCACGAA
TTCATAGTTTCGATAGCGGTCAATTTGGATCATCTTCACCCGTATCCAAC
GGCGCTTTCTCAACTGGAAGtgagATATACAGACGACCACGTCCAAGTGA
TTACGTCATCAGAAAACGGCCCTCAAGCGATGTCTTTCCCGATAAATCCG
ATTATACGGAAGATGATGAGCCGTACATGTTCAGGAACAGTCGTCCCTAC
TCTGATTGGACTTTGAACCTTCGAGATACTGATTACCACTTCTTCCCCTG
GCAACTTGAGAATTTTACTGGGAACGGCTCCATGTCGCCCAGTATTTCGA
GTAGTGTCATCAGCCAAGGGTCTTCAGgacttgttCCAGATTACGACGAC
AATGACTTAACCAAAGGTTTCAGCAATCTTTCTGTCAAGGACCTCAAAGA
TGTTCACTTTGCAAataaaaaatggaccaaaattcgACAGATTGGATCTG
GCGCATTCGGAACGGTGTACTTGTGTCGTGACTTAACAACCGGTAAAGAG
TTAGCCATGAAATGCGTGGAGACTGGGTCCGTCAATCCAGCCGCCATGCA
AGAAGTTGAGATCCTTCACCGAGAAATCAATCTTTATAAAACGTTGAAAC
ACCAAAGGATTGTTTGTTACTATGGCAGCATACAAGACACTAAAAGTTTG
TCAATCTTCATGGAATACATGGAAGGAGGTTCACTACACGAGCGAATTTC
TCGTTCTGGAGCTATGAGCGAAGATGATGTGCGAAAATATTCTCGTCAAA
TGTTGGAAGGACTTGATTATCTCCACAATAACCATATCATACATCGCGAC
GTTAAAGGTGCCAACATCTTATTGGATAAGAACGATAACTGTAAACTTGC
AGACTTTGGTTCATCGAGGCAAATTAAGACAATCCGATCAAAAACGGGGT
GCAAATCGGTTCACGGGACGCCCTATTGGATGAGTCCAGAAGTGATCAAT
GGGCAAGGTTATCGATGCAAAGCAGATATTTGGTCATTGGGATGTACAGT
GGTGGAGATGTTGACCACCAAACCACCCTGGTTCCACCTGGAACCTGTTG
CCGCCTTGTTCAAGATCGCCACACAACCCACCAAACCACAACTGCAAGGG
TCCTCCCTCATGTGCATCAAGTTCGTCGAGCTCTGTCTTGAAAAGGACAG
CAACGTTCGCCCATCTGCTCTTGAGCTATTACGTCATCAGTTCTTAGTAG
ACCGATAGCCTTGGTATGAAGCGTGTAGCCTGACTTGAATGTGCGAGTTG
TGGATTGGATATAGTGTCCTCAAAACAAGGAGGAGAGAAGAGGATGTCAC
GTGACTCTCTCGTAATTCCAAAAAGATTCTTTCAAGGAGATACGGAAATG
AATATCGTGAAAGTTAAACCTTTTCAAATTAAAATCGAATGGAAATTCTC
ATTGAGTCTCCGAGTGTTATCAAACACCAAGAGATATGGTTTTTCACCGA
GAACGCGATCCTCCAGGGATTTTGGCTTCCAATCTCTCCTGTTGCCAATG
GTCAAATTAAACATTGAGAAAACACGAATAAAGTCGATCGATTCAGAGAA
AAGCTCCTTTTGAGGGGCAGTTTTAGATTCACCATTGGATGACGCTCGAT
AGTTCTAAAAAGCGACAGACCTATGCAAAAATTGCGTTCGGACTTTTTGA
CGAAGCATTGTGAACGTATTTAAGGAAACAGTTTTTCAAAACGAAAATTC
CATCCGTTACCCGAACGAACGAACTTAAAGAGTATAATAAACGAAAAATA
CATTAAATGATTTGGACTGAATGAAAAGATTTGATAAACAGACAGAAGAA
GAAGGAACTTTAAGACTTGAGTTTTTATATTCCCGATGAGATAATTATTA
GACGATTTTTATGTGCATCGATAAACTACCGTTTGCACCGATCTGAACTT
TTGGTggcagaaaaattatttcatataGTATAtgacttgttttgatttta
tctgcatataaacaaatatattgTTAGAAAGCTTTTCTCGATAGATTAAA
AAGTTATGGTCAAAAAGTGTCTTTACCACAACCCTACATATAGATTTGAG
TACTATTTTTGCCAGAACTTTTTGGATACTTAGGTTTCACTCACAGGGAA
CGCTATCATACAGATGCAGGTCCGCAAATTCTTATCTGGTGCTTTCGGTA
GTCCGCATTTTATGTCAACATTTTTATGTAAATAGCCAATCCCATgtgat
atattttttcaattttcctttagttttttaaagatttgttgtttttttgt
ctgttttcttTACCGTCAATATGACATGATTAGTAAGAAATTTGATGACT
AGATAAATATATGCTCAGAATGAGCGCTAATTCGAATTAAATT
Run BLAST on NCBI

transcript from alignment at sc0000350:29785..40858-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020202 ID=TCONS_00020202|Name=TCONS_00020202|organism=Clytia hemisphaerica|type=transcript|length=11074bp|location=Sequence derived from alignment at sc0000350:29785..40858- (Clytia hemisphaerica)
AAAAGAGGGAGAGCGTAGGCTTTTCTTGAGATTACAGTAGATGTATGTGA
TATTTTGCAAATGGATTTTATTTGACCAAGTTGTTGAAAATAATTGACAA
GGACGATATTTAGAACTTTATGTCTTGGGAATTTGAAATCATGCGTGAAC
TAAATCACCATTACTTACCGTGAGTGTTTGAAATATTTTGACTTTTTCAA
CAACTTTCTCTTTTTTACAAGTTAGTTTTTTATTATCAGCGCCAATTCAT
TCATTTATTCTCTAGGTACATACAGCCAACAGTCAGTGGAATAGACCTTT
TCATAAATTACGTCACGAACAACGCTTACCTCGTTTTCAAAATATTGCCA
TGGTTATTGATTCCCAGAGGAGATCATAAGAAGTTTACTCTATTTAAACA
AGAGCAACACTTGAAGACTCGAGGGATTTAATCACCTTGGTAATATCTTC
AAAACGAGGCAGTCGTTGAACTGAAAATGATTTTTGAAAAGACTTATTGT
AGTGGCATTTTCGACTGACCCTTAATGAGGTCCAAACTAACAACGATTTT
TGGCAAGTAAACTTGTCAAATCTCAGATTTTGATCACAATAAAGTTTTTT
AAGGAGCTAGAATATGAAACTGCTTTGTCAATGGTTGGTGAATATTAAAC
TTGGTTTGAATCCGTGGTTGTGTATCAATTAGAGCTTTTTGTTGATTTCT
CTGTCTGTCTGCCGAATGTAGTTTGATTTGGTTTCTTTTTTTGTGGCTAT
CATCCAGAACTTCGTTCGTTTTTTCACTATGTGCCTTTAAAATTGTTTTA
ATAAAGTAACTTTGTATTGCTGGAATAATCCTATTATTACCTATAAATTA
AAAAAAAAATCAAGGGAAAAAGGGAATTTAAAGGGAAATCAAGGATTGAT
TTTGCCACAAATAATGCAACATTTCAATGTTTGACAAATTTACATCTATT
TTCATGGCTTAAATATTCAAGTTATTCTGCTCTATGTGAAAAACATGCTT
ACAAAAAACTTGAGATGGACTGCCACTGACTTCCTTTCGACAGTAATTTT
CTGTACATCCCGTTTCTCTAATTATTATTTTTATAAAGAAACTTTCTATA
GTAATTACTATATATCTCAGCATTCGATGAGATACGTTGTGTGGAGATAT
GTTTTCTTCTCAATCACTCTCGTGTTTTGATAATATATAAACGATCGAGA
ATATTTTAAGTTTTTCCTTCATACCTTTACTTTACAATTGTGGATGGAGT
GAGGTTTTATGATTAAGTTCAGGTTAGATTACAAAGGTATCTGATGAATG
ATGCATTCTTGTAACAGATTTTTTATGATATGTAATGCGTGGCAGTTTCT
CTAATTCTTGGTTAATGATAGTACTTTCGTATGTTGATAAAATCAAGGTT
TTGATTTTATAGTCTGTTCACGGCCAAAAACGTGATAATTTTTTAATATA
CTCAGAAAGAGTTTAAAGCATCATAATACTGTAATAGTTTATCAGATGGT
TTAATCATACGAGAGTAGAAAAAATACAATGAAAAGTCATTTATCTTTTC
TTGTTTAGCGATATTTGTTACTTTTGAATTCCTTGTCCATCGTAGTAAAA
ACTATGATGAGTAAATGACTTATTTTTACACTGAAGAATATTTTGGTGTC
ACTTTTCTGTCATTTCAATGTTTCCAAAATATGGAAAGTGACATAATGAT
CGGAAATTCAAAATAATTCTCTTTCTATCTATGAACAGCTTTCCTCAGCG
TTTTTTGTTGGCATATAATTTTTTGATTGGTATAATTTTGTTCAGTCCAA
CTAATTAATTTTGACGAGTTTGGAAGATGTAGGAAGCTTATTAAGTTCTG
TCTTCATTTGGCAAACAATGTTGTATTATTTTTAACTTAAAGCCTTTTTT
GTGTCCTCGTATTCTTGTCGGTGATTGGAAGCGTTATAAACCATGAAGTT
GATGATAAAATGATAAAAACTTTTCTGTACTGTTTGTTCTTCTCAGTTTT
CGGTTCAAACTCTTGATAGCTCAAATACTCACATAGTTTTAGATTCAACC
ATTTATATTGAAGGGAGACTAGTTGAGATTAGTTATGTCGTGTTGTTGAT
AAGTCGTCGAGTCATGTCGAGTTGATGAGCCTCTTGAAAGTTGAGCAAAA
CGAGAAAATCTTTTGAAGAAAATAAGAATATTGAGTTTCGAGTCGCGGAA
GGTTTTATTTATCGTTTCTCAATGTTCTGACCCTCCTCTACCTTTAGATC
AAGGTCATACGAACACGAAGAATTTGGGAGCTCACCTGAAGACGACTTTC
TTCTCCCAACACGCTCCAAATCGTTCCGCCACATCCGCAACCCTTCACCA
CCACCTGGACATCATATTCAAGATAACACGATGATCAATCATCGAATATC
GGTATGTAACTTCTCCCACCATCATGGTCAGCCCCTCTTACAGACCCTTA
AAGTCAAAACTCTTCACAAATCGCATTTATAGACTCAAGGATTAGGAATT
TTTGGTTGACTTGTAGGAATACGTCTCTTGTGAAACGATCTCTTAAGAAA
AATCGAACGTTCTGCCCTTTCATTTGGGTGATAATGATTCAATCTACTAA
AGCAAAGCAAAATCTCTCCCCCTCTATTGTGGTTGAATAATAACAAACAG
TTTCTTTGTTTTTGTTGACAGACGCAATCAGACACGACGCACACGCCTGA
AGGTGGAATCTTTATCCCTGAACCTGAAGTAAGTGATCTTAATGCAATTT
CTATATCTTGAAAATTTATTTCCAAGAGTCTATCCGACAATTTGTATTGT
CTTGTATTCAGCATTTCGGAAAAGTTTTTACTACAACTACGTTTTCATTA
ATATCCAGCTCGATCTATTTTTTGACCTCAACAAATTACTTCAAAATAGC
TAGAAATATTAAGTCATGTATCTCGAGCTTTTCAAAGTCATTGGCCCGCT
GTTTTATATCCATACTACTATCTCTTCACCCGACAGAACGACAACGTCCA
TGACGGCTTCATCCCGATCGATCCTCCCGAATACCCGACCGATGACGACC
CACGAATTCATAGTTTCGATAGCGGTCAATTTGGATCATCTTCACCCGTA
TCCAACGGCGCTTTCTCAACTGGAAGGTAAGAGAGAAGGATTGGTTGCTA
GGGTAACAAATGAAAGTGTTTAATATATTGTCAGCTATGTCTTACTATAA
AATGCTTGTTGTGGACACCTAGACTTGTCATGAAACATCTTTTATAAGCA
TAGCAGGCCTTACCAATGATACATTGAAATCCTGACCTTTGGTTGTAATT
TGTAAATTATATTTTTCTTTGTGAAACTCGAATTCTATAAATCCATATTT
TCTTTTTCAGTGAGATATACAGACGACCACGTCCAAGTGATTACGTCATC
AGAAAACGGCCCTCAAGCGATGTCTTTCCCGATAAATCCGATTATACGGA
AGATGGTATGTTTCTTATTTTACTAAAATTCTAGGTTACACACATCCCTA
TAATATGCTTTTATATAGGGAATGCGTATCGTGTATAAAATTCCCGTCCC
AGAATTACCTCTGTCTTTATGATTTTGAGTTTTAGAAACTTGATTAACTT
GATTGGTAAGTTTTATAGTTTATAGTAATTATAAAATTTGAATTAAAAAT
TTGAATGGCTAGAGTTAATACAATCGCTGGATTTCTGAAAATCTTTAAGG
AAATTGAAACAGGTTACCCCAAATTTGAGGTAATTCTGGGACGGCAATTT
AGACACGATTAGCATTACTATATTAAAACATGCGTGCAGCCTACTAAAAC
TCGTGTTTTACACTTTATGGTAATTGGACATTATGGTTCTCCCAGGCCAG
ACTATAAAAACCTTATATTTACTCCCAAAGAGGTTTAGGCTCCACTGGTC
TCGCTATCGTTCTATTTTTAACTCTCATAAAAAACAACTTGTTGGTTCTA
TCCATTCATATCCATCGATTCGCCATTCATGAAACATTCTCCTTCCTTTG
CATTTTCAGATGAGCCGTACATGTTCAGGAACAGTCGTCCCTACTCTGAT
TGGACTTTGAACCTTCGAGATACTGATTACCACTTCTTCCCCTGGCAACT
TGAGAATTTTACTGGGAACGGCTCCATGTCGCCCAGTATTTCGAGTAGTG
TCATCAGCCAAGGGTCTTCAGGTACGCGTGGCTAATCGATTTCTTTACCT
TGCATGTTTCAGAACATTCTCTAACTCCTATTTGAACGACATGCTGGAAG
TTCGAAAATTTGATTATTTTTTATATTAGACATTGTTATTTTTTCCTTGC
TAAATTTTACCATGCATAGTAAATTTTCCCTGAGAGCTTTTTAAGTTATC
ATATGCGACTCCAATGATCGTCATCCAATTGACTTCCACATCTCTGACAC
AGGACTTGTTCCAGATTACGACGACAATGACTTAACCAAAGGTTTCAGCA
ATCTTTCTGTCAAGGACCTCAAAGATGTTCACTTTGCAAATAAAAAATGG
ACCAAAATTCGACAGATTGGATCTGGCGCATTCGGAACGGTATAGTTTGT
CCCTTCTTCGAATTTGCAAATTAATTTTTAAATTTCTTAAATGTTATTGC
TTTAACCTACTTCACTTCCAGCTGTTTATAATGTTTACCATCAAAAACTA
TCGCCAATTGCCCGCTTTTAAATCTTATCACTTATCTAAAAAAATATGAT
TATGTGATATAATAAAAAATCATCAAATTGCCGAATACCTATCACAGAAA
ACCGAGCCGGCTGGCAGTGGCAAATTTTTAAACATGTAAACCATAGACAT
TTGTTTTGCACCCATTTTAGCTTCTGTAATTCCAATATCATTCATTCATA
CAGGTGTACTTGTGTCGTGACTTAACAACCGGTAAAGAGTTAGCCATGAA
ATGCGTGGAGACTGGGTCCGTCAATCCAGCCGCCATGCAAGAAGTTGAGA
TCCTTCACCGAGAAATCAATCTTTATAAAACGTTGAAACACCAAAGGATT
GTTTGTTACTATGGCAGCATACAAGACACTAAAAGTTTGTCAATCTTCAT
GGAATACATGGAAGGAGTAAGTTGTCTTCTTTGATGCATCTTTGTAAATA
TGATGGTCAACGTCTTTTTGGACCTACCTGGAGGTTCTATAAATTAACCT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGATTTTTTTGCTCAAAGTGGTGTATTAACAATGCCCGA
AACTAACCGAGTCCGATTTTTTAGAAAAAAATTTTTCCGGCGGAAAATGC
CGGAAATATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGTCGGACT
TTTTCCTTATTTTAGGTTGTTTTTTGGACCTACCCCGGTGGGGTGGAGCA
TTGAGTTTCAAGCCCGAAGGGCTAGAGGTCAATCTCTAACCTTTCTCAGG
CAAGAAAAATTGAAGCCTTAAAATATGCGCCGTATTTTTGATGACGGCTT
GAATCTAGCAATTCCTTTGTCTTCGAGTGATATATTTTTCGAAATTAAGC
GGTAAATTTTAGTTTCAATCTGTCATTTGTGTAAAAACCAGGCGGGTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCTGGCGGGTCGCTCAAGG
CCGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGATT
GACCTCTAGCCTTCGGCTTGAAACTCAATGGGGTGGAGGTCCTATAAATT
AACCCGTGTTCGTTAGTTAGTTCGTTCGTTCGTTCGTTAGTTACCAACTT
TTCTCGAGATTGGCTCATTAAATTTTTCTGATTTTTTGCACAAAGGTGCA
TTACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAAATTT
TTTCCGGCCGGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATTAGTTTTTTGCGATTTTTTGCACATAGATG
CACATTAGTACTGCCGAAAAGGTGTCGGAAACCGTTTGCCGAAAAAAAAT
TTTTTGCGCTCTGTAGAACCGGAAATGTGCCGGAAATCGTCGTTTTTTTC
ACATTTCCGTCACATTTTTTCAACTTATTTAATTGTTCCTTTACAGAAAA
ATGTTCTTTATGATGATGCCCAAAACTTAGCATNTTTTCCGACCGAAAAT
GCCGGAAATATGCCGGAGAAACCGGTTTTTTGACATTTTCTCGATTTTTC
ATCCTTAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCT
CAAAACATGACCGAGTTCGATTTTTTTATAACAATTTTTTTCCGGCCGAA
AATGCCGGAAATATGCCGGAAATCGCCGTTTTTGCAGACTTTTTCCTAAC
ATTTCATTTCTTCCTAAAAACATCATTGATAGCAATTCCCACCATCAAGC
ATGATTCGATTGTCAATATAACTGATTTCTGCAACCGGAACTTTCTATAT
CTTTTTTCCCTTCTCCCCTTCCCTCTCCCCATCAACAATCAATGATGAAA
TTTAACGCGTTATGCCCTTTCGCTAAACATTATATTTTCTAACGGATTGT
TTCCGTTTTTCTCCTTATTGCTATCTAACTTTCATCATTAGGTAGATCCA
CCCAGCATCTAGCTTGTTTTGGTTGTACTAGAATGTACTTTTATTGAGCC
AATCTTATATTTTTATTCAAATTTTCCAAAAAAAACTTGTGCTATCGATG
AATACAAAAGCTGATTAGGAGAGTTCATCTAACAATTCCAAACCATCTAA
AGAACGACAAAAACTTAAAAAAGAACGACAAATTTTGCATGCATTCTAGT
GCAATATTTGATGTTCGACCAAAATTTGTCTGGTATCCTTTATAATCAAC
CTTTGTTACGTATGATTCCTACTAGCGACACAACATCACATCTTAACCTT
TGTCATTTCTCTTCTTTTAGGGTTCACTACACGAGCGAATTTCTCGTTCT
GGAGCTATGAGCGAAGATGATGTGCGAAAATATTCTCGTCAAATGTTGGA
AGGACTTGATTATCTCCACAATAACCATATCATACATCGCGACGTTAAAG
GTATTTTAATCTCCGTAACCTTATTATACGATACCTGTAGAACTAATTTT
GTCAGTCACTCTAAGTTTTGCATGCCTAAGTACATCGAAGCCATTGTCTA
GCCTTTCGGTCGAATCTGTTAGCAAGTTTGAGAAACAACTCCACCACTAG
TTGCATTCGGAATTCTTTCACTTATTTTCACCTTCATCATAGGTGCCAAC
ATCTTATTGGATAAGAACGATAACTGTAAACTTGCAGACTTTGGTTCATC
GAGGCAAATTAAGGTACGTTTATCTCAATTTACACTTGTCAACTTTCAAT
TTTAATTATCCTTTTAGCGGCGACATGCTCCAAGACGGCCTTTAGAGTTG
CCTTATTAATACTCAGTCGGAATATTCATTTATTTAAGGGCTCTGACCAT
NCTGTTACGTATGCTTCCTACTAGCGACACAACATCACATCTTAACCTTT
GTCATTTCTCTTCTTTTAGGGTTCACTACACGAGCGAATTTCTCGTTCTG
GAGCTATGAGCGAAGATGATGTGCGAAAATATTCTCGTCAAATGTTGGAA
GGACTTGATTATCTCCACAATAACCATATCATACATCGCGACGTTAAAGG
TATTTTAATCTCCGTAACCTTATTATACGATACCTGTAGAACTAATTTTG
TCAGTCACTCTAAGTTTTGCATGCCTAAGTACATCGAAGCCATTGTCTAG
CCTTTCGGTCGAATCTGTTAGCAAGTTTGAGAAACAACTCCACCACTAGT
TGCATTCGGAATTCTTTCACTTATTTTCACCTTCATCATAGGTGCCAACA
TCTTATTGGATAAGAACGATAACTGTAAACTTGCAGACTTTGGTTCATCG
AGGCAAATTAAGGTACGTTTATCTCAATTTACACTTGTCAACTTTCAATT
TTAATTATCCTTTTAGCGGCGACATGCTCCAAGACGGCCTTTAGAGTTGC
CTTATTAATACTCAGTCGGAATATTCATTTATTTAAGGGCTCTGACCATA
GTGAATTTTGATATTTGTCATGTACAAAATATAAATTTCTGCCTGATTTA
GCTGGCAAAACTTTGACATGTTATACATTTTCTGTTAGGCCAACTATCTT
TGAGTCTGAAAATTTAAGAATCGCAAAGAAAAAATTTGATGAAGAAGAAA
ATGAAGACTTTTGCGACGAAGAGTATTTCAACTTTGAAGACCTTATTTTG
ATCGAAGAAGAAATATTTTGAAAAAACTTTTGTGGTAGATGGTGTATCTT
TTACCGAACTAGAAATCTATTTTCGGAAAATTTTTCTAAAAGCTTAATCT
TGAAAAAAGTGCTTTTTGACCAATTTTTCATCCCAAATGTTCATAGAAAA
ACAGCTATTACTCTTGATGCATCAACTTAGAAAATTGTTCCGAAAAATTT
AAAACAGCTCAATTATTTGCGGACAGTTTGAAAAAATATAAATGTTTGAA
ATAATTTTGTAAAGACAATTCTTTGTTAAAAGTGTAAAGGAACCTCAGAC
ATAACTGTTATGCTCAAATACCAAAATCAATTTTTTGACTATGGTCAGAG
TCCTTAAACTTCCATTTTCCATTCTTATAGACAATCCGATCAAAAACGGG
GTGCAAATCGGTTCACGGGACGCCCTATTGGATGAGTCCAGAAGTGATCA
ATGGGCAAGGTTATCGATGCAAAGCAGATATTTGGTATGTGTTCACCGTT
TAAAGTTCTCAGTTTTCGTAATTGTTTTTGGCAGATCGGATCTATCGGTT
GATGGGTATATTAGAACCCAATAGAAACAATTCGGACTAGTTTGATTAAT
TTTAGAACCCATTTAAAGTCTTTAGACCTGAGTAACATGTTTTATGACGA
AAGAGTATTAAAAATACACAGAGAAACACCCACGCTCTATTCAATTAATT
AATTGCTTCAAAATGCGTTGACTCTCACTTGAGATATTGGTACAAGTTGC
AGAAGATATAATTTTGATTGTGCTTACTTCAGGTCATTGGGATGTACAGT
GGTGGAGATGTTGACCACCAAACCACCCTGGTTCCACCTGGAACCTGTTG
CCGCCTTGTTCAAGATCGCCACACAACCCACCAAACCACAACTGCAAGGG
TCCTCCCTCATGTGCATCAAGTTCGTCGAGCTCTGTCTTGAAAAGTAAGT
AACCTTCTTATACACAGAGGAATGCTAAGACTTTTACCCAATGAGTTATT
AAAAAATGCTATAAAAGTCATTATCTACAAAACAGTATAAAGGTGTTATA
AGGAACACGAATCTTTAGTGGATGCCAGCTGCCTATAAAGTCCTTTAAAT
TGATCAAGGTTACCTTTTGGCTCATATCCTCTGTGTTTTGATTGTTGTTC
TTCTTCGCCTTTGATTGATAAAACAGTCAATTGAAACCTAATGGTTTTCA
AACACAAATTTTGATTGAAGTGGATTAGAATTAATTACCAATCAGTTAGA
TCTTCTTAATTGTTTCGCTTCGTTTTCTGATTAATTCATTTAATTATCGC
CATCCACTTTCTTTTCATTGTTCAGGGACAGCAACGTTCGCCCATCTGCT
CTTGAGCTATTACGTCATCAGTTCTTAGTAGACCGATAGCCTTGGTATGA
AGCGTGTAGCCTGACTTGAATGTGCGAGTTGTGGATTGGATATAGTGTCC
TCAAAACAAGGAGGAGAGAAGAGGATGTCACGTGACTCTCTCGTAATTCC
AAAAAGATTCTTTCAAGGAGATACGGAAATGAATATCGTGAAAGTTAAAC
CTTTTCAAATTAAAATCGAATGGAAATTCTCATTGAGTCTCCGAGTGTTA
TCAAACACCAAGAGATATGGTTTTTCACCGAGAACGCGATCCTCCAGGGA
TTTTGGCTTCCAATCTCTCCTGTTGCCAATGGTCAAATTAAACATTGAGA
AAACACGAATAAAGTCGATCGATTCAGAGAAAAGCTCCTTTTGAGGGGCA
GTTTTAGATTCACCATTGGATGACGCTCGATAGTTCTAAAAAGCGACAGA
CCTATGCAAAAATTGCGTTCGGACTTTTTGACGAAGCATTGTGAACGTAT
TTAAGGAAACAGTTTTTCAAAACGAAAATTCCATCCGTTACCCGAACGAA
CGAACTTAAAGAGTATAATAAACGAAAAATACATTAAATGATTTGGACTG
AATGAAAAGATTTGATAAACAGACAGAAGAAGAAGGAACTTTAAGACTTG
AGTTTTTATATTCCCGATGAGATAATTATTAGACGATTTTTATGTGCATC
GATAAACTACCGTTTGCACCGATCTGAACTTTTGGTGGCAGAAAAATTAT
TTCATATAGTATATGACTTGTTTTGATTTTATCTGCATATAAACAAATAT
ATTGTTAGAAAGCTTTTCTCGATAGATTAAAAAGTTATGGTCAAAAAGTG
TCTTTACCACAACCCTACATATAGATTTGAGTACTATTTTTGCCAGAACT
TTTTGGATACTTAGGTTTCACTCACAGGGAACGCTATCATACAGATGCAG
GTCCGCAAATTCTTATCTGGTGCTTTCGGTAGTCCGCATTTTATGTCAAC
ATTTTTATGTAAATAGCCAATCCCATGTGATATATTTTTTCAATTTTCCT
TTAGTTTTTTAAAGATTTGTTGTTTTTTTGTCTGTTTTCTTTACCGTCAA
TATGACATGATTAGTAAGAAATTTGATGACTAGATAAATATATGCTCAGA
ATGAGCGCTAATTCGAATTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011345XLOC_011345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020202-exon-sc0000350-1575043694:40690..40858TCONS_00020202-exon-sc0000350-1575043694:40690..40858Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:38458..38611TCONS_00020202-exon-sc0000350-1575043694:38458..38611Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:38131..38187TCONS_00020202-exon-sc0000350-1575043694:38131..38187Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:37733..37872TCONS_00020202-exon-sc0000350-1575043694:37733..37872Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:37404..37498TCONS_00020202-exon-sc0000350-1575043694:37404..37498Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:36688..36849TCONS_00020202-exon-sc0000350-1575043694:36688..36849Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:36320..36456TCONS_00020202-exon-sc0000350-1575043694:36320..36456Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:35793..36005TCONS_00020202-exon-sc0000350-1575043694:35793..36005Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:33509..33638TCONS_00020202-exon-sc0000350-1575043694:33509..33638Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:32647..32717TCONS_00020202-exon-sc0000350-1575043694:32647..32717Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:31825..31928TCONS_00020202-exon-sc0000350-1575043694:31825..31928Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:31365..31526TCONS_00020202-exon-sc0000350-1575043694:31365..31526Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1575043694:29785..30983TCONS_00020202-exon-sc0000350-1575043694:29785..30983Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:40690..40858TCONS_00020202-exon-sc0000350-1510915933:40690..40858Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:38458..38611TCONS_00020202-exon-sc0000350-1510915933:38458..38611Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:38131..38187TCONS_00020202-exon-sc0000350-1510915933:38131..38187Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:37733..37872TCONS_00020202-exon-sc0000350-1510915933:37733..37872Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:37404..37498TCONS_00020202-exon-sc0000350-1510915933:37404..37498Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:36688..36849TCONS_00020202-exon-sc0000350-1510915933:36688..36849Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:36320..36456TCONS_00020202-exon-sc0000350-1510915933:36320..36456Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:35793..36005TCONS_00020202-exon-sc0000350-1510915933:35793..36005Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:33509..33638TCONS_00020202-exon-sc0000350-1510915933:33509..33638Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:32647..32717TCONS_00020202-exon-sc0000350-1510915933:32647..32717Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:31825..31928TCONS_00020202-exon-sc0000350-1510915933:31825..31928Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:31365..31526TCONS_00020202-exon-sc0000350-1510915933:31365..31526Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1510915933:29785..30983TCONS_00020202-exon-sc0000350-1510915933:29785..30983Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:40690..40858TCONS_00020202-exon-sc0000350-1491911889:40690..40858Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:38458..38611TCONS_00020202-exon-sc0000350-1491911889:38458..38611Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:38131..38187TCONS_00020202-exon-sc0000350-1491911889:38131..38187Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:37733..37872TCONS_00020202-exon-sc0000350-1491911889:37733..37872Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:37404..37498TCONS_00020202-exon-sc0000350-1491911889:37404..37498Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:36688..36849TCONS_00020202-exon-sc0000350-1491911889:36688..36849Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:36320..36456TCONS_00020202-exon-sc0000350-1491911889:36320..36456Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:35793..36005TCONS_00020202-exon-sc0000350-1491911889:35793..36005Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:33509..33638TCONS_00020202-exon-sc0000350-1491911889:33509..33638Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:32647..32717TCONS_00020202-exon-sc0000350-1491911889:32647..32717Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:31825..31928TCONS_00020202-exon-sc0000350-1491911889:31825..31928Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:31365..31526TCONS_00020202-exon-sc0000350-1491911889:31365..31526Clytia hemisphaericaexon
TCONS_00020202-exon-sc0000350-1491911889:29785..30983TCONS_00020202-exon-sc0000350-1491911889:29785..30983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:29785..40858 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.974116	0.459643	0.757225	0.753444	0.634066	0.244583	1.66301	2.73757	1.58704	1.13826	2.35936	0.359072	0.666977	2.49959	2.08862	2.46413	3.26226	6.01872	2.23247	2.15286	5.20993	5.89174	2.34506	2.22066	4.15089	4.37267	2.84549	2.16463	5.64729	5.29155
Blast
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BLAST of TCONS_00020202 vs. Swiss-Prot (Human)
Match: M3K3 (Mitogen-activated protein kinase kinase kinase 3 OS=Homo sapiens GN=MAP3K3 PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 8.983e-85
Identity = 146/266 (54.89%), Postives = 185/266 (69.55%), Query Frame = 3 
Query:  873 WTKIRQIGSGAFGTVYLCRDLTTGKELAMKCVETGSVNPAAMQEVEILHREINLYKTLKHQRIVCYYGSIQD--TKSLSIFMEYMEGGSLHERISRSGAMSEDDVRKYSRQMLEGLDYLHNNHIIHRDVKGANILLDKNDNCKLADFGSSRQIKTI-RSKTGCKSVHGTPYWMSPEVINGQGYRCKADIWSLGCTVVEMLTTKPPWFHLEPVAALFKIATQPTKPQL------QGSSLMCIKFVELCLEKDSNVRPSALELLRHQF 1643
            W + + +G GAFG VYLC D+ TG+ELA K V+    +P   +EV  L  EI L K L+H+RIV YYG ++D   K+L+IFMEYM GGS+ +++   GA++E   RKY+RQ+LEG+ YLH+N I+HRD+KGANIL D   N KL DFG+S++++TI  S TG +SV GTPYWMSPEVI+G+GY  KAD+WSLGCTVVEMLT KPPW   E +AA+FKIATQPT PQL       G   +   FVE      +  RPSA ELL H F
Sbjct:  362 WRRGKLLGQGAFGRVYLCYDVDTGRELASKQVQFDPDSPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGMRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHGRDFLRRIFVE------ARQRPSAEELLTHHF 621
The following BLAST results are available for this feature:
BLAST of TCONS_00020202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M3K38.983e-8554.89Mitogen-activated protein kinase kinase kinase 3 O... [more]
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