TCONS_00020214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020214
Unique NameTCONS_00020214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020214 ID=TCONS_00020214|Name=TCONS_00020214|organism=Clytia hemisphaerica|type=transcript|length=1248bp
TAAACAAGGTATATCAACATTACAGGAAGCTACAGTAGACAAGTAGAGAT
AAGATAATAAACTATACCTGTCAATTTACCTGAAAAGTTGGAGTTAAACA
GCCTTCTgcagtaaaaaaagaaaaaactcaacAACATCAAAAATAATCTG
CGCtcctttgtctaccattttgcATTCGATCGTGAATAATTTTACGGCGC
CGAGCGTTTGTTTTCATAAATTCTCCACCAAAGTGAAgaagttttgaaag
aaatttcagaTAAGAGAGGgcgaaagttttcaaattataaaattgaAAGA
TGGATTCCATGACACAAAGAGAACGAGACATCTTGGAAGAATCATTTGGT
CTTTACGATACTTGTGGCGACGCCAAAATTGAAATCAGTCTTTTGGGAGA
AGCTCTTCGTGGTCTTGGTTTGAATCCAACAGAAAGCGATGTCCAAAAAA
TTGTCAAAGAGTTAGATTCTGCAGGCTCCAGAAGAATCAGCTTCGAAGAA
TTTTTACCGATTTATCAATCACTTGCATCGCGCGGCGGAAACGATcgaaa
caagaaaaataaaacagacTTTTTGGAATGTTTTCGTGTGTTCGATCGCG
AACAAAATGGTACCATTTCGGCTGGTGAATTACATCATgttatgacgtca
ttgggtGAAGCCATGACGCCTGCTCAAATGGACTTATTATGTCAAGGATT
GGAAGATAAAAATGGAATGATTAATATTGAGCAATTCGTTGATCAAGTGA
TGAATGGTTGAGGTGAAAATAAGGGACAAACTGGGGTTTGACATTTTATG
GATGTTTAAAAGACTGGTTATAAGACGAGATTACATCGAAAACGATTTCC
ACTCCTTCTTGTCAATagttttgtagaaaaaaaatagaattctTGTTTTT
GTTAGCATCATATACCTGGAAACAAAGTATTTATTAGGATATTTTAACGG
CACTTATTACatagttatttaaaaaaaatatgtatttagCTCCCTCTGAC
ATGTATTCACTTCACTATTGACGCGTTCAGAGACTGCTTTCTAGATTTCG
AAATTTGGTGGGAACAAATTATTTAGAGGCTCAacccatggaggtataaa
gaaacaggagaagtatgctattgttaccatgctcgccctacgattaaaaa
aattacgagctatgcatgctcataatctcatatatcgtgcatttttaatg
agctcttttgttgataggtgaaatcttattggctaacttaagtgttgg
Run BLAST on NCBI

protein sequence of TCONS_00020214-protein

>TCONS_00020214-protein ID=TCONS_00020214-protein|Name=TCONS_00020214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MDSMTQRERDILEESFGLYDTCGDAKIEISLLGEALRGLGLNPTESDVQK
IVKELDSAGSRRISFEEFLPIYQSLASRGGNDRNKKNKTDFLECFRVFDR
EQNGTISAGELHHVMTSLGEAMTPAQMDLLCQGLEDKNGMINIEQFVDQV
MNG
Run BLAST on NCBI

transcript from alignment at sc0000350:161913..164084-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020214 ID=TCONS_00020214|Name=TCONS_00020214|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at sc0000350:161913..164084- (Clytia hemisphaerica)
TAAACAAGGTATATCAACATTACAGGAAGCTACAGTAGACAAGTAGAGAT
AAGATAATAAACTATACCTGTCAATTTACCTGAAAAGTTGGAGTTAAACA
GCCTTCTGCAGTAAAAAAAGAAAAAACTCAACAACATCAAAAATAATCTG
CGCTCCTTTGTCTACCATTTTGCATTCGATCGTGAATAATTTTACGGCGC
CGAGCGTTTGTTTTCATAAATTCTCCACCAAAGTGAAGAAGTTTTGAAAG
AAATTTCAGATAAGAGAGGGTAAGTAGTTTTGTATTGATTTCTTTGCTTA
GAATCTTAGGGATATGCTTTTTTATTTATTTACGAAAAATGTTCATCCGA
GATCTTTCCTCTTCTATTGAACTTTAAATGCCTTGATTTAAATGAAGAAC
AAAAAATGAAAATGAAAATTTCAAAATGGTGGACGACGAAAGGGCGTTTT
GATTGAAATGTGATTGAAACTTGGATTTTTCACGTTTTTCGCTATATTGT
TTTTAACTGTTCAACATTCTTGTGTGTAACAAAAGGCCAATCAAGACATC
TTGATTGACAATGTAGTAGAGAGTAAAATGATCAAAGTTTATAATAAGCA
ATAATTGGGAATAATTATATTGCATTATAAATTGGAATTGCTTTTCTATT
TCTCTCATAGCTTTAATTTCTACATTTTAATTAACATTTTTTTCGTCATA
TAAGAAATTCTTTTAAAATCAAAAGTTGATGATGTACCTTCAAATCATCT
TATAATAACGATAGACAATACAAGCTTTTTCAAAAGGGGTAGTTTTAATC
AAAGATTTCCTCCTGATCCGATGTATAATCTTTTGAAGCTGTTGAATGTT
CTATTGATTTTTTTTATATTGAATTCTCGCGAGAGACCTTTTAACGTTTT
GAGAGTTGTATGTAAAGCCATTTATTATTCAATGAAGTATTTTTCAACAC
TGAATCGACACAGGTATAGAGAAACGTAATAACTTTACAAAACATCTGCC
TGTGTTCTGTGTTTTGAAGGTTAAATGTGAACAGTTCTTATATTTGAAGA
AAATATCATCATAGAGATTTATGTATGCTTTTCTCTTCTGTTATAAAATT
CGTTTTATATTTGATGATTTTACTTTCTGTTTTGTTATCTTTTGATTGCA
GGAGAAGATTTGATAACTTTCCTTGCTTTTTATTTTAAAATAGGCGAAAG
TTTTCAAATTATAAAATTGAAAGATGGATTCCATGACACAAAGAGAACGA
GACATCTTGGAAGAATCATTTGGTCTTTACGATACTTGTGGCGACGCCAA
AATTGAAATCAGTCTTTTGGGAGAAGCTCTTCGTGGTCTTGGTTTGAATC
CAACAGAAAGCGATGTCCAAAAAATTGTCAAAGAGTTAGATTCTGCAGGC
TCCAGAAGAATCAGCTTCGAAGAATTTTTACCGATTTATCAATCACTTGC
ATCGCGCGGCGGAAACGATCGAAACAAGAAAAATAAAACAGACTTTTTGG
AATGTTTTCGTGTGTTCGATCGCGAACAAAATGGTACCATTTCGGCTGGT
GAATTACATCATGTTATGACGTCATTGGGTGAAGCCATGACGCCTGCTCA
AATGGACTTATTATGTCAAGGATTGGAAGATAAAAATGGAATGATTAATA
TTGAGCAATTCGTTGATCAAGTGATGAATGGTTGAGGTGAAAATAAGGGA
CAAACTGGGGTTTGACATTTTATGGATGTTTAAAAGACTGGTTATAAGAC
GAGATTACATCGAAAACGATTTCCACTCCTTCTTGTCAATAGTTTTGTAG
AAAAAAAATAGAATTCTTGTTTTTGTTAGCATCATATACCTGGAAACAAA
GTATTTATTAGGATATTTTAACGGCACTTATTACATAGTTATTTAAAAAA
AATATGTATTTAGCTCCCTCTGACATGTATTCACTTCACTATTGACGCGT
TCAGAGACTGCTTTCTAGATTTCGAAATTTGGTGGGAACAAATTATTTAG
AGGCTCAACCCATGGAGGTATAAAGAAACAGGAGAAGTATGCTATTGTTA
CCATGCTCGCCCTACGATTAAAAAAATTACGAGCTATGCATGCTCATAAT
CTCATATATCGTGCATTTTTAATGAGCTCTTTTGTTGATAGGTGAAATCT
TATTGGCTAACTTAAGTGTTGG

Coding sequence (CDS) from alignment at sc0000350:161913..164084-

>TCONS_00020214 ID=TCONS_00020214|Name=TCONS_00020214|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000350:161913..164084- (Clytia hemisphaerica)
ATGGATTCCATGACACAAAGAGAACGAGACATCTTGGAAGAATCATTTGG
TCTTTACGATACTTGTGGCGACGCCAAAATTGAAATCAGTCTTTTGGGAG
AAGCTCTTCGTGGTCTTGGTTTGAATCCAACAGAAAGCGATGTCCAAAAA
ATTGTCAAAGAGTTAGATTCTGCAGGCTCCAGAAGAATCAGCTTCGAAGA
ATTTTTACCGATTTATCAATCACTTGCATCGCGCGGCGGAAACGATCGAA
ACAAGAAAAATAAAACAGACTTTTTGGAATGTTTTCGTGTGTTCGATCGC
GAACAAAATGGTACCATTTCGGCTGGTGAATTACATCATGTTATGACGTC
ATTGGGTGAAGCCATGACGCCTGCTCAAATGGACTTATTATGTCAAGGAT
TGGAAGATAAAAATGGAATGATTAATATTGAGCAATTCGTTGATCAAGTG
ATGAATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011348XLOC_011348Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020214-proteinTCONS_00020214-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020214-exon-sc0000350-1575043694:163816..164084TCONS_00020214-exon-sc0000350-1575043694:163816..164084Clytia hemisphaericaexon
TCONS_00020214-exon-sc0000350-1575043694:161913..162891TCONS_00020214-exon-sc0000350-1575043694:161913..162891Clytia hemisphaericaexon
TCONS_00020214-exon-sc0000350-1510915933:163816..164084TCONS_00020214-exon-sc0000350-1510915933:163816..164084Clytia hemisphaericaexon
TCONS_00020214-exon-sc0000350-1510915933:161913..162891TCONS_00020214-exon-sc0000350-1510915933:161913..162891Clytia hemisphaericaexon
TCONS_00020214-exon-sc0000350-1491911889:163816..164084TCONS_00020214-exon-sc0000350-1491911889:163816..164084Clytia hemisphaericaexon
TCONS_00020214-exon-sc0000350-1491911889:161913..162891TCONS_00020214-exon-sc0000350-1491911889:161913..162891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:161913..164084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.6208	27.9067	17.5342	19.8862	6.92492	4.94853	7.40303	10.9549	4.32752	4.19484	5.75304	4.02121	2.78539	2.14376	2.00079	2.43084	7.18089	6.85239	4.07104	4.79089	11.2904	10.2021	11.6508	11.0502	38.0909	34.8851	6.86383	2.8465	3.50369	4.90365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00020214 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.246e-32
Identity = 59/150 (39.33%), Postives = 98/150 (65.33%), Query Frame = 3 
Query:  312 TQRERDILEESFGLYDTCGDAKIEISLLGEALRGLGLNPTESDVQKIV--KELDSAGSRRISFEEFLPIYQSLASRGGNDRNKKNKTDFLECFRVFDREQNGTISAGELHHVMTSLGEAMTPAQMDLLCQGLEDKNGMINIEQFVDQVMN 755
            ++ ++D  +E+F L+D  GD+KI +S +G+ LR LG NPT ++V+K++     +   +++I FE+FLP+ Q+++    N++++    DF+E  RVFD+E NGT+   EL HV+ +LGE M   +++ L  G ED NG IN E FV  +M+
Sbjct:   48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAIS----NNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00020214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL13.246e-3239.33Myosin light chain 1/3, skeletal muscle isoform OS... [more]
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