|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020230 ID=TCONS_00020230|Name=TCONS_00020230|organism=Clytia hemisphaerica|type=transcript|length=5353bpRun BLAST on NCBI transcript from alignment at sc0000350:254040..279859- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020230 ID=TCONS_00020230|Name=TCONS_00020230|organism=Clytia hemisphaerica|type=transcript|length=25820bp|location=Sequence derived from alignment at sc0000350:254040..279859- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020230 vs. Swiss-Prot (Human)
Match: TENS1 (Tensin-1 OS=Homo sapiens GN=TNS1 PE=1 SV=2) HSP 1 Score: 254.218 bits (648), Expect = 6.689e-68 Identity = 128/290 (44.14%), Postives = 188/290 (64.83%), Query Frame = 1
Query: 2437 VKFDKDTVDLWYRPNITRDEATSLLRDAEPGSFLVRDSQTYDGAFGLAVKVDSPPASVLKQVDGDVSKIDLENELIRHFLIEPSKKGVRLKGSNEEPTFPSLVALIYQHSITKMALPITLLIPYKD----SVDGGNPADNRLSKLSETQLLVKGAACDLLYLGGVKVDKLTGDGAVQYAMNKVASLSTQLKTTIVNIKVNQDGITLTDNNRRMFFRQHFQMANVLHCGVDPKSRQVNLKTFANREDKDVGCFGFVVENE-RKTEHQCYMFAELEQDQPASAVINFIHKAM 3291
VKF +DT WY+P I+R++A +LL+D EPG+F++RDS ++ GA+GLA+KV SPP ++++Q K D+ +EL+RHFLIE +GV+LKG EP F SL AL+YQHSI +ALP L+IP +D S D PA+ S LL +GAAC++L++ V ++ LTG A+ A ++ + TIV+ KV+ GITLTDN R++FFR+H+ + V C +DP+ R+ +KT K FGFV + T++ C++FAEL+ +QPASA++NF+ K M
Sbjct: 1453 VKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDSHSFRGAYGLAMKVSSPPPTIMQQNK----KGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSLSALVYQHSIIPLALPCKLVIPNRDPTDESKDSSGPAN------STADLLKQGAACNVLFVNSVDMESLTGPQAISKATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKW-MKTEGGAPAK---LFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVM 1728 The following BLAST results are available for this feature:
BLAST of TCONS_00020230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.