|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020245 ID=TCONS_00020245|Name=TCONS_00020245|organism=Clytia hemisphaerica|type=transcript|length=1554bp
CATATATTTAGTTTAACATTGGTCAtgaataatttcaaaactttgCTCCT
GATTTTGGTTTCTGTGAATTTCCTCTCTTGTCACTCAAAGCTACAAAATG
ATGACTCTGAGGTTATTCTACATAAACAACAGAACGATCAAATTCAACAG
AAATACAAAATCATGTCCGAATTAATGTCCGAAGTACTCCCCGGCTCATA
TGATACAAATCGGACAAGAAGTTTTCAACGATTTATGAGAATGTTCAAGA
GAAAGAGTCGAATGAGACAAAGACGTCAACGAGATTGCAAGGTTGAATAT
AGTAAGATTCAGAAATGGCTTTTCGCACAGATTGCTTCCAttcgaaagaa
gaaagaaagtcAAGAAGAAAAATGTCGCATACAACAGTATTCTGAGGACA
CGCATTTACCGACTGAAAGGAAAAACGACGACGGCACTTCTTCACCACAT
TTCAAAAGGATTACAGGAAAATTTTGTTATCCAAAAGGATCTCTGGAGGA
TGATGGAACACTGAAGCTTTGTACTGAATGTTATGTTCAAATCGATCTTG
GACCAAGGCATTATCCAAGGTACATCAACGAAATCGAATGTGGACAGAAC
TGGCCGAATGATTATTTCTGTTTAACACATGAAGGTGTTTGTGCACCCAA
AGTCATTTATATTACCTTCTTGTACGATCGACGGAACGAAGGGGAGACAC
ATCTTTATAATTGGATTGAATACATGCAACCGTTGACTGTGGGGTGTAAT
TGTCAAATACGTCAAGAGTCGTTATTCAAAATGTTTATTTAAAACAACTG
TATCGTCAGAGGAAGTGAGAGCTTTGGTGTTTAGTCAGGATTTATGGGGG
ATCTAACTTTCATCAAACAGTTTCAAGACATTTTTACTGAGGAAAGGAGC
AATACGTTCTTGAATGGAAAATTCGTTGAATGTTGGACCATTAGAAAATA
TAGGTGTTATAAACAAGATTTTATTGAAGGCATCACATTtcattttacaa
atattttgttaaaagttaATAAAACTAACTAAATCTTACAAAGAAGAAAG
ACAGCATACTAATCAAGGATAGCTCTTGTTTTTCCGAAATTTTGACCTGC
TTGCGATGCTCCCTTGTTCCATCCTGCTTGTAGACCGATATGCGAATTTC
CCTCTCGAAGTTGTTCCTCTGTGAAATTCCGTTTATTTTCTTCTGATTCC
TTTGGGCCGATACCTCTCTTTCCCTTTTGGCTTACTTTACGTCCAAGAGC
AAAGAGAGTAGTCAATACTTCAGCCATATTGATTCCGTCATATAAGGACA
CTGTTTGGAAAAGATCGACTTTCTTGCATCCATAATTTTCGCAAGCTTTC
AAGAAATTATCAATATTTTCCATTTGCTTGAAagcgatttcactttcgtt
gATTTTCTTGACGCTCCCTGGTTCAATAGCGTTGATGAGTTGACAAAGGA
TTTTTCCATCCTTGAGTTTGGCTTGAAGACTTTCAGCACCTCGTACATCC
TCTAAATCACAGTCTTTGACATGGTGCATGATCCATTCGATAGCTTCTTG
TTCT Run BLAST on NCBI protein sequence of TCONS_00020245-protein >TCONS_00020245-protein ID=TCONS_00020245-protein|Name=TCONS_00020245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
HIFSLTLVMNNFKTLLLILVSVNFLSCHSKLQNDDSEVILHKQQNDQIQQ
KYKIMSELMSEVLPGSYDTNRTRSFQRFMRMFKRKSRMRQRRQRDCKVEY
SKIQKWLFAQIASIRKKKESQEEKCRIQQYSEDTHLPTERKNDDGTSSPH
FKRITGKFCYPKGSLEDDGTLKLCTECYVQIDLGPRHYPRYINEIECGQN
WPNDYFCLTHEGVCAPKVIYITFLYDRRNEGETHLYNWIEYMQPLTVGCN
CQIRQESLFKMFI Run BLAST on NCBI transcript from alignment at sc0000350:403655..406542- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020245 ID=TCONS_00020245|Name=TCONS_00020245|organism=Clytia hemisphaerica|type=transcript|length=2888bp|location=Sequence derived from alignment at sc0000350:403655..406542- (Clytia hemisphaerica)
CATATATTTAGTTTAACATTGGTCATGAATAATTTCAAAACTTTGGTAGG
TGTATTTTTCTAAACTATTCTTTTTGATTTGGTTTATGCGATAATATCAT
TCTTATGGCTGGTTAATGACCACGACGAATCAGGCTACTTCAATTATTCA
AAGCTTCTATCGCCAAAACAATTCAAAGTTCAATTTTCTCAAAGACGACT
TTGCAGATCTGTCAAGCAGTCCTGCATATGAATGAAACATTGATACTATT
GCTCTAGTAAGCTGGAATATGGATTAAGTTACTCTCTGTTATTCAAATCT
TTCTCTTATTCGAAATAAACTTTTTTTGATTCCTTGAAGATCGAATTGGG
TAAAGATAGAGTAAGCTGTGTTTCTATTCACTATTTATTCTCTTTAGCTC
CTGATTTTGGTTTCTGTGAATTTCCTCTCTTGTCACTCAAAGCTACAAAA
TGATGACTCTGAGGTTATTCTACATAAACAACAGAACGATCAAATTCAAC
AGAAATACAAAATCATGTCCGAATTAATGTCCGAAGTACTCCCCGGCTCA
TATGATACAAATCGGACAAGAAGTTTTCAACGATTTATGAGAATGTTCAA
GAGAAAGAGTCGAATGAGACAAAGACGTCAACGAGATTGCAAGGTTGAAT
ATAGTAAGATTCAGAAATGGCTTTTCGCACAGATTGCTTCCATTCGAAAG
AAGAAAGAAAGTCAAGAAGAAAAATGTCGCATACAACAGTATTCTGAGGA
CACGCATTTACCGACTGAAAGGAAAAACGGTATCACACTTACTTATATAT
TTACGATGTTTAAATTCCTTTGTATTACTCATGATTTGATATACTGCTTA
TACTAGACTCTTTCAAAGGGGCTCCGACGGTAAACGACGATATTGCTAGG
TAGGCGGTACTGCACCCTTCACTGGATGCAATAAGAGATTTCCAACCCTG
GAAATATCTTGAAAATATCTTTTGTAAATATTATGGAAATACGACTTTTC
TATATTTCCAAAGTTGTGGAAATATCATATTTCATGATATTTCATGATAT
TTCCAATTCTAAAATTCATTGAAACATCATATTTTCAAGACATTTCCAGG
ATTGGAAATCTCTTATTTCGCCCAGTGCTTGTATCAGTTAAAAAAGAGCA
AATTAAAGGTAGCTAAACGACATAAAGCTGTATCATTTGGAGTGTAGCCA
TGTAAACTTGACAGTATTTATTTTAAGACGACGGCACTTCTTCACCACAT
TTCAAAAGGATTACAGGAAAATTTTGTTATCCAAAAGGATCTCTGGAGGA
TGATGGAACACTGAAGCTTTGTACTGAATGTTATGTTCAAATCGATCTTG
GACCAAGGTACAATAATGGACAAAAATGTTGAGACAAAAGCTAATTCTAA
GCTGCTTCCACCCTTTCCCCCATTTGCAATGTTCAATATTTGGTGTGACG
GCCTTGCGGACTGAATGTTGCAGCTGGAGAGAGGGGCCTATTTTATACAT
TTTTACTGCAAATTCCTGTGTTTTTCTCAAACATTTTTGTCCAAGATTGT
AGTTTATTTTACGCTTATTTCTTATAAACACCAAGAAACACCCCTGTCCC
AATGACCTGAACTTGGACAGATTTACTGTTTTAAAAGCCTGATTCTCAAG
ACGTTCTAAAAAGAGCCTTAGTATCAAGAGGCAGTTTTGAAACTCAGACT
CGCCTAAAGGTTAACAGTAAAACCAGCTATGTTTTTAAGACTTAATTGAA
AATATCTAACGTGAAATCTTCCTCTTTCTAAAAACAACTGAAAATTTGAA
ACAATCATCTTTGAAAAAAGTATTATGCCAAGTGAATTTATCCAACTATG
TTTTTTTTTACCTTGAACTAACTAAACGTTTTCTCATTAAGGCATTATCC
AAGGTACATCAACGAAATCGAATGTGGACAGAACTGGCCGAATGATTATT
TCTGTTTAACACATGAAGGTGTTTGTGCACCCAAAGTCATTTATATTACC
TTCTTGTACGATCGACGGAACGAAGGGGAGACACATCTTTATAATTGGAT
TGAATACATGCAACCGTTGACTGTGGGGTGTAATTGTCAAATACGTCAAG
AGTCGTTATTCAAAATGTTTATTTAAAACAACTGTATCGTCAGAGGAAGT
GAGAGCTTTGGTGTTTAGTCAGGATTTATGGGGGATCTAACTTTCATCAA
ACAGTTTCAAGACATTTTTACTGAGGAAAGGAGCAATACGTTCTTGAATG
GAAAATTCGTTGAATGTTGGACCATTAGAAAATATAGGTGTTATAAACAA
GATTTTATTGAAGGCATCACATTTCATTTTACAAATATTTTGTTAAAAGT
TAATAAAACTAACTAAATCTTACAAAGAAGAAAGACAGCATACTAATCAA
GGATAGCTCTTGTTTTTCCGAAATTTTGACCTGCTTGCGATGCTCCCTTG
TTCCATCCTGCTTGTAGACCGATATGCGAATTTCCCTCTCGAAGTTGTTC
CTCTGTGAAATTCCGTTTATTTTCTTCTGATTCCTTTGGGCCGATACCTC
TCTTTCCCTTTTGGCTTACTTTACGTCCAAGAGCAAAGAGAGTAGTCAAT
ACTTCAGCCATATTGATTCCGTCATATAAGGACACTGTTTGGAAAAGATC
GACTTTCTTGCATCCATAATTTTCGCAAGCTTTCAAGAAATTATCAATAT
TTTCCATTTGCTTGAAAGCGATTTCACTTTCGTTGATTTTCTTGACGCTC
CCTGGTTCAATAGCGTTGATGAGTTGACAAAGGATTTTTCCATCCTTGAG
TTTGGCTTGAAGACTTTCAGCACCTCGTACATCCTCTAAATCACAGTCTT
TGACATGGTGCATGATCCATTCGATAGCTTCTTGTTCT Coding sequence (CDS) from alignment at sc0000350:403655..406542- >TCONS_00020245 ID=TCONS_00020245|Name=TCONS_00020245|organism=Clytia hemisphaerica|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000350:403655..406542- (Clytia hemisphaerica)
GCATTATCCAAGGTACATCAACGAAATCGAATGTGGACAGAACTGGCCGA
ATGATTATTTCTGTTTAACACATGAAGGTGTTTGTGCACCCAAAGTCATT
TATATTACCTTCTTGTACGATCGACGGAACGAAGGGGAGACACATCTTTA
TAATTGGATTGAATACATGCAACCGTTGACTGTGGGGTGTAATTGTCAAA
TACGTCAAGAGTCGTTATTCAAAATGTTTATTTAAACGACGGCACTTCTT
CACCACATTTCAAAAGGATTACAGGAAAATTTTGTTATCCAAAAGGATCT
CTGGAGGATGATGGAACACTGAAGCTTTGTACTGAATGTTATGTTCAAAT
CGATCTTGGACCAAGCTCCTGATTTTGGTTTCTGTGAATTTCCTCTCTTG
TCACTCAAAGCTACAAAATGATGACTCTGAGGTTATTCTACATAAACAAC
AGAACGATCAAATTCAACAGAAATACAAAATCATGTCCGAATTAATGTCC
GAAGTACTCCCCGGCTCATATGATACAAATCGGACAAGAAGTTTTCAACG
ATTTATGAGAATGTTCAAGAGAAAGAGTCGAATGAGACAAAGACGTCAAC
GAGATTGCAAGGTTGAATATAGTAAGATTCAGAAATGGCTTTTCGCACAG
ATTGCTTCCATTCGAAAGAAGAAAGAAAGTCAAGAAGAAAAATGTCGCAT
ACAACAGTATTCTGAGGACACGCATTTACCGACTGAAAGGAAAAACGCAT
ATATTTAGTTTAACATTGGTCATGAATAATTTCAAAACTTTGGCATTATC
CAAGGTACATCAACGAAATCGAATGTGGACAGAACTGGCCGAATGATTAT
TTCTGTTTAACACATGAAGGTGTTTGTGCACCCAAAGTCATTTATATTAC
CTTCTTGTACGATCGACGGAACGAAGGGGAGACACATCTTTATAATTGGA
TTGAATACATGCAACCGTTGACTGTGGGGTGTAATTGTCAAATACGTCAA
GAGTCGTTATTCAAAATGTTTATTTAAACGACGGCACTTCTTCACCACAT
TTCAAAAGGATTACAGGAAAATTTTGTTATCCAAAAGGATCTCTGGAGGA
TGATGGAACACTGAAGCTTTGTACTGAATGTTATGTTCAAATCGATCTTG
GACCAAGCTCCTGATTTTGGTTTCTGTGAATTTCCTCTCTTGTCACTCAA
AGCTACAAAATGATGACTCTGAGGTTATTCTACATAAACAACAGAACGAT
CAAATTCAACAGAAATACAAAATCATGTCCGAATTAATGTCCGAAGTACT
CCCCGGCTCATATGATACAAATCGGACAAGAAGTTTTCAACGATTTATGA
GAATGTTCAAGAGAAAGAGTCGAATGAGACAAAGACGTCAACGAGATTGC
AAGGTTGAATATAGTAAGATTCAGAAATGGCTTTTCGCACAGATTGCTTC
CATTCGAAAGAAGAAAGAAAGTCAAGAAGAAAAATGTCGCATACAACAGT
ATTCTGAGGACACGCATTTACCGACTGAAAGGAAAAACGCATATATTTAG
TTTAACATTGGTCATGAATAATTTCAAAACTTTGGCATTATCCAAGGTAC
ATCAACGAAATCGAATGTGGACAGAACTGGCCGAATGATTATTTCTGTTT
AACACATGAAGGTGTTTGTGCACCCAAAGTCATTTATATTACCTTCTTGT
ACGATCGACGGAACGAAGGGGAGACACATCTTTATAATTGGATTGAATAC
ATGCAACCGTTGACTGTGGGGTGTAATTGTCAAATACGTCAAGAGTCGTT
ATTCAAAATGTTTATTTAAACGACGGCACTTCTTCACCACATTTCAAAAG
GATTACAGGAAAATTTTGTTATCCAAAAGGATCTCTGGAGGATGATGGAA
CACTGAAGCTTTGTACTGAATGTTATGTTCAAATCGATCTTGGACCAAGC
TCCTGATTTTGGTTTCTGTGAATTTCCTCTCTTGTCACTCAAAGCTACAA
AATGATGACTCTGAGGTTATTCTACATAAACAACAGAACGATCAAATTCA
ACAGAAATACAAAATCATGTCCGAATTAATGTCCGAAGTACTCCCCGGCT
CATATGATACAAATCGGACAAGAAGTTTTCAACGATTTATGAGAATGTTC
AAGAGAAAGAGTCGAATGAGACAAAGACGTCAACGAGATTGCAAGGTTGA
ATATAGTAAGATTCAGAAATGGCTTTTCGCACAGATTGCTTCCATTCGAA
AGAAGAAAGAAAGTCAAGAAGAAAAATGTCGCATACAACAGTATTCTGAG
GACACGCATTTACCGACTGAAAGGAAAAACGCATATATTTAGTTTAACAT
TGGTCATGAATAATTTCAAAACTTTGGCATTATCCAAGGTACATCAACGA
AATCGAATGTGGACAGAACTGGCCGAATGATTATTTCTGTTTAACACATG
AAGGTGTTTGTGCACCCAAAGTCATTTATATTACCTTCTTGTACGATCGA
CGGAACGAAGGGGAGACACATCTTTATAATTGGATTGAATACATGCAACC
GTTGACTGTGGGGTGTAATTGTCAAATACGTCAAGAGTCGTTATTCAAAA
TGTTTATTTAAACGACGGCACTTCTTCACCACATTTCAAAAGGATTACAG
GAAAATTTTGTTATCCAAAAGGATCTCTGGAGGATGATGGAACACTGAAG
CTTTGTACTGAATGTTATGTTCAAATCGATCTTGGACCAAGCTCCTGATT
TTGGTTTCTGTGAATTTCCTCTCTTGTCACTCAAAGCTACAAAATGATGA
CTCTGAGGTTATTCTACATAAACAACAGAACGATCAAATTCAACAGAAAT
ACAAAATCATGTCCGAATTAATGTCCGAAGTACTCCCCGGCTCATATGAT
ACAAATCGGACAAGAAGTTTTCAACGATTTATGAGAATGTTCAAGAGAAA
GAGTCGAATGAGACAAAGACGTCAACGAGATTGCAAGGTTGAATATAGTA
AGATTCAGAAATGGCTTTTCGCACAGATTGCTTCCATTCGAAAGAAGAAA
GAAAGTCAAGAAGAAAAATGTCGCATACAACAGTATTCTGAGGACACGCA
TTTACCGACTGAAAGGAAAAACGCATATATTTAGTTTAACATTGGTCATG
AATAATTTCAAAACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020245-exon-sc0000350-1575043694:406498..406542 | TCONS_00020245-exon-sc0000350-1575043694:406498..406542 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1575043694:405764..406145 | TCONS_00020245-exon-sc0000350-1575043694:405764..406145 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1575043694:405186..405315 | TCONS_00020245-exon-sc0000350-1575043694:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1575043694:403655..404651 | TCONS_00020245-exon-sc0000350-1575043694:403655..404651 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1510915933:406498..406542 | TCONS_00020245-exon-sc0000350-1510915933:406498..406542 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1510915933:405764..406145 | TCONS_00020245-exon-sc0000350-1510915933:405764..406145 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1510915933:405186..405315 | TCONS_00020245-exon-sc0000350-1510915933:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1510915933:403655..404651 | TCONS_00020245-exon-sc0000350-1510915933:403655..404651 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1491911889:406498..406542 | TCONS_00020245-exon-sc0000350-1491911889:406498..406542 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1491911889:405764..406145 | TCONS_00020245-exon-sc0000350-1491911889:405764..406145 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1491911889:405186..405315 | TCONS_00020245-exon-sc0000350-1491911889:405186..405315 | Clytia hemisphaerica | exon |
| TCONS_00020245-exon-sc0000350-1491911889:403655..404651 | TCONS_00020245-exon-sc0000350-1491911889:403655..404651 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:403655..406542 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
BLAST of TCONS_00020245 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3) HSP 1 Score: 135.961 bits (341), Expect = 1.042e-36 Identity = 81/173 (46.82%), Postives = 101/173 (58.38%), Query Frame = -2
Query: 1065 EQEAIEWIMHHVKDCDLEDVRGAESLQAKLKDGKILCQLINAIEP---GSVKKINESEIAFKQMENIDNFLKACENYGCKKVDLFQTVSLYDGINMAEVLTTLFALGRKVSQK------GKRGIGPKESEENKRNFTEEQLREGNSHIGLQAGWNKGASQAGQN-FGKTRAIL 1553
EQ I+WI + G E+ Q LKDG +LC+LINA+ P VKKI S +AFKQME I FL+A E YG D+FQTV L++G NMA V TL LG + G PK+S+EN RNF++ QL+EG + IGLQ G N+GASQAG +G R IL
Sbjct: 27 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199
The following BLAST results are available for this feature:
|
