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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020250 ID=TCONS_00020250|Name=TCONS_00020250|organism=Clytia hemisphaerica|type=transcript|length=1698bp
TTTCAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTGTTCC
TTGCATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTACCATC
ACAATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAGCTAG
CATCTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCTACTT
CCGACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTGAAAT
GGCTGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGATTCGC
CATTTTCTGTAGTGGTTGtgtcattttcaattttgctGTTGACATTATCT
GCTTTGGATTCGCCATTTTCTGTAGTGGTTGtgtcattttcaattttgct
GTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTgcgtcat
tttcaatttcaccgTTGACAATATCTGCTTTGGATTCGCCATTTTCTGCT
TTGGTTGTGTCATTTTCGACTTCACCGTTGACATTATCTGCTTTGGATTC
GCCATTTTCTGCAGTGGTTGTGTCATTTTCGACTTCACCGTTGACATTAT
CTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGACTTCA
CCGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGT
CTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTG
CTTTGGTTGTgtcattttcgatttcaccGTTGACATTATCTGCTTTGGGT
TCGCCATTTTCTGCTTTGGTTGAGGTCTCACAAATATCCCTGACTTAGTT
ATCTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTgtcattttcgattt
caccGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAG
GTCTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTC
TGCTTTGGTTGTgtcattttcgatttcaccGTTGACATTATCTGCTTTGG
GTTCGCCATTTTCTGCTTTGGTTGTgtcattttcgatttcaccGTTGACA
TTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTGTGCCATTTTCGAT
TTCGCTGTTGACATTATCGGCTTTGGGTTCGCCATTTTCTGCAGTGGTTG
TACCATTTTCGATTTCGCCGTTGACATTATCGGCTTTGGGTTCGCCATTT
TCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGACATTATCGGCTTT
GGGTTCGCCATTTTCTGCTTTGGATGTGTCATTTTTTATTTCGCCGTTGA
CAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGTTGTGTCATTTTCG
ATTTCGTCGTAAACAATATCTGATTTATGGCCTTCTTCAGATGGACTTTC
CAAAtcgaattcatttttttttgaatcgAGTTTTCCATTTTCTCCCTCCT
TACTGATAAATATTTCTGGATTCACGATGACATCTTGTTCATTGAAGCTG
GCGCTTTTTACTTTTCCATCAAGTCTTTTGTTTTTTCCAGGTTTGAGGTA
TTTAGTAGGATCAACGTCCATCATTTGGAAGGTTTTATCTTGTAGGAAGG
GCAGCAATTCAATCAGTGAATAAACATCGTTAATCCGGTAAAGCATCT Run BLAST on NCBI transcript from alignment at sc0000350:437047..439059- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020250 ID=TCONS_00020250|Name=TCONS_00020250|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at sc0000350:437047..439059- (Clytia hemisphaerica)
TTTCAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTGTTCC
TTGCATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTACCATC
ACAATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAGCTAG
CATCTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCTACTT
CCGACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTGAAAT
GGCTGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGATTCGC
CATTTTCTGTAGTGGTTGTGTCATTTTCAATTTTGCTGTTGACATTATCT
GCTTTGGATTCGCCATTTTCTGTAGTGGTTGTGTCATTTTCAATTTTGCT
GTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTGCGTCAT
TTTCAATTTCACCGTTGACAATATCTGCTTTGGATTCGCCATTTTCTGCT
TTGGTTGTGTCATTTTCGACTTCACCGTTGACATTATCTGCTTTGGATTC
GCCATTTTCTGCAGTGGTTGTGTCATTTTCGACTTCACCGTTGACATTAT
CTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGACTTCA
CCGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAGGT
CTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTCTG
CTTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCTTTGGGT
TCGCCATTTTCTGCTTTGGTTGAGGTCTCACAAATATCCCTGACTTAGTT
ATCTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGATTT
CACCGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGAG
GTCTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTTTC
TGCTTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCTTTGG
GTTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGATTTCACCGTTGACA
TTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGTGTCATTTTTTAT
TTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGTTG
TGTCATTTTCGACTTCACCGTTGACGTTATCTGCTTTGGATTCGCCATTT
TCTGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACATTATCTGCTTT
GGATTCGCCATTTTCTGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGA
CATTATCTACTTTGGTTTCGCCATTTTCTGCTTTGGTTGTATCATTTTCG
ACTTCACCGTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGT
TGTGCCATTTTCGATTTCGCTGTTGACATTATCGGCTTTGGGTTCGCCAT
TTTCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGACATTATCGGCT
TTGGGTTCGCCATTTTCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTT
GACATTATCGGCTTTGGGTTCGCCATTTTCTGCTTTGGATGTGTCATTTT
TTATTTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTG
GTTGTGTCATTTTCGATTTCGTCGTAAACAATATCTGATTTATGGCCTTC
TTCAGATGGACTTTCCAAATCGAATTCATTTTTTTTTGAATCGAGTTTTC
CATTTTCTCCCTCCTTACTGATAAATATTTCTGGATTCACGATGACATCT
TGTTCATTGAAGCTGGCGCTTTTTACTTTTCCATCAAGTCTTTTGTTTTT
TCCAGGTTTGAGGTATTTAGTAGGATCAACGTCCATCATTTGGAAGGTTT
TATCTTGTAGGAAGGGCAGCAATTCAATCAGTGAATAAACATCGTTAATC
CGGTAAAGCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020250-exon-sc0000350-1575043694:437961..439059 | TCONS_00020250-exon-sc0000350-1575043694:437961..439059 | Clytia hemisphaerica | exon |
| TCONS_00020250-exon-sc0000350-1575043694:437047..437645 | TCONS_00020250-exon-sc0000350-1575043694:437047..437645 | Clytia hemisphaerica | exon |
| TCONS_00020250-exon-sc0000350-1510915933:437961..439059 | TCONS_00020250-exon-sc0000350-1510915933:437961..439059 | Clytia hemisphaerica | exon |
| TCONS_00020250-exon-sc0000350-1510915933:437047..437645 | TCONS_00020250-exon-sc0000350-1510915933:437047..437645 | Clytia hemisphaerica | exon |
| TCONS_00020250-exon-sc0000350-1491911889:437961..439059 | TCONS_00020250-exon-sc0000350-1491911889:437961..439059 | Clytia hemisphaerica | exon |
| TCONS_00020250-exon-sc0000350-1491911889:437047..437645 | TCONS_00020250-exon-sc0000350-1491911889:437047..437645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:437047..439059 - |
Blast
The following BLAST results are available for this feature:
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