TCONS_00020251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020251
Unique NameTCONS_00020251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020251 ID=TCONS_00020251|Name=TCONS_00020251|organism=Clytia hemisphaerica|type=transcript|length=1261bp
ACCCTTTCAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTG
TTCCTTGCATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTAC
CATCACAATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAG
CTAGCATCTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCT
ACTTCCGACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTG
AAATGGCTGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGGT
TCGCCATTTTCTGCTTTGGTTGTgtcattttcgatttcaccGTTGACATT
ATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGTGTCATTTTTTATTT
CGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGTTGTG
TCATTTTCGACTTCACCGTTGACGTTATCTGCTTTGGATTCGCCATTTTC
TGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACATTATCTGCTTTGG
ATTCGCCATTTTCTGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACA
TTATCTACTTTGGTTTCGCCATTTTCTGCTTTGGTTGTATCATTTTCGAC
TTCACCGTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTG
TGCCATTTTCGATTTCGCTGTTGACATTATCGGCTTTGGGTTCGCCATTT
TCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGACATTATCGGCTTT
GGGTTCGCCATTTTCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGA
CATTATCGGCTTTGGGTTCGCCATTTTCTGCTTTGGATGTGTCATTTTTT
ATTTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTGGT
TGTGTCATTTTCGATTTCGTCGTAAACAATATCTGATTTATGGCCTTCTT
CAGATGGACTTTCCAAAtcgaattcatttttttttgaatcgAGTTTTCCA
TTTTCTCCCTCCTTACTGATAAATATTTCTGGATTCACGATGACATCTTG
TTCATTGAAGCTGGCGCTTTTTACTTTTCCATCAAGTCTTTTGTTTTTTC
CAGGTTTGAGGTATTTAGTAGGATCAACGTCCATCATTTGGAAGGTTTTA
TCTTGTAGGAAGGGCAGCAATTCAATCAGTGAATAAACATCGTTAATCCG
GTAAAGCATCT
Run BLAST on NCBI

transcript from alignment at sc0000350:437047..439063-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020251 ID=TCONS_00020251|Name=TCONS_00020251|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000350:437047..439063- (Clytia hemisphaerica)
ACCCTTTCAGCTAGCATCTTGATTTGTAAATTGTAGACAAATTCCATGTG
TTCCTTGCATCTTTGTAATGCAGGAGCAGTAATGTTTAATAAGTCTTTAC
CATCACAATCAGTTTTCCCTGGATCGGATTTAACGTTGTTTTCTGCAAAG
CTAGCATCTTTGTCTCTCCTGTGTTCGCCATTTTCTGAAATGGTTGTGCT
ACTTCCGACTACACCGTTGATATTATCTGCTTTGGGTTCGCCAGTTGCTG
AAATGGCTGTTCCATTTTCGACTTCGCTGTTGACATTATCTGCTTTGGAT
TCGCCATTTTCTGTAGTGGTTGTGTCATTTTCAATTTTGCTGTTGACATT
ATCTGCTTTGGATTCGCCATTTTCTGTAGTGGTTGTGTCATTTTCAATTT
TGCTGTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAGTGGTTGCG
TCATTTTCAATTTCACCGTTGACAATATCTGCTTTGGATTCGCCATTTTC
TGCTTTGGTTGTGTCATTTTCGACTTCACCGTTGACATTATCTGCTTTGG
ATTCGCCATTTTCTGCAGTGGTTGTGTCATTTTCGACTTCACCGTTGACA
TTATCTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGAC
TTCACCGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTG
AGGTCTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCATTT
TCTGCTTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCTTT
GGGTTCGCCATTTTCTGCTTTGGTTGAGGTCTCACAAATATCCCTGACTT
AGTTATCTGCTTTGGATTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCG
ATTTCACCGTTGACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGT
TGAGGTCTCACAAATATCCCTGACTTAGTTATCTGCTTTGGATTCGCCAT
TTTCTGCTTTGGTTGTGTCATTTTCGATTTCACCGTTGACATTATCTGCT
TTGGGTTCGCCATTTTCTGCTTTGGTTGTGTCATTTTCGATTTCACCGTT
GACATTATCTGCTTTGGGTTCGCCATTTTCTGCTTTGGTTGTGTCATTTT
TTATTTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGCAGTG
GTTGTGTCATTTTCGACTTCACCGTTGACGTTATCTGCTTTGGATTCGCC
ATTTTCTGCAGTGGTTGTGTCATTTTTTATTTCGCCGTTGACATTATCTG
CTTTGGATTCGCCATTTTCTGCAGTGGTTGTGTCATTTTTTATTTCGCCG
TTGACATTATCTACTTTGGTTTCGCCATTTTCTGCTTTGGTTGTATCATT
TTCGACTTCACCGTTGACATTATCTGCTTTGGATTCGCCATTTTCTGCAG
TGGTTGTGCCATTTTCGATTTCGCTGTTGACATTATCGGCTTTGGGTTCG
CCATTTTCTGCAGTGGTTGTACCATTTTCGATTTCGCCGTTGACATTATC
GGCTTTGGGTTCGCCATTTTCTGCAGTGGTTGTACCATTTTCGATTTCGC
CGTTGACATTATCGGCTTTGGGTTCGCCATTTTCTGCTTTGGATGTGTCA
TTTTTTATTTCGCCGTTGACAATATCTGCTTTGGGTTCGCCATTTTCTGC
AGTGGTTGTGTCATTTTCGATTTCGTCGTAAACAATATCTGATTTATGGC
CTTCTTCAGATGGACTTTCCAAATCGAATTCATTTTTTTTTGAATCGAGT
TTTCCATTTTCTCCCTCCTTACTGATAAATATTTCTGGATTCACGATGAC
ATCTTGTTCATTGAAGCTGGCGCTTTTTACTTTTCCATCAAGTCTTTTGT
TTTTTCCAGGTTTGAGGTATTTAGTAGGATCAACGTCCATCATTTGGAAG
GTTTTATCTTGTAGGAAGGGCAGCAATTCAATCAGTGAATAAACATCGTT
AATCCGGTAAAGCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011358XLOC_011358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020251-exon-sc0000350-1575043694:438780..439063TCONS_00020251-exon-sc0000350-1575043694:438780..439063Clytia hemisphaericaexon
TCONS_00020251-exon-sc0000350-1575043694:437047..438023TCONS_00020251-exon-sc0000350-1575043694:437047..438023Clytia hemisphaericaexon
TCONS_00020251-exon-sc0000350-1510915933:438780..439063TCONS_00020251-exon-sc0000350-1510915933:438780..439063Clytia hemisphaericaexon
TCONS_00020251-exon-sc0000350-1510915933:437047..438023TCONS_00020251-exon-sc0000350-1510915933:437047..438023Clytia hemisphaericaexon
TCONS_00020251-exon-sc0000350-1491911889:438780..439063TCONS_00020251-exon-sc0000350-1491911889:438780..439063Clytia hemisphaericaexon
TCONS_00020251-exon-sc0000350-1491911889:437047..438023TCONS_00020251-exon-sc0000350-1491911889:437047..438023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:437047..439063 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.274874	0.0017945	0	0.320155	0.752257	0.851737	0	0	0.287639	0.353045	0	0.159117	0.322604	0	0	0	0.199943	0	0	0	1.19627e-07	1.68733	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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