TCONS_00020271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020271
Unique NameTCONS_00020271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020271 ID=TCONS_00020271|Name=TCONS_00020271|organism=Clytia hemisphaerica|type=transcript|length=345bp
ggacctgcCCCGCTCTTAGAAAAACAACTGATGTTGATGTTGTCGACATT
GACCAGTCATCTGATTACAATTTCTCTGCTGGTAAACAAAGTGAAGATga
caaaaccaacaaaacaagaaGAGGCGAAATCAAAGATAATGAAAAGAAAT
CCCAAAtctgcaaattttacaaaagtGGAACATGCANAAAAAAATCTATT
CTTACTCCTCACCCAGTGTACAACTTCTTTGCCTATACTCATGCATCGAA
AATCTGGCTATCCTGGTAGTCTACCGACAACCTGACGACAAAGCAAATGG
TAATCCTTCAACCGCAAATGATTTTATCATTCCTATCAATGGTGT
Run BLAST on NCBI

transcript from alignment at sc0000350:362453..362797

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020271 ID=TCONS_00020271|Name=TCONS_00020271|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0000350:362453..362797 (Clytia hemisphaerica)
ACACCATTGATAGGAATGATAAAATCATTTGCGGTTGAAGGATTACCATT
TGCTTTGTCGTCAGGTTGTCGGTAGACTACCAGGATAGCCAGATTTTCGA
TGCATGAGTATAGGCAAAGAAGTTGTACACTGGGTGAGGAGTAAGAATAG
ATTTTTTTNTGCATGTTCCacttttgtaaaatttgcagaTTTGGGATTTC
TTTTCATTATCTTTGATTTCGCCTCttcttgttttgttggttttgtcATC
TTCACTTTGTTTACCAGCAGAGAAATTGTAATCAGATGACTGGTCAATGT
CGACAACATCAACATCAGTTGTTTTTCTAAGAGCGGGgcaggtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011375XLOC_011375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020271-exon-sc0000350-1491911889:362453..362797TCONS_00020271-exon-sc0000350-1491911889:362453..362797Clytia hemisphaericaexon
TCONS_00020271-exon-sc0000350-1510915933:362453..362797TCONS_00020271-exon-sc0000350-1510915933:362453..362797Clytia hemisphaericaexon
TCONS_00020271-exon-sc0000350-1575043694:362453..362797TCONS_00020271-exon-sc0000350-1575043694:362453..362797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:362453..362797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.44509	2.64477	2.95749	6.6177	11.2573	10.229	3.68921	9.41944	3.29614	2.7229	0	3.56718	3.12287	1.58934	1.33315	2.06653	2.34996	2.09589	0.277305	1.95079	1.92273	1.94967	1.67836	1.63157	1.96055	2.98278	0.932835	3.05396	1.37081	1.6181
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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