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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020280 ID=TCONS_00020280|Name=TCONS_00020280|organism=Clytia hemisphaerica|type=transcript|length=993bp
CGCCcacaacaagcaaaaaaatttaaatttgtttcGGCGGTTGGCACAAG
AGCAGTCgatgtaaacaaagatggcggcaaaaaaaATTCGATAAGAAATA
ATGCGAGGATGAGAAAAAGAAGAGGGAAAAGAACATTACCACATTATAAA
ACACAACATGCAAACTGAAGGAAAAATCATTAATTAGATATAGGCAAACT
AACAGGAATCCTTTCTTTCAGaaaaatgaataATTATATTGGTCTGCAGA
GTGAATACCAACAACAGTTCATTGGTGATAGCGATGGgacttttcgagaa
aattatCGAAACATGTTACGAGAACGAAGCCGAAGAATATCTGTTGAAAG
AAGTCATACACCGTTCACATGGTTTGATATTAATCAAAATGTCAGAGAAG
ACAAAAACGCTAGTATTATAATAGACGATTCAATTATTGCAAGGTCGAAA
TCTGCTGTACCGGTTGTAGAGAAATATAAATCACAGTCCACTTCACCTAT
GTCAACATCGTCTCACTCTTCAGACGATGAAGAAAGTTATAAAGAGAACA
TGTTTCAAAGAAGCCAAAGTGTTCAAACAAATTTTGATATGGAAAAACAT
GATATTGAAGTACAAACTCCTGTTCGACATCGTCCTTGGTTAAAACCAAA
GGCATCAGTTCGAAAAAAGTCTGCTACTAAACGCCCTATTGATAAAAAGT
CTGCATTTGTTCATGAAAGACCTTTAATAGCTTATGGGCGAGGTGATAAA
TCCTCTTTAGTCAACAAGAAAACATACAATGTTAAAGCACCTTTGACTAG
TGTCAAACCAACTGCTTTTTTAGCTGCAAAGCGTAGAGATGAGCACCTCC
GAAAGACAACAACAAAGAAAGAAAGGGCAtcacaagaaaaattgaaaact
caAGCTCTTATCGAGTCCTTAACAGGCTTTGAACAATGGCAAACTGTTTA
CCAGAAAGAATTTTGTAGATGAATTGATTGATTATTATTTTTG Run BLAST on NCBI protein sequence of TCONS_00020280-protein >TCONS_00020280-protein ID=TCONS_00020280-protein|Name=TCONS_00020280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MNNYIGLQSEYQQQFIGDSDGTFRENYRNMLRERSRRISVERSHTPFTWF
DINQNVREDKNASIIIDDSIIARSKSAVPVVEKYKSQSTSPMSTSSHSSD
DEESYKENMFQRSQSVQTNFDMEKHDIEVQTPVRHRPWLKPKASVRKKSA
TKRPIDKKSAFVHERPLIAYGRGDKSSLVNKKTYNVKAPLTSVKPTAFLA
AKRRDEHLRKTTTKKERASQEKLKTQALIESLTGFEQWQTVYQKEFCR Run BLAST on NCBI transcript from alignment at sc0000351:64665..72213+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020280 ID=TCONS_00020280|Name=TCONS_00020280|organism=Clytia hemisphaerica|type=transcript|length=7549bp|location=Sequence derived from alignment at sc0000351:64665..72213+ (Clytia hemisphaerica)
CGCCcacaacaagcaaaaaaatttaaatttgtttcGGCGGTTGGCACAAG
AGCAGTCgatgtaaacaaagatggcggcaaaaaaaATTCGATAAGAAATA
ATGCGAGGATGAGAAAAAGAAGAGGGAAAAGAACATTACCACATTATAAA
ACACAACATGCAAACTGAAGGAAAAATCATTAATTAGATATAGGCAAACT
AACAGGAATCCTTTCTTTCAGGTAATCCTATTCAGCCCCCTTTTATAGGA
AGGGGTTTTATTCGATGGGCTTTTAAAAAATAGTGACTGTAGTGCATttt
ggtagagcatccagctacggtgtaCAAGGTTGGGTTTAACCTCAAGCCGG
GACATACTGTAACTAAAAGATTCCCAATGGCTCTTGATCATTGTTCATTG
ATGCCTCTCACTCTCTCATCTGCTTGTTGATATGATGCTCATATcgcagc
aattaagagaagggtcAAGGACAAAATTTGAGCAATCCAGAGAAAAAGAG
TGGCATCCTTCAatacctttgggtagatagctattgaAAGAAGAGCCCTT
TGTTGCCTCTGACTGGCAGGATCGCAGACTAACTTaaaagaagggggtgt
ttttttaaAGTACCATGATTGAGTGGTCCTAAATACGACAGCCCTTCCTA
AATCCgatcagtcaggcacatcctggcaaatgaacggggtgagcatttgc
atggggtaaatgagataggacgtctcaggctaaaagcgttaaaatgaata
aaaatgaacttgaaactgaaaaagggaaaaaaggaagaaaactgggaact
tcatttttttgttaaaagtttctttaatcttcgaagacaaaattgaccca
tggaaaaaaaatttcatctatgcagttctttgaaatgaagcaaaatattt
ccaacccggttcaattgcgtggggtattcagtgctattacatcacttttg
ttttcgaccccttgcatttgccaccagcaatcgcaagtgaaaaatacccc
gttcatttgccaggatgtgcctgactgccgatggggtctttcaaagatac
aaactaaaataaaaacaaacctttcgctgtgacgcaatgaagataccaaa
gtgtcaactaaactgagagatttgagaAACTGAACCAATTTAACCAAATA
ACAATATTGTTTcttacaaaacataattttttattacaaaattgttaacg
ttttaaacacgagcaatggattcagaataatagaagtaattatttttaca
aatctCACTTTTTTGAACACATCACagtaattgacatcttgacattatag
tcatcttgttagatgttttgtttcaagagttcttacaatagtttattgtt
caacttggagagggaatctTTGCAAAcataggattttttttcatagcagt
tatttggggggttggatttaggcagggctgtcggatttaggaccactcac
ggtatctAATACGGTAtacatttcaagattttttgattaCTGTTTAGAAG
AAGATTGAATTTTATAAGGTGCTTTTTTATTTGTGGAATAAAGTCTCAGC
AAAACAAGGCAAAAAGAGTCAAAGTTATAGAAAAAAGTTCTGTTTTCCAA
GAAATCATTTGACTAGACTGTTAGAGCTATTCAGGTCTTTTTAGATTACA
TttctaccgtcaactgctccaacttgggactatctgactaTTATTGTGAC
AACAagtcaacaagtcccatgttgcgactactcgtcccaagttggagcag
ttgacggtacgtTTGTGAAAAAAATCTGGAAGTACCtcgattttaagcat
ttttaaagTTCACAATAgtaacgactttctttttattacggaaaccaaac
gagtgagaacaagtcataaaTTAAAACTGAAAGTCAGCACTCCGTGGTTG
TGACAAAGTTTACAAAATTGTTATAAGATAAAacagggggggtcagtgta
ccagaaggtggcatgtatccttgggtgggtgggtgtttgagaaaaaaatt
tgtcatgtactacctgcgtactataattggggtgttgggtccaaaatcaa
ttttgatttttactacctgtgtaccaaaataggggtgttgggtccaagaT
CGATGTTAACAGTATGGAAACAAAAAGTttcagaaattatctgctaaaat
agaaatgtaaagttgttctattataaattgatcaagccaagtttttccaa
gatcattcttccaaacttcttgaaatgaattgaaatcctaccagatccca
ctgaaatgaaggtttatcgagtcaatgtaaacattcgaacattcaAATTC
GAACATTCGAACATCAGAGGTGCCAACTCTNCAGATCCCACTGAAATGAA
GGTTTATcgagtcaatgtaaacattcgaacattcaaattcaaacattcga
atttgaaCATTCGACCATCATATGtaccaactctcacgcattgggtGTGA
GACTCACTCATTTCCACATGTTCTcacgaaatttttgaaaagttcgattt
ctcacgcattttgcatttttgagaaaaattttcctgtttttccgattttt
ggaaaaaagttttcccgatttcccgagtttccaaaaaaaagtttccccga
tttcccaatttttgtaaaaatgtttatagtccggcggcgatccaggatca
ctcttacaattagtaaatatgggtttttattttattttcccatcatatgg
tcccttgggaccccaaaaccagtttttgccaagctggcaaagctgNtatt
ttaacaacttttttccaCATTATTTTTTTGAAGCATTTCTTCGAAGAAGG
TGCCTTTCTcgaaggaattttataacattttatggcagattaaaaagaca
atcagAAAACAAAggcttcttcatttttcattaattttgcaTTTATGGGG
AAGAAGGCGCTGTAGTATAGTGGTCATTAACTGCACAGgtgactgaggtt
cgattcccactctcagcagttcacttggcaagtgaatcgcgattccccat
ggttgcaaaatggtggctatgggtaattatatttgttcttttgctatttt
cttttgttctatgtgaagtaaagacgcttcacaaatcgaagtacttccac
taactgaaGGAAAATTGAGCTTCAACAAAATTCATGTCCACAGGCCTTGA
GACCCTCAACCcccaaaataaagatttttgataacttttgaaatatttgg
ctTTAAATTTTGCAATTGTGCACAAAATATGAATTGGCATCTTTTGTTAA
GCAGCATCTTTTGTCATNtacccgattttccgattttttctaGGTATAAA
AGGTAGTAAATGGGgagtatggggtggttttgttttttttccaggTACTA
CCCAGTAGTAAATAGGGgatatggggtggttttgggattttttatgtagt
atggtgtacttcaggggtgggtgggtgtcaagttttgaaaaataccttgt
agtacacatacatgccgccttctagtacactgaccccccctggATAAAAT
GACgtactttttatattttaacaacttttttccaCATTATTTTTTTGAAG
CATTTCTTCGAAGAAGGTGCCTTTCTcgaaggaattttataacattttat
ggcagattaaaaagacaatcagAAAACAAAggcttcttcatttttcatta
attttgcaTTTATGGGGAAGAAGGCGCTGTAGTATAGTGGTCATTAACTG
CACAGgtgactgaggttcgattcccactctcagcagttcacttggcaagt
gaatcgcgattccccatggttgcgaaatggtggctatgggtaattatatt
tgttcttttgctattttcttttgttctatgtgacgtaaagacgcttcaca
aatcgaagtacttccactaactgaaGGAAAATTGAGCTTTAACAAAATTC
ATGTCCACAGGCCTTGAGACCCTCAACCcccaaaataaagaattttgata
acttttgaaatatttggctTTAAATTTTGCAATTGTGCACAAAATATGAA
TTGGCATCTTTTGTTAAGCAGCATCTTTTGTCATAACCAGGCTCATGATG
TCATCATTCTTTgaagaaaatgctaaaaataggaccccttctaacttttt
tcattttgatttttttttgctccaACTTTGTCTCACACACATGTTTTTTG
GGTACAGGACCAATCTTTTGCAACCTGCTGGTGTTGCATTTCACAGACCA
GCCCAAAATAGCCTTTTTTGCCTAAATCTTNAAAATGACgtactttttat
attttaacaacttttttccaCATTATTTTTTTGAAGCATTTCTTCGAAGA
AGGTGCCTTTCTcgaaggaattttataacattttatggcagattaaaaag
acaatcagAAAACAAAggcttcttcatttttcattaattttgcaTTTATG
GGGAAGAAGGCGCTGTAGTATAGTGGTCATTAACTGCACAGgtgactgag
gttcgattcccactctcagcagttcacttggcaagtgaatcgcgattccc
catggttgcgaaatggtggctatgggtaattatatttgttcttttgctat
tttcttttgttctatgtgaagtaaagacgcttcacaaatcgaagtacttc
cactaactgaaGGAAAATTGAGCTTTAACAAAATTCATGTCCACAGGCCT
TGAGACCCTCAACCcccaaaataaagaattttgataacttttgaaatatt
tggctTTAAATTTTGCAATTGTGCACAAAATATGAATTGGCATCTTTTGT
TAAGCAGCATCTTTTGTCATAACCAGGCTCATGATGTCATCATTCTTTga
agaaaatgctaaaaataggaccccttctaacttttttcattttgattttt
ttttgctcaaactTTGTCTCACACACATGTTTTTTGGGTACAGGACCAAT
CTTTTGCAACCTGCTGGTGTTGCATTTCACAGACCAGCCCAAAATAGCCT
TTTTTGCCTAAATCTTATTTTAGAGTTTGGAAAGTACTCTTAAATTTAAC
AAGTGTCAGGTATTGATAATACAAGCTTGCAGccaaatttttagcaaaat
tagATGAGCAgttatgctgaaagtgagcatCTTAAGTAAGAAACAGACCA
ATCTGTAAAATATGAATCACGCACATGACCATAATAAGGATTTAGCATGC
TGCTTCAGATGTTCAATATCTACCACTGCTTAAAAGTCAAAAGTTTTTGT
ATATAGTTCCTTAGTTCTGACAGGGGATTTGTCATTCAGTGTTCAATTGT
AGGCGCTGTGGTTCGATTCTCACTCacagcagttcacttggcaagtgaat
gaaccttcgcccgggtcaacccatgccatgtaaggggaattgggtagtca
gttcaaggtgctgacggggcactaattgaaagcgtctatattTGCGAAAA
TGGGCCTTAAATTCCTCCtgcgactcaaccaaatagaaatagaaatagaa
atctcAGCCAAATTTAcattccggtctgtaaaataccaatcaGGCAGTTT
TGCAAATTATCTCCAATTATCCAAGTCTACCATTGGTTAAGATTTAAAAT
TCATAGCACAAAATCAATCTTGAGACTTCACGGTGACTTGAGTGCTCTCC
CCCTtgcatagcgtcagccccccttACTGGTTGGGGGAGTTACAacctaa
atttttcccaaaaaagggctggaagtacaccacttttttggggggactTA
TATGTACTTGgagagctaaaatctcatcacctAACGTTGGGGCTAAAATA
TTTCAGCTTAATAGTtagcttcaattactcaaattgaagctcatgaatct
gaaaaattttcgcctgcgacgcaatatttttatagaaagtgtgcaaaatt
ttttatcttaaacttagaactgaacgcaatttacattggaaaaccctttt
ttactagatcaattttttgaaagtgtcaagggtcaaaagtccttggggct
aacaaaaaattcataaatctttgagggggacttaaaactcaggggggacc
taatttttgccttggacctaaacccaggccgACGCTATGCATTGGTTGGC
CCAAATAAGGAAAGATGCATGTGTAATTGAATtgcttttcattaaaataa
tttttattaggTTTTACAGAATTTTTCCTTACTTAGTCTTTTTTCTAGAC
TGGTTCAATTCTATGCAAAGCTGGATTTTTCTTGAAAGCTTTATTTTTGC
CATATTCTTGCGAAATTTACTCTtgggtgccaaataaacggggggggggt
tcgaataaacggggggaattcaaataaacggggggattggaaaattttcg
aaattttaataaacaggggtgacctaattgccgggggttggaaattgtac
ttctgaaaacccaaaaataaggtaaatacaggctttttggagcaaaataa
ggggacttttttgccaactgaaaatattcttacaaattaataaacggggg
ggtcctaataaggtccgaggggctggaaaattttcgaaaattaacaagcg
aggggggcgtttatttggtaCCTAAGAGTACCAGAATTTTTGGCATTGtc
ctacaatttttttttgtcctaTTGAAATTGAACAAATGTAGGCTAATTTG
ATAGTTAATGATCACTTTTCATcaccaaaacaaagaaactAAAAGTTATC
TTGCAATATgttttctgtttaatttgattggCCGATTTTAACGATTTCAA
CCACTTTCTAAAAgtatatttttcattcattttttaaaaacaaaactttt
gagTGATgaatttactttttattttagaaaaatgaataATTATATTGGTC
TGCAGAGTGAATACCAACAACAGTTCATTGGTGATAGCGATGGgactttt
cgagaaaattatCGAAACATGTTACGAGAACGAAGCCGAAGAATATCTGT
TGAAAGAAGTCATACACCGTTCACATGGTTTGATATTAATCAAAATGTCA
GAGAAGACAAAAACGCTAGTATTATAATAGACGATTCAATTATTGCAAGG
TCGAAATCTGCTGTACCGGTTGTAGAGAAATATAAATCACAGTCCACTTC
ACCTATGTCAACATCGTCTCACTCTTCAGACGATGAAGAAAGTTATAAAG
AGAACATGTTTCAAAGAAGCCAAAGTGTTCAAACAAATTTTGATATGGAA
AAACATGATATTGAAGTACAAACTCCTGTTCGACATCGTCCTTGGTTAAA
ACCAAAGGCATCAGTTCGAAAAAAGTCTGCTACTAAACGCCCTATTGATA
AAAAGTCTGCATTTGTTCATGAAAGACCTTTAATAGCTTATGGGCGAGGT
GATAAATCCTCTTTAGTCAACAAGAAAACATACAATGTTAAAGCACCTTT
GACTAGTGTCAAACCAACTGCTTTTTTAGCTGCAAAGCGTAGAGATGAGC
ACCTCCGAAAGACAACAACAAAGAAAGAAAGGGCAtcacaagaaaaattg
aaaactcaAGCTCTTATCGAGTCCTTAACAGGCTTTGAACAATGGCAAAC
TGTTTACCAGAAAGAATTTTGTAGATGAATTGATTGATTATTATTTTTG Coding sequence (CDS) from alignment at sc0000351:64665..72213+ >TCONS_00020280 ID=TCONS_00020280|Name=TCONS_00020280|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000351:64665..72213+ (Clytia hemisphaerica)
atgaataATTATATTGGTCTGCAGAGTGAATACCAACAACAGTTCATTGG
TGATAGCGATGGgacttttcgagaaaattatCGAAACATGTTACGAGAAC
GAAGCCGAAGAATATCTGTTGAAAGAAGTCATACACCGTTCACATGGTTT
GATATTAATCAAAATGTCAGAGAAGACAAAAACGCTAGTATTATAATAGA
CGATTCAATTATTGCAAGGTCGAAATCTGCTGTACCGGTTGTAGAGAAAT
ATAAATCACAGTCCACTTCACCTATGTCAACATCGTCTCACTCTTCAGAC
GATGAAGAAAGTTATAAAGAGAACATGTTTCAAAGAAGCCAAAGTGTTCA
AACAAATTTTGATATGGAAAAACATGATATTGAAGTACAAACTCCTGTTC
GACATCGTCCTTGGTTAAAACCAAAGGCATCAGTTCGAAAAAAGTCTGCT
ACTAAACGCCCTATTGATAAAAAGTCTGCATTTGTTCATGAAAGACCTTT
AATAGCTTATGGGCGAGGTGATAAATCCTCTTTAGTCAACAAGAAAACAT
ACAATGTTAAAGCACCTTTGACTAGTGTCAAACCAACTGCTTTTTTAGCT
GCAAAGCGTAGAGATGAGCACCTCCGAAAGACAACAACAAAGAAAGAAAG
GGCAtcacaagaaaaattgaaaactcaAGCTCTTATCGAGTCCTTAACAG
GCTTTGAACAATGGCAAACTGTTTACCAGAAAGAATTTTGTAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020280-exon-sc0000351-1491911889:64665..64885 | TCONS_00020280-exon-sc0000351-1491911889:64665..64885 | Clytia hemisphaerica | exon |
| TCONS_00020280-exon-sc0000351-1510915933:64665..64885 | TCONS_00020280-exon-sc0000351-1510915933:64665..64885 | Clytia hemisphaerica | exon |
| TCONS_00020280-exon-sc0000351-1575043694:64665..64885 | TCONS_00020280-exon-sc0000351-1575043694:64665..64885 | Clytia hemisphaerica | exon |
| TCONS_00020280-exon-sc0000351-1491911889:71442..72213 | TCONS_00020280-exon-sc0000351-1491911889:71442..72213 | Clytia hemisphaerica | exon |
| TCONS_00020280-exon-sc0000351-1510915933:71442..72213 | TCONS_00020280-exon-sc0000351-1510915933:71442..72213 | Clytia hemisphaerica | exon |
| TCONS_00020280-exon-sc0000351-1575043694:71442..72213 | TCONS_00020280-exon-sc0000351-1575043694:71442..72213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000351 | supercontig | sc0000351:64665..72213 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029774 | CSAP |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005856 | cytoskeleton |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005856 |
cytoskeleton |
Blast
The following BLAST results are available for this feature:
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