TCONS_00020303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020303
Unique NameTCONS_00020303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020303 ID=TCONS_00020303|Name=TCONS_00020303|organism=Clytia hemisphaerica|type=transcript|length=2911bp
cttcataactcgaacccaTACCGGGAAcagaaatttgttcgagttatagg
gATTCGAgctaaagagactccactgtagaTTACAAGCATTTTCTCGTTTA
ATTTGTAGATGTCaagaataaaatacaaaaatttcatTCTAAGTGTTGTC
TCATTATTTTTGGTTGCTGCATTCATTTTTTCAGGAGGTGATTTTCATCC
AAAGATAAAGTTGCAGAGAATCGAAATCGTCTCCAGAGAAAGACGATATT
CGTTTCGAAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATTG
GAAAAGGACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAGA
AGATGACGAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTACG
TAACACAGAAAACGTGCACTCCACAACAAAACATCATATTTCTGAAGACG
CATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATATGCTGA
CATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCGTTTTG
ATTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGCTTGGA
CCAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGATTCAGCAAAGA
ATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCATCACAATCTTAC
GAAACCCGGTCACTCAATTTGATAGTCTATTTCACTATGAAGGTTTTGAC
AAACTTTTATCCATCCAACGAAAATATCGTGCCATGGATATCTTCTTATC
TTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGAGAGAAACACCTG
AAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGATCTTGGTTTCACC
TTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCGTGTTGGAAAAGC
GATTCAAGAGATAGACGAGACTTTTGATATGGTTTTATTGAtggattatt
ttgatgaaagttTAGTACTTTTAATGAACGAACTTTGTTGGGGATTTGAG
GATATTATCTATATGAAGCACAATGTAAGAGCGAAGCGGAAAAACGTTTC
CACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTGCAGACTGGGAAC
TTTATAAGCATTTCAACAAAACATTTTggaataaaattcaaaagtacGGG
TCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGAGAGAAATAATGA
ACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACATTACCCCCCTTTT
CAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGACAAGAATACCAA
TCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATATTTACAGAGGTT
TCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAAAGAACGATAGTA
GCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAACCTGGTACCGGAA
TTCTAATGGTTGGTATCTGGCGAGGAAGAGAACTACTGATGTCTTTTACA
AAGGAAAATAACCACAAGACCAAAAAATGAACGCTGAATTTAACTAATAA
TCGAGTCAGTCTTTTTCTCGAACACCAAGGGGGACCAGTAATCGAGGAGG
CTCAATTTACATATCAAAACATATTTAGTCGAATGTACATGGTgtccaaa
aaaaaagtcatatcAGAAAAGATACAAAAGTAAAAATACGCAATAATAAA
AAGCACACGAAATGTCTCTATCTACTCAaagagatttttcatttttttcc
agacACCCTGTActacaaataaattattttattcaaaacACTGGACCGGT
TGAGTTTCATATTATGAATTGAGAAGAAGTAATTGACgtcatttcatttt
atattatcCATACAGGAGGatgggggtggacgaacatttgcAGAGGGTAA
TCCGAGAGAGATTTCCAGgaggtgttttttcatttttccaaggggcccgg
ggggggggggactaggtttgcgaggggacgggtatgtccgagccgaaaat
cgaaaatcgaccctttgagagacaaaattttggtgattttgggacccttt
gagagactttttcctaaattttggtccattttttccaaattttggtttga
ttttcaccaaattttcacctattcttggaaatcgtgaccctttgagagag
aaattttttatttttgtgattttgggaccctttcagagactaacttttga
atttgtacccctttgagagacttttgAGGAATGAGAAAAGGTACCCTTAT
GGCTCGCACATACCCGGCCCCCATTTTGCCTAAGTTcccccccccccggg
ggtaaagagttattctaaaatttccaggggataaaagactgattttagtt
cgtccaccctcactttaaggtatgaaaagaactTTTCCAAGGGTGCTTTT
GGAAATTTTACCACTTTCCAGCAGGTATCTACACATTTTGAATAATTCTt
aattttgacttgaaaaggttcgtctaccccctgtatggttttttaatgga
acagcccaatgctGAATGGGAGAAAGAAAATCCTatagaaataagaaaaa
tacTCTTACCAGTTTAACTGCAGTGCTGATCATCAAAATTAGACGAAGCA
TATAACAAGTTACCAATCAGTTGAAGTTTCTTTCCTTGCAACGATTTTCT
TTCATGTTTTCTCGAAGTATCCAGGTAGTGGCcaggtttttattttttaa
ttcattgTCTAGAGAAAATGAAgtaaatattatcaaaaaaaatgatataa
tcaTTATAACGAATCTTATTTTTATCACTGTATAcagaatattttatttt
tttaatcaaggTATAGGCAatcttattttgacttttagattgtataatat
ttattttagaa
Run BLAST on NCBI

protein sequence of TCONS_00020303-protein

>TCONS_00020303-protein ID=TCONS_00020303-protein|Name=TCONS_00020303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MSRIKYKNFILSVVSLFLVAAFIFSGGDFHPKIKLQRIEIVSRERRYSFR
RENATSVSNSIKLLEKDFQDRFQQLVENLQEDDESYKSLLKTTLDDYVTQ
KTCTPQQNIIFLKTHKTGSSTLTNILNRYADINNLRMLIPSGKQNRFDWP
NKFTPFSADVRLLGPETKANMLVNHARFSKESMQQMISKPTKFITILRNP
VTQFDSLFHYEGFDKLLSIQRKYRAMDIFLSSPKHYYQRLLRKRETPEAL
PLLRNSMLYDLGFTFHERPRGDDSDARVGKAIQEIDETFDMVLLMDYFDE
SLVLLMNELCWGFEDIIYMKHNVRAKRKNVSTKTADRIRKWNSADWELYK
HFNKTFWNKIQKYGSAKFAKDLREFRERNNELVKNCQIKSEDTLPPFSTV
KQYKLGGNVRQEYQSLCEKILLSEVEYLQRFRDQYELEFKKSSKNDSSRV
QREILSRMQNLVPEF
Run BLAST on NCBI

transcript from alignment at sc0000351:179544..185347-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020303 ID=TCONS_00020303|Name=TCONS_00020303|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at sc0000351:179544..185347- (Clytia hemisphaerica)
CTTCATAACTCGAACCCATACCGGGAACAGAAATTTGTTCGAGTTATAGG
GATTCGAGCTAAAGAGACTCCACTGTAGATTACAAGCATTTTCTCGTTTA
ATTTGTAGATGTCAAGAATAAAATACAAAAATTTCATTCTAAGTGTTGTC
TCATTATTTTTGGTTGCTGCATTCATTTTTTCAGGTGAGTCAGGTGAGCT
AACTCTTCGTAAAAAAACCACTAAGAATGACTAGTCACGGCTATAGGCTG
CACGCATCCCCTCTTAATATGTTTTGATATAAGAGATGCATATCGTGTAT
TAAATAGTCGTCTAAGAGTTACCCTAGTCTGTAGACAAACCCGATATCTA
CGGCTTATTTCAAAATTCATTGCCGTAGAGGGTATGTTGTCATTGTCTTT
TCTGATTTGAGATTTTTCAAACCGTCGGTAACGTTTCGTTATTTGTTCGT
TATTATCAACTCTTTTGCTAAAGTCTGTCCAGATATAATTGGCAGTGGAA
ACAAGAATGCCTGTAACTTTTAATAGCCAAATACAATTCCGAAATTTTTT
TAGCTTGTTTTAGAGAATCAAAAGCGCTATATTTGAATGCATTTATGGTT
GAAAAATTCGCGATTTTTAGCGGTTAAATTTGCGATTGCAAAAATTGAGC
TTTTTTTCTACTCATGCTATAACTTTCATTTTTACACCAGTGGTAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA
ATAATACCAATGCACCAACACTTAACATTTTCCAACTTTTAATTGCACTG
TTCAAAAATAAAAACATAACCCCCGTTTTTAGTAATATGTTGGAGATATA
TTTCACAGAAAAGTGCTACCAAGGGGTATTTCAGGTCCCATATCTTCCGA
AGGAATTTTCTGTTTGCTTAGAAATTTGACAACCTTCTTTACCTAAAGCT
GATTTACCACTGGTGTAAAAATGAAAGTCAAGCATGAGTAGAAAAAAAGC
ATAATTTTTACAACCGCAAATTTAACCGCTAAAAATCGCGAATTTTTCAA
CCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAACAAGCAAAAAAAATTTCCATAATTATATTTGACTAT
CAAAAGTTACAAGCATTCTTGTTTCCACTGCCAATTATATCTGGACAGAC
TTTAGTATTTCATGTAATGACGTTTTGATTTAAGGAGGTGATTTTCATCC
AAAGATAAAGTTGCAGAGAATCGAAATCGTCTCCAGAGAAAGGTTAGTAA
GAGAATCTCCAAAGCGTAGCTATTTGGTAAAGTTTAAGAATCACTCATTA
AGTGCCACTGGCACCATTATGAGATTACTTATTTTTTCCGGTCATGTACC
GACAGGTTTGGGTCACGACCCACGACACCCTGTTTTTTTACCCTGCCCGA
ATAAGTCGAGATCGGCATTTCTTAGTTCGGGTGAATTTGAAATTTGAAAT
GGAAAAACTGATAACATTGAGATTCTAACATACACAATATTAATCTGATT
CACTTGGAGTTAAAACTCTTCACAAATATCAAGCCCATATATGATACAAT
ACCAGTAACACGAGGCAATACAATATGTAACAATTTGAACTTTGTTTTTC
AGACGATATTCGTTTCGAAGGGAGAACGCAACATCAGTTTCCAATTCAAT
CAAATTATTGGAAAAGGACTTTCAAGACAGATTTCAACAGTTGGTGGAAA
ACTTACAAGAAGATGACGAGAGCTATAAGTCATTGCTCAAAACCACACTC
GATGATTACGTAACACAGAAAACGTAAGCACACTGTAAACATGTTCAAAT
CTACGGTTTTGTATTGGTCCGAAAACCGACTAATGGAGCTATCCTATTGG
TTAGAAATGACGTTAGTTTAAAAATAAGCCAATAGAATCGTCTCATTTCG
TTTCAATGCGGTAAATAAAACCAGACGTAACGTATGGATACGGTCTGAAT
AAAGCTTGTCGGTCAAAACTGCCTCAGTTCAACGTCTAGTTCAATTTGTA
TTATCCAAACTACTCTCCAGAGTCAATATATCAGACTTTGAACCGATTTG
AACAACTAAAAACTTTGTACTGTAAATATTTTCTTGAAAGGAACCAAAAC
GAATTGCCGTTTAGAAGCTAAATGACGACTTTTTTGAAATGTTGCCTAGT
AGTGAAAAGTATTGGAATAATTTGGTCGTGTAGAGTTCAGATTTCGATCT
AAACCATTGAAGGCAATTCTCTGGTATCAAATGTAATTATTTTCAAACAA
AATTATTCTACTTTTTATAGGTGCACTCCACAACAAAACATCATATTTCT
GAAGACGCATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGAT
ATGCTGACATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAAC
CGTTTTGATTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACT
GCTTGGACCAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGGTATT
GAATAGGCAAAGAAATACTTAGCCAATAATTTTGCGTTTTCAGGAAACAC
CCGTCTCACAATATATATTACCAACAATGATTCTCGATTTTTAAAGGTCC
TAACCGTCTTGATATTTACAATTCCGTTAGTAAAATGAGATTGAAAATCT
AGGGTGATCCAAAAAATGAGAAGCAAAAAAATCCAACGGAGTCCTGAAAA
ATGTGAAAAAATCAAGGAATCACCTTTCCCAAAATAGACCTCCTCAACAT
AGGAGGTACAACTTTTTTCTGAAATAGTTCAATACCGGTCAGCGATATGC
TAAGACCTGAGACACCCAAATTTAAGTCATTCAATATGAAATTGCATTAT
TTGACATCCCAAATATTTATTGCATTTTTAGATTCAGCAAAGAATCCATG
CAACAAATGATTTCAAAGCCAACCAAATTCATCACAATCTTACGAAACCC
GGTCACTCAATTTGATAGTCTATTTCACTATGAAGGTTTTGACAAACTTT
TATCCATCCAACGAAAATATCGTGCCATGGATATCTTCTTATCTTCGCCG
AAACATTATTATCAGAGGTTACTGCGTAAGAGAGAAACACCTGAAGCTTT
ACCTCTTCTACGAAACAGCATGCTCTACGATCTTGGTTTCACCTTTCATG
AGCGGCCACGCGGTGATGATTCGGACGCGCGTGTTGGAAAAGCGATTCAA
GAGATAGACGAGACTTTTGATATGGTTTTATTGATGGATTATTTTGATGA
AAGTTTAGTACTTTTAATGAACGAACTTTGTTGGGGATTTGAGGATATTA
TCTATATGAAGCACAATGTAAGAGCGAAGCGGAAAAACGTTTCCACTAAA
ACCGCTGACAGAATTCGAAAATGGAATTCTGCAGACTGGGAACTTTATAA
GCATTTCAACAAAACATTTTGGAATAAAATTCAAAAGTACGGGTCTGCAA
AGTTCGCAAAAGACTTACGAGAATTTCGCGAGAGAAATAATGAACTTGTT
AAGAATTGTCAAATTAAAAGTGAGGATACATTACCCCCCTTTTCAACAGT
GAAACAGTATAAATTAGGGGGCAATGTTAGACAAGAATACCAATCACTAT
GTGAGAAAATACTTTTATCAGAAGTTGAATATTTACAGAGGTTTCGTGAC
CAATATGAACTTGAATTTAAGAAGAGTTCAAAGAACGATAGTAGCCGCGT
GCAACGAGAAATACTATCGAGAATGCAAAACCTGGTACCGGAATTCTAAT
GGTTGGTATCTGGCGAGGAAGAGAACTACTGATGTCTTTTACAAAGGAAA
ATAACCACAAGACCAAAAAATGAACGCTGAATTTAACTAATAATCGAGTC
AGTCTTTTTCTCGAACACCAAGGGGGACCAGTAATCGAGGAGGCTCAATT
TACATATCAAAACATATTTAGTCGAATGTACATGGTGTCCAAAAAAAAAG
TCATATCAGAAAAGATACAAAAGTAAAAATACGCAATAATAAAAAGCACA
CGAAATGTCTCTATCTACTCAAAGAGATTTTTCATTTTTTTCCAGACACC
CTGTACTACAAATAAATTATTTTATTCAAAACACTGGACCGGTTGAGTTT
CATATTATGAATTGAGAAGAAGTAATTGACGTCATTTCATTTTATATTAT
CCATACAGGAGGATGGGGGTGGACGAACATTTGCAGAGGGTAATCCGAGA
GAGATTTCCAGGAGGTGTTTTTTCATTTTTCCAAGGGGCCCGGGGGGGGG
GGGACTAGGTTTGCGAGGGGACGGGTATGTCCGAGCCGAAAATCGAAAAT
CGACCCTTTGAGAGACAAAATTTTGGTGATTTTGGGACCCTTTGAGAGAC
TTTTTCCTAAATTTTGGTCCATTTTTTCCAAATTTTGGTTTGATTTTCAC
CAAATTTTCACCTATTCTTGGAAATCGTGACCCTTTGAGAGAGAAATTTT
TTATTTTTGTGATTTTGGGACCCTTTCAGAGACTAACTTTTGAATTTGTA
CCCCTTTGAGAGACTTTTGAGGAATGAGAAAAGGTACCCTTATGGCTCGC
ACATACCCGGCCCCCATTTTGCCTAAGTTCCCCCCCCCCCGGGGGTAAAG
AGTTATTCTAAAATTTCCAGGGGATAAAAGACTGATTTTAGTTCGTCCAC
CCTCACTTTAAGGTATGAAAAGAACTTTTCCAAGGGTGCTTTTGGAAATT
TTACCACTTTCCAGCAGGTATCTACACATTTTGAATAATTCTTAATTTTG
ACTTGAAAAGGTTCGTCTACCCCCTGTATGGTTTTTTAATGGAACAGCCC
AATGCTGAATGGGAGAAAGAAAATCCTATAGAAATAAGAAAAATACTCTT
ACCAGTTTAACTGCAGTGCTGATCATCAAAATTAGACGAAGCATATAACA
AGTTACCAATCAGTTGAAGTTTCTTTCCTTGCAACGATTTTCTTTCATGT
TTTCTCGAAGTATCCAGGTAGTGGCCAGGTTTTTATTTTTTAATTCATTG
TCTAGAGAAAATGAAGTAAATATTATCAAAAAAAATGATATAATCATTAT
AACGAATCTTATTTTTATCACTGTATACAGAATATTTTATTTTTTTAATC
AAGGTATAGGCAATCTTATTTTGACTTTTAGATTGTATAATATTTATTTT
AGAA

Coding sequence (CDS) from alignment at sc0000351:179544..185347-

>TCONS_00020303 ID=TCONS_00020303|Name=TCONS_00020303|organism=Clytia hemisphaerica|type=CDS|length=6990bp|location=Sequence derived from alignment at sc0000351:179544..185347- (Clytia hemisphaerica)
ATTCAGCAAAGAATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCA
TCACAATCTTACGAAACCCGGTCACTCAATTTGATAGTCTATTTCACTAT
GAAGGTTTTGACAAACTTTTATCCATCCAACGAAAATATCGTGCCATGGA
TATCTTCTTATCTTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGA
GAGAAACACCTGAAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGAT
CTTGGTTTCACCTTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCG
TGTTGGAAAAGCGATTCAAGAGATAGACGAGACTTTTGATATGGTTTTAT
TGATGGATTATTTTGATGAAAGTTTAGTACTTTTAATGAACGAACTTTGT
TGGGGATTTGAGGATATTATCTATATGAAGCACAATGTAAGAGCGAAGCG
GAAAAACGTTTCCACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTG
CAGACTGGGAACTTTATAAGCATTTCAACAAAACATTTTGGAATAAAATT
CAAAAGTACGGGTCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGA
GAGAAATAATGAACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACAT
TACCCCCCTTTTCAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGA
CAAGAATACCAATCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATA
TTTACAGAGGTTTCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAA
AGAACGATAGTAGCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAAC
CTGGTACCGGAATTCTAAGTGCACTCCACAACAAAACATCATATTTCTGA
AGACGCATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATAT
GCTGACATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCG
TTTTGATTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGC
TTGGACCAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGACGATAT
TCGTTTCGAAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATT
GGAAAAGGACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAG
AAGATGACGAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTAC
GTAACACAGAAAACGAGGTGATTTTCATCCAAAGATAAAGTTGCAGAGAA
TCGAAATCGTCTCCAGAGAAAGATGTCAAGAATAAAATACAAAAATTTCA
TTCTAAGTGTTGTCTCATTATTTTTGGTTGCTGCATTCATTTTTTCAGAT
TCAGCAAAGAATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCATC
ACAATCTTACGAAACCCGGTCACTCAATTTGATAGTCTATTTCACTATGA
AGGTTTTGACAAACTTTTATCCATCCAACGAAAATATCGTGCCATGGATA
TCTTCTTATCTTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGAGA
GAAACACCTGAAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGATCT
TGGTTTCACCTTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCGTG
TTGGAAAAGCGATTCAAGAGATAGACGAGACTTTTGATATGGTTTTATTG
ATGGATTATTTTGATGAAAGTTTAGTACTTTTAATGAACGAACTTTGTTG
GGGATTTGAGGATATTATCTATATGAAGCACAATGTAAGAGCGAAGCGGA
AAAACGTTTCCACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTGCA
GACTGGGAACTTTATAAGCATTTCAACAAAACATTTTGGAATAAAATTCA
AAAGTACGGGTCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGAGA
GAAATAATGAACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACATTA
CCCCCCTTTTCAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGACA
AGAATACCAATCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATATT
TACAGAGGTTTCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAAAG
AACGATAGTAGCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAACCT
GGTACCGGAATTCTAAGTGCACTCCACAACAAAACATCATATTTCTGAAG
ACGCATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATATGC
TGACATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCGTT
TTGATTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGCTT
GGACCAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGACGATATTC
GTTTCGAAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATTGG
AAAAGGACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAGAA
GATGACGAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTACGT
AACACAGAAAACGAGGTGATTTTCATCCAAAGATAAAGTTGCAGAGAATC
GAAATCGTCTCCAGAGAAAGATGTCAAGAATAAAATACAAAAATTTCATT
CTAAGTGTTGTCTCATTATTTTTGGTTGCTGCATTCATTTTTTCAGATTC
AGCAAAGAATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCATCAC
AATCTTACGAAACCCGGTCACTCAATTTGATAGTCTATTTCACTATGAAG
GTTTTGACAAACTTTTATCCATCCAACGAAAATATCGTGCCATGGATATC
TTCTTATCTTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGAGAGA
AACACCTGAAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGATCTTG
GTTTCACCTTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCGTGTT
GGAAAAGCGATTCAAGAGATAGACGAGACTTTTGATATGGTTTTATTGAT
GGATTATTTTGATGAAAGTTTAGTACTTTTAATGAACGAACTTTGTTGGG
GATTTGAGGATATTATCTATATGAAGCACAATGTAAGAGCGAAGCGGAAA
AACGTTTCCACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTGCAGA
CTGGGAACTTTATAAGCATTTCAACAAAACATTTTGGAATAAAATTCAAA
AGTACGGGTCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGAGAGA
AATAATGAACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACATTACC
CCCCTTTTCAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGACAAG
AATACCAATCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATATTTA
CAGAGGTTTCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAAAGAA
CGATAGTAGCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAACCTGG
TACCGGAATTCTAAGTGCACTCCACAACAAAACATCATATTTCTGAAGAC
GCATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATATGCTG
ACATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCGTTTT
GATTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGCTTGG
ACCAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGACGATATTCGT
TTCGAAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATTGGAA
AAGGACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAGAAGA
TGACGAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTACGTAA
CACAGAAAACGAGGTGATTTTCATCCAAAGATAAAGTTGCAGAGAATCGA
AATCGTCTCCAGAGAAAGATGTCAAGAATAAAATACAAAAATTTCATTCT
AAGTGTTGTCTCATTATTTTTGGTTGCTGCATTCATTTTTTCAGATTCAG
CAAAGAATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCATCACAA
TCTTACGAAACCCGGTCACTCAATTTGATAGTCTATTTCACTATGAAGGT
TTTGACAAACTTTTATCCATCCAACGAAAATATCGTGCCATGGATATCTT
CTTATCTTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGAGAGAAA
CACCTGAAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGATCTTGGT
TTCACCTTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCGTGTTGG
AAAAGCGATTCAAGAGATAGACGAGACTTTTGATATGGTTTTATTGATGG
ATTATTTTGATGAAAGTTTAGTACTTTTAATGAACGAACTTTGTTGGGGA
TTTGAGGATATTATCTATATGAAGCACAATGTAAGAGCGAAGCGGAAAAA
CGTTTCCACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTGCAGACT
GGGAACTTTATAAGCATTTCAACAAAACATTTTGGAATAAAATTCAAAAG
TACGGGTCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGAGAGAAA
TAATGAACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACATTACCCC
CCTTTTCAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGACAAGAA
TACCAATCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATATTTACA
GAGGTTTCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAAAGAACG
ATAGTAGCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAACCTGGTA
CCGGAATTCTAAGTGCACTCCACAACAAAACATCATATTTCTGAAGACGC
ATAAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATATGCTGAC
ATCAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCGTTTTGA
TTGGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGCTTGGAC
CAGAGACAAAGGCTAATATGTTAGTCAACCATGCAAGACGATATTCGTTT
CGAAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATTGGAAAA
GGACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAGAAGATG
ACGAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTACGTAACA
CAGAAAACGAGGTGATTTTCATCCAAAGATAAAGTTGCAGAGAATCGAAA
TCGTCTCCAGAGAAAGATGTCAAGAATAAAATACAAAAATTTCATTCTAA
GTGTTGTCTCATTATTTTTGGTTGCTGCATTCATTTTTTCAGATTCAGCA
AAGAATCCATGCAACAAATGATTTCAAAGCCAACCAAATTCATCACAATC
TTACGAAACCCGGTCACTCAATTTGATAGTCTATTTCACTATGAAGGTTT
TGACAAACTTTTATCCATCCAACGAAAATATCGTGCCATGGATATCTTCT
TATCTTCGCCGAAACATTATTATCAGAGGTTACTGCGTAAGAGAGAAACA
CCTGAAGCTTTACCTCTTCTACGAAACAGCATGCTCTACGATCTTGGTTT
CACCTTTCATGAGCGGCCACGCGGTGATGATTCGGACGCGCGTGTTGGAA
AAGCGATTCAAGAGATAGACGAGACTTTTGATATGGTTTTATTGATGGAT
TATTTTGATGAAAGTTTAGTACTTTTAATGAACGAACTTTGTTGGGGATT
TGAGGATATTATCTATATGAAGCACAATGTAAGAGCGAAGCGGAAAAACG
TTTCCACTAAAACCGCTGACAGAATTCGAAAATGGAATTCTGCAGACTGG
GAACTTTATAAGCATTTCAACAAAACATTTTGGAATAAAATTCAAAAGTA
CGGGTCTGCAAAGTTCGCAAAAGACTTACGAGAATTTCGCGAGAGAAATA
ATGAACTTGTTAAGAATTGTCAAATTAAAAGTGAGGATACATTACCCCCC
TTTTCAACAGTGAAACAGTATAAATTAGGGGGCAATGTTAGACAAGAATA
CCAATCACTATGTGAGAAAATACTTTTATCAGAAGTTGAATATTTACAGA
GGTTTCGTGACCAATATGAACTTGAATTTAAGAAGAGTTCAAAGAACGAT
AGTAGCCGCGTGCAACGAGAAATACTATCGAGAATGCAAAACCTGGTACC
GGAATTCTAAGTGCACTCCACAACAAAACATCATATTTCTGAAGACGCAT
AAAACCGGTAGCAGCACTTTAACCAATATTTTGAACAGATATGCTGACAT
CAACAACTTGAGAATGTTAATACCATCAGGGAAGCAAAACCGTTTTGATT
GGCCAAATAAGTTCACACCCTTTAGTGCAGATGTAAGACTGCTTGGACCA
GAGACAAAGGCTAATATGTTAGTCAACCATGCAAGACGATATTCGTTTCG
AAGGGAGAACGCAACATCAGTTTCCAATTCAATCAAATTATTGGAAAAGG
ACTTTCAAGACAGATTTCAACAGTTGGTGGAAAACTTACAAGAAGATGAC
GAGAGCTATAAGTCATTGCTCAAAACCACACTCGATGATTACGTAACACA
GAAAACGAGGTGATTTTCATCCAAAGATAAAGTTGCAGAGAATCGAAATC
GTCTCCAGAGAAAGATGTCAAGAATAAAATACAAAAATTTCATTCTAAGT
GTTGTCTCATTATTTTTGGTTGCTGCATTCATTTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011396XLOC_011396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020303-exon-sc0000351-1575043694:185164..185347TCONS_00020303-exon-sc0000351-1575043694:185164..185347Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1575043694:183456..183513TCONS_00020303-exon-sc0000351-1575043694:183456..183513Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1575043694:182925..183095TCONS_00020303-exon-sc0000351-1575043694:182925..183095Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1575043694:182203..182427TCONS_00020303-exon-sc0000351-1575043694:182203..182427Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1575043694:179544..181816TCONS_00020303-exon-sc0000351-1575043694:179544..181816Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1510915933:185164..185347TCONS_00020303-exon-sc0000351-1510915933:185164..185347Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1510915933:183456..183513TCONS_00020303-exon-sc0000351-1510915933:183456..183513Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1510915933:182925..183095TCONS_00020303-exon-sc0000351-1510915933:182925..183095Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1510915933:182203..182427TCONS_00020303-exon-sc0000351-1510915933:182203..182427Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1510915933:179544..181816TCONS_00020303-exon-sc0000351-1510915933:179544..181816Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1491911889:185164..185347TCONS_00020303-exon-sc0000351-1491911889:185164..185347Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1491911889:183456..183513TCONS_00020303-exon-sc0000351-1491911889:183456..183513Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1491911889:182925..183095TCONS_00020303-exon-sc0000351-1491911889:182925..183095Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1491911889:182203..182427TCONS_00020303-exon-sc0000351-1491911889:182203..182427Clytia hemisphaericaexon
TCONS_00020303-exon-sc0000351-1491911889:179544..181816TCONS_00020303-exon-sc0000351-1491911889:179544..181816Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020303-proteinTCONS_00020303-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:179544..185347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	17.51	14.4242	5.17252	4.40223	1.23284	2.87435	1.11166	0.365381	1.58112	4.04178	0.207685	0.222878	5.35406	8.92592	0.777601	1.22055	3.00584	0.776193	0.419362	0.571891	1.96345	2.97896	0.501516	0.267616	3.85656	4.13603
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009729Gal-3-0_sulfotransfrase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0009247glycolipid biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0001733galactosylceramide sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009247 glycolipid biosynthetic process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0001733 galactosylceramide sulfotransferase activity
Blast
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BLAST of TCONS_00020303 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.320e-52
Identity = 121/348 (34.77%), Postives = 177/348 (50.86%), Query Frame = 1 
Query:  415 CTPQQNIIFLKTHKTGSSTLTNILNRYADINNLRMLIPSGKQNRFDWPNKFT-PFSADVRLLGPETKANMLVNHARFSKESMQQMISKPTKFITILRNPVTQFDSLFHYEGFDKLLSIQRKYRAMDI---FLSSPKHYYQRLLRKRETPEAL--PLLRNSMLYDLGFTFHERPRGDDSDARVGKAIQEIDETFDMVLLMDYFDESLVLLMNELCWGFEDIIYMKHNVR--AKRKNVSTKTADRIRKWNSADWELYKHFNKTFWNKIQKYGSAKFAKDLREFRERNNELVKNC----------QIKSEDTLP--PFST--VKQYKLGGNVRQEYQSLCEKILLSEVEYL 1392
            C P++NI+FLKTHKT SSTL NIL R+   + L+   P+G+ N FD+P  F      D R   P    N++ NH RF  + ++ ++     FIT+LR+P   F+S FHY  F  ++ +  K  A D    FL  P  YY         P       LRN + +DLG+        D S  +V + I E++  F +VLL +YFDESLVLL + LCW  ED++Y K N R  +    +S +   R   WN  D  LY+HFN +FW K++ +G  + A+++   R  N  +   C           I+ E   P  P  T  +  Y L  ++ Q +  LC ++L  E++YL
Sbjct:   72 CQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGR-NDFDYPTFFARSLVQDYR---PGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHY--FGPVVPLTWKLSAGDKLTEFLQDPDRYYD--------PNGFNAHYLRNLLFFDLGYDNSL----DPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAVDAAAIQDEAMQPWQPLGTKSILGYNLKKSIGQRHAQLCRRMLTPEIQYL 401
The following BLAST results are available for this feature:
BLAST of TCONS_00020303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G3ST13.320e-5234.77Galactosylceramide sulfotransferase OS=Homo sapien... [more]
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