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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020305 ID=TCONS_00020305|Name=TCONS_00020305|organism=Clytia hemisphaerica|type=transcript|length=1987bp
GAGAAGTTAAAAAATAgtaaagtaaaaatcaaaaagaaatctgaaaaata
aacCAACATCATAAAAAACTCTTTGGACAACTAAAAAAGATAGCGAAATT
ACAAAATAGGATGATAAATAAATTATAATTTCAATATGATTTTAGCTTAA
TAAGTCGACAAATAGTGATTTTTAATGGAATATTAAACTCTTTGTCAatt
taaggttttgtttttactgaACTATCCCAAATTCATAAGGCACATCTATA
CAatgttttgaaatgatttttctGTTTGGATTGAAGAATTTTATTCTGAA
TTTGTTCAACATCCACCTTGTTATCTCATTGTTATCACGTACAATTTTCA
ATCCTTTATTTTTGTTGGACTTTGTATCTGAATCAATATGCAGATGGCTT
GGGATGCCAGTCAAAAATacagtttttataaataaaatctttactaggtg
ctaaaatttttaaaagagttTCATATAGGTGGAATGCAGTCCTTCCAACG
CCATGGGAACAGACGATGACAAACTCAGCTTTACAGGCATAAAAGTTAGA
GTGACTATCAAATTCCTGTAAATTCGGTATAAACTGTAGAATTGATCTCT
GGATTCTTTGGATAATTAGTTTTAGCATGTTTAGTTTGGAAATGATCACC
CTGTTAAATGGACTTAAGGATTCCAGGTGTTATCTATGGTTCAAGTTTGG
ATTTAGCTTAGTGCTTTGTGAGTTCTACAGTGGGCCGGTGTTGAAGGTTG
CTGAAGACATTGAAGCATGAATCTGAATGATAGCAAAATTGAGGGTTCAG
AGTATTCCagaactttcatttttttaggCGAGCCCcgtgaaaaaaattct
gatttCACATAGTTACCAAGTGTCCCCCATCCTGCGGGACATGCATGCAA
ATCCACCTTCTGTCCCGCTTTACGCCCGCATCCTCTCTGTGTCCcgcatt
ttcaaaaatgacaaaatacaaCCAATAACACGAGGAAAATgattaatgat
aaaaaaagtaaaatattatatatgTTTTTGCAATTTCCcatcaaatgttg
aaaatttgtcTTAGCCCCAGCCCAATTTTGCGCTCGTTTTGTTCGCTCGC
ATCTGATCCCGCATTTGGAATTTTGAAACttggtaccgtcaactgctcta
gctTGGGaagattggtcgaaacatgggactgtcgACATCTGGCCTGTAGT
TTCTCTTACTGTTAATtctttttgacaacaaatttgttttgataactcca
ccaagtttatcaatcatatatACTTtatgtcataacatgtcacaataact
tttactgatatagcgcgcccttttaaacttttttgttttcattcaaaatg
gccggacgccgattggagaatcggacagtcaagaacaagtgcaaattagg
ataccttCGACAATCTCTCCTACTTAGGAAAGTATCTTAAATTGGACNAA
ATTAGGATACCTTCGACAATCTCTCCTACCTAGGAAAGTATCTTAAATTG
GACacaaaaaagtatccaaaatagcaatcaacatcctaattaggataCTA
AAAACTGCATTTTCACCAACCAGTGACATCCGTGCCATCTTACCACTTCC
AAGATGTAAATGAGAAAGCAAATGAGATTGTAATACTGAATTTCATTGAG
TTTGACTGGCGGAATACAAAACTATAGCCTAAAACACCACtcaaatgtga
aaaaataaaaagcgaAAATCGGACAGTAGCGGGCCGttctgtaaaaagaa
aaacaaatctttagctCAAGTTCGCAAAATTTTAGGCTCTGAACGGCAGA
TTATTAAGGATGTTAATTTTTGAGGAACCCACCAgagaaattacttgaaa
ttttggttagTGGTGCAATAATCTCGATGAAGAAAAGGTTTGCATAGTTT
TCCAAACGCAGATCGAGGCAGTAACCTCAAAAATTCAGGTCAAAGTGTCT
GCTCTCCTATTTAGGATACCTAAATCTCCAAATTAAG Run BLAST on NCBI transcript from alignment at sc0000351:201683..203740- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020305 ID=TCONS_00020305|Name=TCONS_00020305|organism=Clytia hemisphaerica|type=transcript|length=2058bp|location=Sequence derived from alignment at sc0000351:201683..203740- (Clytia hemisphaerica)
GAGAAGTTAAAAAATAGTAAAGTAAAAATCAAAAAGAAATCTGAAAAATA
AACCAACATCATAAAAAACTCTTTGGACAACTAAAAAAGATAGCGAAATT
ACAAAATAGGATGATAAATAAATTATAATTTCAATATGATTTTAGCTTAA
TAAGTCGACAAATAGTGATTTTTAATGGAATATTAAACTCTTTGTCAATT
TAAGGTTTTGTTTTTACTGAACTATCCCAAATTCATAAGGCACATCTATA
CAATGTTTTGAAATGATTTTTCTGTTTGGATTGAAGAATTTTATTCTGAA
TTTGTTCAACATCCACCTTGTTATCTCATTGTTATCACGTACAATTTTCA
ATCCTTTATTTTTGTTGGACTTTGTATCTGAATCAATATGCAGATGGCTT
GGGATGCCAGTCAAAAATACAGTTTTTATAAATAAAATCTTTACTAGGTG
CTAAAATTTTTAAAAGAGTTTCATATAGGTGGAATGCAGTCCTTCCAACG
CCATGGGAACAGACGATGACAAACTCAGCTTTACAGGCATAAAAGTTAGA
GTGACTATCAAATTCCTGTAAATTCGGTATAAACTGTAGAATTGATCTCT
GGATTCTTTGGATAATTAGTTTTAGCATGTTTAGTTTGGAAATGATCACC
CTGTTAAATGGACTTAAGGATTCCAGGTGTTATCTATGGTTCAAGTTTGG
ATTTAGCTTAGTGCTTTGTGAGTTCTACAGTGGGCCGGTGTTGAAGGTTG
CTGANTATGGTTCAAGTTTGGATTTAGCTTAGTGCTTTGTGAGTTCTACA
GTGGGCAGGTGTTGAAGGTTGCTGAAGACATTGAAGCATGAATCTGAATG
ATAGCAAAATTGAGGGTTCAGAGTATTCCAGAACTTTCATTTTTTTAGGC
GAGCCCCGTGAAAAAAATTCTGATTTCACATAGTTACCAAGTGTCCCCCA
TCCTGCGGGACATGCATGCAAATCCACCTTCTGTCCCGCTTTACGCCCGC
ATCCTCTCTGTGTCCCGCATTTTCAAAAATGACAAAATACAACCAATAAC
ACGAGGAAAATGATTAATGATAAAAAAAGTAAAATATTATATATGTTTTT
GCAATTTCCCATCAAATGTTGAAAATTTGTCTTAGCCCCAGCCCAATTTT
GCGCTCGTTTTGTTCGCTCGCATCTGATCCCGCATTTGGAATTTTGAAAC
TTGGTACCGTCAACTGCTCTAGCTTGGGAAGATTGGTCGAAACATGGGAC
TGTCGACATCTGGCCTGTAGTTTCTCTTACTGTTAATTCTTTTTGACAAC
AAATTTGTTTTGATAACTCCACCAAGTTTATCAATCATATATACTTTATG
TCATAACATGTCACAATAACTTTTACTGATATAGCGCGCCCTTTTAAACT
TTTTTGTTTTCATTCAAAATGGCCGGACGCCGATTGGAGAATCGGACAGT
CAAGAACAAGTGCAAATTAGGATACCTTCGACAATCTCTCCTACTTAGGA
AAGTATCTTAAATTGGACNAAATTAGGATACCTTCGACAATCTCTCCTAC
CTAGGAAAGTATCTTAAATTGGACACAAAAAAGTATCCAAAATAGCAATC
AACATCCTAATTAGGATACTAAAAACTGCATTTTCACCAACCAGTGACAT
CCGTGCCATCTTACCACTTCCAAGATGTAAATGAGAAAGCAAATGAGATT
GTAATACTGAATTTCATTGAGTTTGACTGGCGGAATACAAAACTATAGCC
TAAAACACCACTCAAATGTGAAAAAATAAAAAGCGAAAATCGGACAGTAG
CGGGCCGTTCTGTAAAAAGAAAAACAAATCTTTAGCTCAAGTTCGCAAAA
TTTTAGGCTCTGAACGGCAGATTATTAAGGATGTTAATTTTTGAGGAACC
CACCAGAGAAATTACTTGAAATTTTGGTTAGTGGTGCAATAATCTCGATG
AAGAAAAGGTTTGCATAGTTTTCCAAACGCAGATCGAGGCAGTAACCTCA
AAAATTCAGGTCAAAGTGTCTGCTCTCCTATTTAGGATACCTAAATCTCC
AAATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020305-exon-sc0000351-1575043694:202995..203740 | TCONS_00020305-exon-sc0000351-1575043694:202995..203740 | Clytia hemisphaerica | exon |
| TCONS_00020305-exon-sc0000351-1575043694:201683..202923 | TCONS_00020305-exon-sc0000351-1575043694:201683..202923 | Clytia hemisphaerica | exon |
| TCONS_00020305-exon-sc0000351-1510915933:202995..203740 | TCONS_00020305-exon-sc0000351-1510915933:202995..203740 | Clytia hemisphaerica | exon |
| TCONS_00020305-exon-sc0000351-1510915933:201683..202923 | TCONS_00020305-exon-sc0000351-1510915933:201683..202923 | Clytia hemisphaerica | exon |
| TCONS_00020305-exon-sc0000351-1491911889:202995..203740 | TCONS_00020305-exon-sc0000351-1491911889:202995..203740 | Clytia hemisphaerica | exon |
| TCONS_00020305-exon-sc0000351-1491911889:201683..202923 | TCONS_00020305-exon-sc0000351-1491911889:201683..202923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000351 | supercontig | sc0000351:201683..203740 - |
Blast
The following BLAST results are available for this feature:
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