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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020309 ID=TCONS_00020309|Name=TCONS_00020309|organism=Clytia hemisphaerica|type=transcript|length=6196bpRun BLAST on NCBI protein sequence of TCONS_00020309-protein >TCONS_00020309-protein ID=TCONS_00020309-protein|Name=TCONS_00020309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1890bp CFIIHIISIVDFVRTSPPATTSIAAPLATTASIATTPPTATTPSLETTGARun BLAST on NCBI transcript from alignment at sc0000351:264835..287368- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020309 ID=TCONS_00020309|Name=TCONS_00020309|organism=Clytia hemisphaerica|type=transcript|length=22534bp|location=Sequence derived from alignment at sc0000351:264835..287368- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000351:264835..287368- >TCONS_00020309 ID=TCONS_00020309|Name=TCONS_00020309|organism=Clytia hemisphaerica|type=CDS|length=136152bp|location=Sequence derived from alignment at sc0000351:264835..287368- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020309 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.789e-28 Identity = 69/163 (42.33%), Postives = 85/163 (52.15%), Query Frame = 3
Query: 2907 WSPWSECSVTC-NGTRNRQRTCFD--------YCDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCXXXXXXXXXLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNPDCPGPNEDKQPCNVDVC 3365
W PW CS +C GT+ R R C + YCDG +++ C + CPIHG + W+ WS C SCGGG RTR C P PQY G C G+ V S+ C CP W+ WS W +C + CN G R RTC NP G C GP+ Q CN D+C
Sbjct: 4649 WQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 2 Score: 108.612 bits (270), Expect = 3.370e-23 Identity = 97/347 (27.95%), Postives = 127/347 (36.60%), Query Frame = 3
Query: 2430 SEWGEWSPCSRECKRGTKTRARICYDQTLFDEDDNSCGGELLTDEQECLTRENCQGSGYYL-----AEVQQSCDEFCASKELGCSSEIET-------GNSINAFMDVLLPYTTDPTRIEWQKTYSPGCLVGDVCVEFEGVPNEVK---CDRRPEE------DNFRRFCHCVNETDVGF----GPWSPWSECSVTC-NGTRNRQRTCFD--------YCDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCXXXXXXXXXLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTC-NPANYGGNPDCPGPNEDKQPCNVDVC 3365
S+W W CS C +G + R+R+C +Q L C G L E + C G + E +SC ++ C++ GN++ M + P WQ C E G + + C+ P D NE + W+ WS CSV+C G R R R C D C+G + + C + CP HG S WS W C +C GG R R CD P P G C G C CPVD +W W WS C C G R+R C +P G CPG CNV C
Sbjct: 4533 SQWSAWRACSVTCGKGIQKRSRLC-NQPLPANGGKPCQGSDL--EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQP--------WGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 3 Score: 107.457 bits (267), Expect = 8.555e-23 Identity = 66/164 (40.24%), Postives = 80/164 (48.78%), Query Frame = 3
Query: 2895 GFGPWSPWSECSVTC-NGTRNRQRTC--------FDYCDGQVEEIENCGAQYCPIHGGLSEWSQWSCCDASCXXXXXXXXXLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNPDCPGPNEDKQPCN 3353
GF WS W CSVTC G + R R C C G E+ NC + CP+ G SEWS W C SCG G TRTR C+ P+ Q+ G C GN V+ C + CPV W+ W W +C + C G R R CN P +GG+ C G Q CN
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGS-YCDGAETQMQVCN 4693 HSP 4 Score: 90.1225 bits (222), Expect = 1.552e-17 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 3
Query: 3030 IHGGLSEWSQWSCCDASCXXXXXXXXXLCDAPAPQYNGNDCIGNLVDSNDCGVGNCPVDATWTEWSVWSSCDKPCNTGHYVRRRTCN--PANYGGNPDCPGPNEDKQPCNVDVC 3365
+HGG S+WS W C +CG G R+RLC+ P P G C G+ ++ +C CPVD +W+EWS+W C + C G+ R RTCN +GG P C G + CN+ C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRP-CEGNAVEIIMCNIRPC 4640 The following BLAST results are available for this feature:
BLAST of TCONS_00020309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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