TCONS_00020315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020315
Unique NameTCONS_00020315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020315 ID=TCONS_00020315|Name=TCONS_00020315|organism=Clytia hemisphaerica|type=transcript|length=506bp
CAAGGATCTCTTTATTGATGTTATAGTCTAATGATCTATCTACTGGGTTG
TAACCACTGTAAATAAATCTATGTCTTGGTAAACGATTTCTATGCCTTGC
ACACATGTATGTACGGCCACGACATAGAAACACCAAGTCTAGTTTTTTAG
AACGTTCGAACGCAAGAAGTTGATCCGTCAGCGTTGGATGATAAGTCAAA
TCACTTCGGTCATCAATGTAAAGCAGTGTCGATCTTGAAGGTACTGGTAA
ACCGTATAGTATATGAAGAAGTTCACTTCGCCACATGCGTTTGCCATACA
AATTAGTTTCAGAATCAAAATCCGCATTTATGTATTGATGAATATAAGAT
TGATTCATATGCAGTAATTGTCTTTTAAGTGGTGAATACATGAAGAGTTT
GATGCAACTTTCAGATAGTGATGGGTTCATTGGTAAAAGTTCTCTGACAA
GAAATCTGAAGAGTTTAGGATAGAATTTCTTTGATTCACGTCTATTGATA
TCTGGG
Run BLAST on NCBI

protein sequence of TCONS_00020315-protein

>TCONS_00020315-protein ID=TCONS_00020315-protein|Name=TCONS_00020315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
PDINRRESKKFYPKLFRFLVRELLPMNPSLSESCIKLFMYSPLKRQLLHM
NQSYIHQYINADFDSETNLYGKRMWRSELLHILYGLPVPSRSTLLYIDDR
SDLTYHPTLTDQLLAFERSKKLDLVFLCRGRTYMCARHRNRLPRHRFIYS
GYNPVDRSLDYNINKEIL
Run BLAST on NCBI

transcript from alignment at sc0000351:86948..87453

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020315 ID=TCONS_00020315|Name=TCONS_00020315|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000351:86948..87453 (Clytia hemisphaerica)
CCCAGATATCAATAGACGTGAATCAAAGAAATTCTATCCTAAACTCTTCA
GATTTCTTGTCAGAGAACTTTTACCAATGAACCCATCACTATCTGAAAGT
TGCATCAAACTCTTCATGTATTCACCACTTAAAAGACAATTACTGCATAT
GAATCAATCTTATATTCATCAATACATAAATGCGGATTTTGATTCTGAAA
CTAATTTGTATGGCAAACGCATGTGGCGAAGTGAACTTCTTCATATACTA
TACGGTTTACCAGTACCTTCAAGATCGACACTGCTTTACATTGATGACCG
AAGTGATTTGACTTATCATCCAACGCTGACGGATCAACTTCTTGCGTTCG
AACGTTCTAAAAAACTAGACTTGGTGTTTCTATGTCGTGGCCGTACATAC
ATGTGTGCAAGGCATAGAAATCGTTTACCAAGACATAGATTTATTTACAG
TGGTTACAACCCAGTAGATAGATCATTAGACTATAACATCAATAAAGAGA
TCCTTG

Coding sequence (CDS) from alignment at sc0000351:86948..87453

>TCONS_00020315 ID=TCONS_00020315|Name=TCONS_00020315|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000351:86948..87453 (Clytia hemisphaerica)
CCAGATATCAATAGACGTGAATCAAAGAAATTCTATCCTAAACTCTTCAG
ATTTCTTGTCAGAGAACTTTTACCAATGAACCCATCACTATCTGAAAGTT
GCATCAAACTCTTCATGTATTCACCACTTAAAAGACAATTACTGCATATG
AATCAATCTTATATTCATCAATACATAAATGCGGATTTTGATTCTGAAAC
TAATTTGTATGGCAAACGCATGTGGCGAAGTGAACTTCTTCATATACTAT
ACGGTTTACCAGTACCTTCAAGATCGACACTGCTTTACATTGATGACCGA
AGTGATTTGACTTATCATCCAACGCTGACGGATCAACTTCTTGCGTTCGA
ACGTTCTAAAAAACTAGACTTGGTGTTTCTATGTCGTGGCCGTACATACA
TGTGTGCAAGGCATAGAAATCGTTTACCAAGACATAGATTTATTTACAGT
GGTTACAACCCAGTAGATAGATCATTAGACTATAACATCAATAAAGAGAT
CCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011402XLOC_011402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020315-proteinTCONS_00020315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020315-exon-sc0000351-1491911889:86948..87453TCONS_00020315-exon-sc0000351-1491911889:86948..87453Clytia hemisphaericaexon
TCONS_00020315-exon-sc0000351-1510915933:86948..87453TCONS_00020315-exon-sc0000351-1510915933:86948..87453Clytia hemisphaericaexon
TCONS_00020315-exon-sc0000351-1575043694:86948..87453TCONS_00020315-exon-sc0000351-1575043694:86948..87453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:86948..87453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53924	5.35836	2.29928	1.85252	0	0	0	0	0	0.124685	0	0	0.0794449	0.0825043	0	0	0.179347	0.0919124	0.761891	0.265755	2.0789	0.507008	4.38282	4.35818	0.256504	0.343386	0.491384	0.524418	1.85618	2.97181
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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