TCONS_00020325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020325
Unique NameTCONS_00020325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020325 ID=TCONS_00020325|Name=TCONS_00020325|organism=Clytia hemisphaerica|type=transcript|length=279bp
TGCTCTGCCAAGCTCAAATAAATTTACCCTTCCACCCGAAGCATAACAga
agaaatctttatttattgTTCCAATTTCAACTGCTACAACTAAGCAACGN
AAGCAACAAACACGAAAAAGACTGCTCTGCCAAGCTCAAATAAATTTACC
CTTCCACCCGAAGCATAACAgaagaaatctttatttattgTACTAAGCAA
CGAGATTCAATTTCTGCTCTCCATCATCAACTATATATTGTACGTACAAA
TCAGCCTGAGTAAGAACCTGATGTCACAC
Run BLAST on NCBI

transcript from alignment at sc0000351:258464..258742

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020325 ID=TCONS_00020325|Name=TCONS_00020325|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0000351:258464..258742 (Clytia hemisphaerica)
GTGTGACATCAGGTTCTTACTCAGGCTGATTTGTACGTACAATATATAGT
TGATGATGGAGAGCAGAAATTGAATCTCGTTGCTTAGTAcaataaataaa
gatttcttcTGTTATGCTTCGGGTGGAAGGGTAAATTTATTTGAGCTTGG
CAGAGCAGTCTTTTTCGTGTTTGTTGCTTNCGTTGCTTAGTTGTAGCAGT
TGAAATTGGAAcaataaataaagatttcttcTGTTATGCTTCGGGTGGAA
GGGTAAATTTATTTGAGCTTGGCAGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011412XLOC_011412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020325-exon-sc0000351-1491911889:258464..258742TCONS_00020325-exon-sc0000351-1491911889:258464..258742Clytia hemisphaericaexon
TCONS_00020325-exon-sc0000351-1510915933:258464..258742TCONS_00020325-exon-sc0000351-1510915933:258464..258742Clytia hemisphaericaexon
TCONS_00020325-exon-sc0000351-1575043694:258464..258742TCONS_00020325-exon-sc0000351-1575043694:258464..258742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:258464..258742 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.19454	0.605899	14.0923	9.00404	13.6073	8.60615	6.00446	5.67404	12.8103	6.24901	9.1117	2.67549	0	0.346365	1.41527	2.95701	0.0974681	1.89761	13.0966	18.012	7.16821	11.5802	2.72674	5.16204	24.336	20.427	9.89958	13.6809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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