TCONS_00020327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020327
Unique NameTCONS_00020327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020327 ID=TCONS_00020327|Name=TCONS_00020327|organism=Clytia hemisphaerica|type=transcript|length=748bp
CGGAAATATAAATGTTTGAGTTAAATAGGCATTTGAATGATTTTACGATT
AATTCTCCTTGTTGAGTGGGATCATTTTGAAAGCACGAGTACCGAATTAG
TTCTTTGTTTCGATTCAATCGGAGGATCTAATGTTTTGATGTGAGCAGCT
TCTGGCCGATGAAACTTTAGTACATTCCCTACAATATGACAATTCTGCCC
GGCAATTGTCCAGGTGGGACAGTCCCGCACCGTACCGGTATCCCCGGCAA
CCGGTGACAACGGGCTAACTTCTTTTTTTGGCGAGAGCGCTTGGAACATT
TTAATATTCGTTTCATTGCACTCTGATCCCTCTGATATTCAAACAGCCTC
AGAGAGACAATTTTAAAAAAGGGAATAAGAACGAAGGGTTTCAGGGATTT
AAAACTACATTTTTTATCAGAGCATCCctaatttttgaagccttctgatT
ATGTTGACTTTTTTTAGTCTTAAGCATAAAAAtcttcttaacatattctt
ctCTCGCCATTTTATGAATAATTTTGTCCTTCTTCCTATAAAGAactcgg
gtgttttagagtccgtaaaggccttaaaattttcttaacttgttcttaat
atctaggccatcgaagcctatgttcttatatattttgatCTTGTAAAAAA
CGTACAGTTCGCTCTctgattcgatcttcaagggaaattcatcgaataag
ggagcagcgtttatgaaagtttcttgttgacggggactttaatagtag
Run BLAST on NCBI

transcript from alignment at sc0000351:276719..277466

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020327 ID=TCONS_00020327|Name=TCONS_00020327|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at sc0000351:276719..277466 (Clytia hemisphaerica)
ctactattaaagtccccgtcaacaagaaactttcataaacgctgctccct
tattcgatgaatttcccttgaagatcgaatcagAGAGCGAACTGTACGTT
TTTTACAAGatcaaaatatataagaacataggcttcgatggcctagatat
taagaacaagttaagaaaattttaaggcctttacggactctaaaacaccc
gagtTCTTTATAGGAAGAAGGACAAAATTATTCATAAAATGGCGAGagaa
gaatatgttaagaagaTTTTTATGCTTAAGACTAAAAAAAGTCAACATAa
tcagaaggcttcaaaaattagGGATGCTCTGATAAAAAATGTAGTTTTAA
ATCCCTGAAACCCTTCGTTCTTATTCCCTTTTTTAAAATTGTCTCTCTGA
GGCTGTTTGAATATCAGAGGGATCAGAGTGCAATGAAACGAATATTAAAA
TGTTCCAAGCGCTCTCGCCAAAAAAAGAAGTTAGCCCGTTGTCACCGGTT
GCCGGGGATACCGGTACGGTGCGGGACTGTCCCACCTGGACAATTGCCGG
GCAGAATTGTCATATTGTAGGGAATGTACTAAAGTTTCATCGGCCAGAAG
CTGCTCACATCAAAACATTAGATCCTCCGATTGAATCGAAACAAAGAACT
AATTCGGTACTCGTGCTTTCAAAATGATCCCACTCAACAAGGAGAATTAA
TCGTAAAATCATTCAAATGCCTATTTAACTCAAACATTTATATTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011414XLOC_011414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020327-exon-sc0000351-1491911889:276719..277466TCONS_00020327-exon-sc0000351-1491911889:276719..277466Clytia hemisphaericaexon
TCONS_00020327-exon-sc0000351-1510915933:276719..277466TCONS_00020327-exon-sc0000351-1510915933:276719..277466Clytia hemisphaericaexon
TCONS_00020327-exon-sc0000351-1575043694:276719..277466TCONS_00020327-exon-sc0000351-1575043694:276719..277466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:276719..277466 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.724036	1.60466	1.56505	1.53116	0	0.0701424	0.169248	0	0	0	0	0	0	0	0.112127	0.0401097	0	0	0	0	0	0	0.0754695	0.343064	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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