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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020328 ID=TCONS_00020328|Name=TCONS_00020328|organism=Clytia hemisphaerica|type=transcript|length=953bp
GTTTCGCTTAcacttttgccacttttgccctTCTTCCCACTTCTGCCACC
ATCacgttgaaacatttttaaaaagtgtgaaaagtggCTCCTTCAGCTAA
CTTGTGCCAGGCAACGTCTAAAACCAAGACCACATTTCTTTCAATAAAGG
CCCGAAACAGTGGTCCTTCTAACAAAAATCCCTCATCCGTCGAAAGGCTA
CGCGGCCTCACTCTAGGTCTTTACTTTACATTTTCAATCGGTTCAGCTTA
AATTATGCCGTCTGCCATCTTGCGAATAAATTTATTCTCTGGTTACGTCc
ataaattatgtaaaaaatgtaaacaaaaaatcgaaatcgaaagtgaaaaa
agGACTCACAAGTATTTGTTGTTGCTGGTTAAAAAGTTACCACTCAAACA
CAAACAATCAATTATAATATGATGTCAAAACGTAGACAAATCATCTCAGC
TCTTGCTCTAAGTCTATTTGATGACAATGAAATGGAAATATTGCGAGAAG
AGCCAAGCACCTCTAAAAAACGAATGGTTATGGCAACTACAGCTGCCTTC
TCTGAGATGTTGCCTGGTTGCTGCACCAGAGAAAAATACAGTAAACATAA
AGAATTCATACCTTTCATCGATACCTACCACCCGAATACGTTTACAGCAA
TGTTTAGAATGACAAGATCGACCTTTGACACTTTACTGGGAGCAATTTGC
ATGGATGAgacatttttgaaacaaaatagtgGAGGTATGTATGTATAGTT
ATGTATATTGGATGGTATGGATTTTTTTGTGTAAGGGAGAATAATTTTTG
TTAATGTCTAAAGCATGCTGATGCTTATTCTAAACCCAATATCTCACTCA
GATCCTGAGAAAGTACCACTTTTACACACATTTTGTAGAAACAATTTGGA
ACCTGGTGGCACTTGGGGCAAAGATGTGAAAAATAGCAGCGAAACAATTT
GCC Run BLAST on NCBI protein sequence of TCONS_00020328-protein >TCONS_00020328-protein ID=TCONS_00020328-protein|Name=TCONS_00020328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MMSKRRQIISALALSLFDDNEMEILREEPSTSKKRMVMATTAAFSEMLPG
CCTREKYSKHKEFIPFIDTYHPNTFTAMFRMTRSTFDTLLGAICMDETFL
KQNSGGMYV Run BLAST on NCBI transcript from alignment at sc0000351:300837..301789 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020328 ID=TCONS_00020328|Name=TCONS_00020328|organism=Clytia hemisphaerica|type=transcript|length=953bp|location=Sequence derived from alignment at sc0000351:300837..301789 (Clytia hemisphaerica)
GGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGTGCCACCA
GGTTCCAAATTGTTTCTACAAAATGTGTGTAAAAGTGGTACTTTCTCAGG
ATCTGAGTGAGATATTGGGTTTAGAATAAGCATCAGCATGCTTTAGACAT
TAACAAAAATTATTCTCCCTTACACAAAAAAATCCATACCATCCAATATA
CATAACTATACATACATACCTCcactattttgtttcaaaaatgtcTCATC
CATGCAAATTGCTCCCAGTAAAGTGTCAAAGGTCGATCTTGTCATTCTAA
ACATTGCTGTAAACGTATTCGGGTGGTAGGTATCGATGAAAGGTATGAAT
TCTTTATGTTTACTGTATTTTTCTCTGGTGCAGCAACCAGGCAACATCTC
AGAGAAGGCAGCTGTAGTTGCCATAACCATTCGTTTTTTAGAGGTGCTTG
GCTCTTCTCGCAATATTTCCATTTCATTGTCATCAAATAGACTTAGAGCA
AGAGCTGAGATGATTTGTCTACGTTTTGACATCATATTATAATTGATTGT
TTGTGTTTGAGTGGTAACTTTTTAACCAGCAACAACAAATACTTGTGAGT
Ccttttttcactttcgatttcgattttttgtttacattttttacataatt
tatgGACGTAACCAGAGAATAAATTTATTCGCAAGATGGCAGACGGCATA
ATTTAAGCTGAACCGATTGAAAATGTAAAGTAAAGACCTAGAGTGAGGCC
GCGTAGCCTTTCGACGGATGAGGGATTTTTGTTAGAAGGACCACTGTTTC
GGGCCTTTATTGAAAGAAATGTGGTCTTGGTTTTAGACGTTGCCTGGCAC
AAGTTAGCTGAAGGAGccacttttcacactttttaaaaatgtttcaacgt
GATGGTGGCAGAAGTGGGAAGAagggcaaaagtggcaaaagtgTAAGCGA
AAC Coding sequence (CDS) from alignment at sc0000351:300837..301789 >TCONS_00020328 ID=TCONS_00020328|Name=TCONS_00020328|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000351:300837..301789 (Clytia hemisphaerica)
CTATACATACATACCTCcactattttgtttcaaaaatgtcTCATCCATGC
AAATTGCTCCCAGTAAAGTGTCAAAGGTCGATCTTGTCATTCTAAACATT
GCTGTAAACGTATTCGGGTGGTAGGTATCGATGAAAGGTATGAATTCTTT
ATGTTTACTGTATTTTTCTCTGGTGCAGCAACCAGGCAACATCTCAGAGA
AGGCAGCTGTAGTTGCCATAACCATTCGTTTTTTAGAGGTGCTTGGCTCT
TCTCGCAATATTTCCATTTCATTGTCATCAAATAGACTTAGAGCAAGAGC
TGAGATGATTTGTCTACGTTTTGACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020328-exon-sc0000351-1491911889:300837..301789 | TCONS_00020328-exon-sc0000351-1491911889:300837..301789 | Clytia hemisphaerica | exon |
| TCONS_00020328-exon-sc0000351-1510915933:300837..301789 | TCONS_00020328-exon-sc0000351-1510915933:300837..301789 | Clytia hemisphaerica | exon |
| TCONS_00020328-exon-sc0000351-1575043694:300837..301789 | TCONS_00020328-exon-sc0000351-1575043694:300837..301789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000351 | supercontig | sc0000351:300837..301789 . |
Blast
The following BLAST results are available for this feature:
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