TCONS_00020330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020330
Unique NameTCONS_00020330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020330 ID=TCONS_00020330|Name=TCONS_00020330|organism=Clytia hemisphaerica|type=transcript|length=524bp
CAATGGAATTTCATCCCGACAAATGCAAACTTATCCGTATCacaaaaaaa
agataattgAAGCTTATTATTCCATCCATGGTGTCCAACTTGAGAAGGTT
GACCAAGCAAAGTACCTCGGCATAACCATAACGAAAAATCTAAATTGGAA
AAAACACATTAGCAACATCATATCAAAAGCAACTAATGTTCGTCTTTATC
TCCAAAGAAATCTTCACCACTTTGACAAAGAATCTAAACTCCTATGTTAC
AAAGTATTTGTGCGGACAATCTTGGAATATGCTAGCTCTGTTTGGAGTCC
AAATAGTACACAGCTACTCATCAACAACTTAGAAATGGTACAAAGAAAGG
CGGCTCGTTGGGTGGAAAACAAGTGGCAATATGTCTTCAGTCCAACTCGA
ATGATCAAATCACTTAAACTGGAGTCATTGGAAACTAGAAGACAAATAGC
ATGTCTGAAGTTACTATTTGACATCAAcaataattcaaaatttgtgGACG
ATCAATTAAAACCAGCACGTCANN
Run BLAST on NCBI

protein sequence of TCONS_00020330-protein

>TCONS_00020330-protein ID=TCONS_00020330-protein|Name=TCONS_00020330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
NGISSRQMQTYPYHKKKIIEAYYSIHGVQLEKVDQAKYLGITITKNLNWK
KHISNIISKATNVRLYLQRNLHHFDKESKLLCYKVFVRTILEYASSVWSP
NSTQLLINNLEMVQRKAARWVENKWQYVFSPTRMIKSLKLESLETRRQIA
CLKLLFDINNNSKFVDDQLKPARX
Run BLAST on NCBI

transcript from alignment at sc0000351:312393..312916

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020330 ID=TCONS_00020330|Name=TCONS_00020330|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0000351:312393..312916 (Clytia hemisphaerica)
NNTGACGTGCTGGTTTTAATTGATCGTCcacaaattttgaattattgTTG
ATGTCAAATAGTAACTTCAGACATGCTATTTGTCTTCTAGTTTCCAATGA
CTCCAGTTTAAGTGATTTGATCATTCGAGTTGGACTGAAGACATATTGCC
ACTTGTTTTCCACCCAACGAGCCGCCTTTCTTTGTACCATTTCTAAGTTG
TTGATGAGTAGCTGTGTACTATTTGGACTCCAAACAGAGCTAGCATATTC
CAAGATTGTCCGCACAAATACTTTGTAACATAGGAGTTTAGATTCTTTGT
CAAAGTGGTGAAGATTTCTTTGGAGATAAAGACGAACATTAGTTGCTTTT
GATATGATGTTGCTAATGTGTTTTTTCCAATTTAGATTTTTCGTTATGGT
TATGCCGAGGTACTTTGCTTGGTCAACCTTCTCAAGTTGGACACCATGGA
TGGAATAATAAGCTTcaattatcttttttttgtGATACGGATAAGTTTGC
ATTTGTCGGGATGAAATTCCATTG

Coding sequence (CDS) from alignment at sc0000351:312393..312916

>TCONS_00020330 ID=TCONS_00020330|Name=TCONS_00020330|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000351:312393..312916 (Clytia hemisphaerica)
NTGACGTGCTGGTTTTAATTGATCGTCcacaaattttgaattattgTTGA
TGTCAAATAGTAACTTCAGACATGCTATTTGTCTTCTAGTTTCCAATGAC
TCCAGTTTAAGTGATTTGATCATTCGAGTTGGACTGAAGACATATTGCCA
CTTGTTTTCCACCCAACGAGCCGCCTTTCTTTGTACCATTTCTAAGTTGT
TGATGAGTAGCTGTGTACTATTTGGACTCCAAACAGAGCTAGCATATTCC
AAGATTGTCCGCACAAATACTTTGTAACATAGGAGTTTAGATTCTTTGTC
AAAGTGGTGAAGATTTCTTTGGAGATAAAGACGAACATTAGTTGCTTTTG
ATATGATGTTGCTAATGTGTTTTTTCCAATTTAGATTTTTCGTTATGGTT
ATGCCGAGGTACTTTGCTTGGTCAACCTTCTCAAGTTGGACACCATGGAT
GGAATAATAAGCTTcaattatcttttttttgtGATACGGATAAGTTTGCA
TTTGTCGGGATGAAATTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011417XLOC_011417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020330-proteinTCONS_00020330-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020330-exon-sc0000351-1491911889:312393..312916TCONS_00020330-exon-sc0000351-1491911889:312393..312916Clytia hemisphaericaexon
TCONS_00020330-exon-sc0000351-1510915933:312393..312916TCONS_00020330-exon-sc0000351-1510915933:312393..312916Clytia hemisphaericaexon
TCONS_00020330-exon-sc0000351-1575043694:312393..312916TCONS_00020330-exon-sc0000351-1575043694:312393..312916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:312393..312916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22552	1.47207	1.96193	1.96359	6.15888	4.90865	4.08659	5.79391	3.68754	4.7208	4.29753	3.80962	8.48069	7.15098	3.06307	2.61393	3.46322	3.48931	3.72024	5.51977	3.21151	2.84894	1.7306	1.83734	2.22102	3.02685	34.3102	36.6516	25.3312	32.9568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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