TCONS_00020332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020332
Unique NameTCONS_00020332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020332 ID=TCONS_00020332|Name=TCONS_00020332|organism=Clytia hemisphaerica|type=transcript|length=302bp
CACAGGAGTATCAATCATTCACAGATTTACAATTCAGCAAGAACAAGACA
GTTCATGATATACAATGGCATCCACACATAAAAGGTGTGATTGCAGTGTC
CTGTACGGAGCACATGTCATTTTACGAGAGGATCGATAAAACAACACGAG
CTTCTCAATCACCTTCGTTAATCCTTATTTGGAGTTTCGCTGACCCTATT
CATCCCTTGttACTATTGGAAGCACCAGACGATATTTTGTGTTTCAAATT
CAATCCATCAGATCCAAACATCGTTTGCGCTGGATGCTTTAACGGACAGG
TC
Run BLAST on NCBI

transcript from alignment at sc0000354:29561..32670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020332 ID=TCONS_00020332|Name=TCONS_00020332|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at sc0000354:29561..32670+ (Clytia hemisphaerica)
CACAGGAGTATCAATCATTCACAGATTTACAATTCAGCAAGAACAAGACA
GTTCATGATATACAATGGCATCCACACATAAAAGGTACGTCAACTTAGGC
TACTGGCATCCACTagcggattcgtgctccttacaTACTCCTTGtatact
acctgcggttttaAAGAGTTCTGCAATTCAGACTAACGTTTGCTTCCCTT
TTTAATGACATCATTGACATCCACTGAtctctaactacttgactggatcg
ggcACGCCTTAAAAATAAGCGAGTGGGGAAAAAACTACGGGTTGCTCTAA
ATCACTCCAGTCACTTCGCTGGTTTTAGGACTGAcaagttttgttttcaa
ttcttgTCGTCAACAACGCaattcgaaaatattttgaaattcgaacgttg
GAAAATTTAAGGTTGATTAAAAAACAACATGGTAGACTAGTCGACCTCAA
GACTGGATATATTATTATTCGATGATTATACTTATTCGATGGAAATCCTa
tttctcttgaaaattgaattagaaaGCTTCAACTGTACTAtagttgaaat
cttttatacctttttaaaataattttatgaagaaaaagaattgTATATAT
Aagtaataaggacgaaatgcatatgctgctctgccacccaaatctcctga
gtgaatatagttggacagaaattcttatttcttcacatatattttCACAG
GTGTGATTGCAGTGTCCTGTACGGAGCACATGTCATTTTACGAGAGGATC
GATAAAACAACACGAGCTTCTCAATCACCTTCGTTAATCCTTATTTGGAG
TTTCGCTGACCCTATTCATCCCTTGGTAagcagtgttaaaagttctttcG
TTTCCTTATTTGGAGTTTTGCTGACCCCATTCATCCCTTGGTAagcagtg
ttaaaagttctttcGTTTCCTTATTTGGAGTTTCGCTGACCCCATTCATC
CCTTGGTAagcagtgttaaaagttcttccgttTCATCATTTGGAGTTTTG
CTGACCCCATTCATCCCTTGGTAagcagtgttaaaagttcttccgtttcc
ttttttggagttttgctGACCCCATTCATCCCTTGGTAAGCAGTGTTTAA
AGTTCTTTCGTTTCCTTATTTGGAGTTTCGCTGACCCCATACATCCCTTG
GTAAGCAGTAATAAAACTTCTTCCGTTTCCTTATTTGGAGTTTCGCTGAC
CCTATTCATCCCTTGGTAAGCAGTGTTAAAGGTTCTTTCGTTTCCTTATT
TGGAGTTTCGCTCTCCCCAGTCATCGCCTGGTAagcagtgttaaaagttc
tttcGTCTCCTTATTTGGAGTTTCGCTGACTCCATTCATCCCTTGGTAAG
CAGTGTTAAAGGTTCTTTCGTTTCCTTATTTGGAGTTTCGCTCTCCCCAG
TCATCGCCTGGTAagcagtgttaaaagttctttcGTCTCCTTATTTGGAG
TTTCGCTGACCCCATACATCCCTTGGTAAGCAGTAATAAAACTTCTTCCG
TTTCCTTATTTGGAGTTTCGCTGACCCCATTCATCCCTTGGTAAGCAGTG
TCAAGTTCTTTCGTTTCCTTATTTGGAGTTTCGCTGACCCCATTCATCCC
TTGGTAagcagtgttaaaagttctttcGTTTCCTTATTTGGAGTTTCGCT
GACCCCATTCATCCCTTGGTAagcagtgttaaaagttctttcGTTTCCTT
ATTTGGAGTTTTGTTGACCCCATTCATCCCTTGGTAAGCAGTGTTAAAAG
TTGTTTCGTCTCCTTATTTGGAGTTTCGCTGACTCCATTCATCCCTTGGT
AAGCAttgttaaaagttcttccgtctcattATTTGGAGTTTTGCTGACCC
CATTCACCCCTTGGTAAGCAGTTTTAAAAGTTCTTTCGTTTCCTTATTTG
GAGTTTCGCTGTATCCATTCATCCCTTGGTAAGCAGTGTTAAAAGTTGTT
TCGTCTCCTTATTTGGAGTTTCGCTGTATCCATTCATCCCTTGGTAAGCA
GTGTTAAAAGTTGTTTCGTCTCCTTATTTGGAGTTTCGCTGACTCCATTC
ATCCCTTGGTAAGCAttgttaaaagttcttccgtctcattATTTGGAGTT
TTGCTGACCCCATTCACCCCTTGGTAAGCAGTTTTAAAAGTTCTTTCGTT
TCCTTATTTGGAGTTTCGCTGTATCCATTCATCCCTTGGTAAGCAGTGTT
AAAAGTTGTTTCGTCTCCTTATTTGGAGTTTCGCTGTATCCATTCATCCC
TTGGTAAGCAGTGTTAAAAGTTGTTTCGTCTCCTTATTTGGAGTTTCGCT
GTATCCATTCATCCCTTGGTAAGCAGTGTTAAAAGTTGTTTCGTCTCCTT
ATTTGGAGTTTCGCTGTATCCATTCATCCCTTGGTAAGCAGTTgtaaaaa
aatctttcgtcTCAGACAGATTTCCGTTTCAGTGGAAGTATAggcttttc
cgtctcaaaaATTCTTCATAAttcactaaaatttcaaaagttcttCCGTT
TCCTCATTTGGAGTTTCGCAGACCCCATTCATCCTTTGGTAagcagtgtt
aaaagttctttcGTTTCCTTATTTGGAGTTTCGCTGACCCCATTCATCCC
TTGGTAAGCAGTGTCAAGTTCTTTCGTTTCCTTATTTGGAGTTTCGCTGA
CCCCATACATCCCTTGGTAagcagtgttaaaagttctttcGTTTCCTTAT
TTGGAGTTTCGCTGACCCCATTCATCCCTTGGTAAGCAGTGTTAAAGTTC
TTCGTTAATCCTTATTTGGAGTTTCGCTGACCCCATTCATCCTTTGGTAA
GCAGTcttaaaagttcttccgtctcagtgAAGTATATTAGGGTTTTCTGT
CTCAAAAATTCTGAataaaatctccaaaatttcTTACCGCCCTTATACTT
CGTATCACTTGACTAAGAAGCGCCGAACGAACAAAAATAAATGGGTTGAG
AAGTACCAGAATTCAGATAAAGCGCAGTGATCTTGACACATACcgtatat
ttttcttttgtttttagttACTATTGGAAGCACCAGACGATATTTTGTGT
TTCAAATTCAATCCATCAGATCCAAACATCGTTTGCGCTGGATGCTTTAA
CGGACAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011419XLOC_011419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020332-exon-sc0000354-1491911889:29561..29644TCONS_00020332-exon-sc0000354-1491911889:29561..29644Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1510915933:29561..29644TCONS_00020332-exon-sc0000354-1510915933:29561..29644Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1575043694:29561..29644TCONS_00020332-exon-sc0000354-1575043694:29561..29644Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1491911889:30261..30385TCONS_00020332-exon-sc0000354-1491911889:30261..30385Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1510915933:30261..30385TCONS_00020332-exon-sc0000354-1510915933:30261..30385Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1575043694:30261..30385TCONS_00020332-exon-sc0000354-1575043694:30261..30385Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1491911889:32578..32670TCONS_00020332-exon-sc0000354-1491911889:32578..32670Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1510915933:32578..32670TCONS_00020332-exon-sc0000354-1510915933:32578..32670Clytia hemisphaericaexon
TCONS_00020332-exon-sc0000354-1575043694:32578..32670TCONS_00020332-exon-sc0000354-1575043694:32578..32670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000354supercontigsc0000354:29561..32670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4678	11.6216	23.7144	21.9878	2.08149	0.812147	6.97109	6.96681	12.5664	13.7276	11.8318	9.86156	0.600973	0.743997	0.847085	0.579488	0.881016	0.914326	1.85956	0	2.0616	2.25662	1.0195	3.77525	22.3161	15.725	2.44146	2.98057	0.593313	1.29193
Blast
[Close]
BLAST of TCONS_00020332 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.879e-33
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 3 
Query:    3 QEYQSFTDLQFSKNKTVHDIQWHPHIKGVIAVSCTEHMSFYERIDKTTRASQSPSLILIWSFADPIHPLLLLEAPDDILCFKFNPSDPNIVCAGCFNGQV 302
            +EYQSFTDL     K +  + WHP I G+IAVS    +SF +R+  + +    PSLIL WSF+DPIHP L+LE+PDDI CFKF PSDPNI+  GC NGQ+
Sbjct:  323 KEYQSFTDLHSPTEKMITCVSWHPTIYGLIAVSVAVRLSFEDRVHFSGKLLLQPSLILFWSFSDPIHPQLMLESPDDIFCFKFCPSDPNIIAGGCINGQI 422
The following BLAST results are available for this feature:
BLAST of TCONS_00020332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR631.879e-3356.00WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
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