TCONS_00020343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020343
Unique NameTCONS_00020343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020343 ID=TCONS_00020343|Name=TCONS_00020343|organism=Clytia hemisphaerica|type=transcript|length=249bp
AAGAAACGGGAACACCGCCATACATCtttcccatattttttaccTCCAAA
ACACAAGAAATTTTCTCATGTAAAGCAGATGAAGATGTGAAAGAGGAAAA
TCCTCATAAAATCATAACAAAGGAACAAATTCAACAAGATTTCAAAGATC
GTGCTGCCATCTCTGATTTTCATCCTGCAAAGAAGATTGTTGAGGAATAC
CCATCAGATGAGCTGCTGATTGTTTACGATGCAGCTTTCCAGTATGGAC
Run BLAST on NCBI

transcript from alignment at sc0000354:46956..47593+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020343 ID=TCONS_00020343|Name=TCONS_00020343|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0000354:46956..47593+ (Clytia hemisphaerica)
AAGAAACGGGAACACCGCCATACATCtttcccatattttttaccTCCAAA
ACACAAGAAATTTTCTCATGTAAAGCAGATGAAGATGTGAAAGAGGAAAA
TCCTCATAAAATCATAACAAAGGAACAAATTCAACAAGATTTCAAAGATC
GTGCTGCCATCTCTGATTTTCATCCTGCAAAGAAGATTGTTGAGGTGAGT
TTTACTTCAGGGAGTACTAAATTTAAAAACGACCTAATTTTGTCTGCAAA
CTTCATCTTTTTAGGGTTCATTTACCTTACAAATTTATgatcatttttaa
aaactcaagtttttaggcttaaaaggGTTGAATACAGAGCAGAAAGTAGG
ACTCTATACTCCATACATTTGAAATCTATATAGATCTGCTAATGATTTTT
ATTAATGTTATCATAAAACACATGGATAagcacacccccttctcacagac
aaaCTATCCACaggaaaaattgtcaaaatatcgtcttggtggaaaattat
acttcaaTTTTTGTACCCACTAaatataatcaaataaaccaatcctcact
gcaaaatattaccTTACTACCTTACTACCTTAGGAATACCCATCAGATGA
GCTGCTGATTGTTTACGATGCAGCTTTCCAGTATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011422XLOC_011422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020343-exon-sc0000354-1491911889:46956..47149TCONS_00020343-exon-sc0000354-1491911889:46956..47149Clytia hemisphaericaexon
TCONS_00020343-exon-sc0000354-1510915933:46956..47149TCONS_00020343-exon-sc0000354-1510915933:46956..47149Clytia hemisphaericaexon
TCONS_00020343-exon-sc0000354-1575043694:46956..47149TCONS_00020343-exon-sc0000354-1575043694:46956..47149Clytia hemisphaericaexon
TCONS_00020343-exon-sc0000354-1491911889:47539..47593TCONS_00020343-exon-sc0000354-1491911889:47539..47593Clytia hemisphaericaexon
TCONS_00020343-exon-sc0000354-1510915933:47539..47593TCONS_00020343-exon-sc0000354-1510915933:47539..47593Clytia hemisphaericaexon
TCONS_00020343-exon-sc0000354-1575043694:47539..47593TCONS_00020343-exon-sc0000354-1575043694:47539..47593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000354supercontigsc0000354:46956..47593 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.28354	15.9781	19.8837	9.14523	7.35553	16.0099	8.32704	20.1156	12.1845	23.0971	15.8111	7.73015	1.14509	0.648733	0	0	0	2.78782	0	1.73274	0	2.59483	1.49254	2.58013	44.9987	55.7451	0	0	1.00377	0
Blast
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BLAST of TCONS_00020343 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.637e-29
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 3 
Query:    3 ETGTPPYIFPIFFTSKTQEIFSCKADEDVKEENPHKIITKEQIQQDFKDRAAISDFHPAKKIVEEYPSDELLIVYDAAFQYG 248
            E+   P I+P+  T+KTQEIF+C+ DEDV +E P+K+I KE I +D ++RAA+SDFHP KKIV+EYP +ELL+VYD  F+YG
Sbjct:   32 ESMGHPEIYPLVLTTKTQEIFNCRIDEDVTDEQPYKLINKEDIFEDLRNRAAVSDFHPVKKIVQEYPGNELLLVYDKDFKYG 113
The following BLAST results are available for this feature:
BLAST of TCONS_00020343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR638.637e-2958.54WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
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