TCONS_00020345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020345
Unique NameTCONS_00020345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020345 ID=TCONS_00020345|Name=TCONS_00020345|organism=Clytia hemisphaerica|type=transcript|length=1251bp
AACATTCATTCGACGCACACGATAGTACTATCAACACTCTACAGAAATCT
CCTTTTAACAAGACTATCTTCTTGACCGTTGGTGGATGGACTTTCTCAAT
CTGGAAAGATGGCATCACGtTTGGACCTTTGATACAATCATACCCCCACG
ACTGTAAATTGACAAGCGGCATGTGGAGCCCATCTCGACCTTCCGTCTTT
TTCATCGGAAAAGCTGACGGAAATATTGATGTCTGGGATCTCTTAGATAA
GAGTCACGAACCGTTTTTAACGCAGAATGTTTCGCCTGTTCCAATAATCA
CGGTTTCTCCATTCCAAATGTCACcCAAACAGCAATTACTAGCAGCTGGT
GATGAAGTAGGGACACTGCACGTCATGGAAGTTCCATGGAATTTGCGATA
TGCTACCACCAATGAGCTCCATGCATTTGAACATTATTTGGACCGAGAAG
CAAGTCGTCTTGAGTTATTGGATAAAACACGTGGTCAAAACTCGCTCCCA
ACCTCCATCAAAGTGGATTCAAAAGCAGGACATGTCCAAGAAACTGAAGA
GGAATGGGATACGAGATCAAAAGCTCAATATGCTGAATATCTTGAGATGG
AGAAAAAGCTTTTGATCGAAATGGGATTGCTGGTTGAATCTATGGAGTAA
AGAAAGAGACAAAGTGAAAGAGAAGAAGAAatgtaaatattcaaaaattg
ttgATACATAATTTAACTTGTTGATATGTTGTATGGATCAAggtaaaatt
tcatttattgATCGTTTTCTGTTCTGACAGTTTATTGATCGTTTTTGGTT
TTGACGGAGACCACTTAACTTCTTCGTGTCATATTATATAATATGgagtt
ttcaaatttgaatgGTAGAGTTTCTTCATAAGACTTTGGATTTATTGGAG
TACAATGGATGATCTTTTCGAATTTATTTCATCTGAACATTCctactttg
aaaaatattgaaaaagagATTGATTGATTTTAATGGTTTGATTTGCGATG
GTTGGGCATTGAATCTAAACCAATCACCGCCGTTAATACTATTCCAGAAA
GTTTTTCATCTTAAAACAATCAATGATGGATCTTCTGTATTCACCAGACA
TGACAACGATGAAAAGACTTATGAAACCATTTCAAACAGGGTCAATGATA
CTGGGTCATTTTCTTTGATTAAATCCAAAGAGCTTTGGCCCGTTTTTTCG
TATAATCTGACAAGGATGATTTGATTTGCTGTATATAAAAATTGATGTGT
A
Run BLAST on NCBI

transcript from alignment at sc0000354:123679..128259+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020345 ID=TCONS_00020345|Name=TCONS_00020345|organism=Clytia hemisphaerica|type=transcript|length=4581bp|location=Sequence derived from alignment at sc0000354:123679..128259+ (Clytia hemisphaerica)
AACATTCATTCGACGCACACGATAGTACTATCAACACTCTACAGAAATCT
CCTTTTAACAAGACTATCTTCTTGACCGTTGGTGGATGGACTTTCTCAAT
CTGGAAAGATGGCATCACGGTATGTTTGAATATGTATCGTaaaccgcagt
cgagggcggtCCGAAGGCTCCCCTCTCTTTAGCTGTCTACTCGAATGTAG
GGGACACCACTCCTTTTCCATCGCTTTTTGAAAGCATGGAGTGATTAAAc
ctttaaatatttctttaggTATCGTAAAATGTTTCTTTTAGtttcgtaaa
atgtttttttcagtttcgtaaaatgtttttttcggtatcgtaaaatattt
ctttcagtTTGGACCTTTGATACAATCATACCCCCACGACTGTAAATTGA
CAAGCGGCATGTGGAGCCCATCTCGACCTTCCGTCTTTTTCATCGGAAAA
GCTGACGGAAATATTGATGTCTGGGATCTCTTAGATAAGTAAGTTCACGC
ATTTTTCCGTTTTCGNACCTTCCGTCTTTTTCATCGGCAAAGCTGACGGA
AATATTGATGTTTGGGATCTCCTAGATAAGTAAGTTCACGCATTGTTCTC
CTTTTTCGGTTTTCGTTCGTTCGTGAAGTTCGAAAGCTCACATTGAAACG
GAACAACTGTGGATTGTTTGAATAAACTGTCGTTATTGAAAGGGTAATTT
TGATTCAACTGCTTCTTCTATCAAGATATTACCTTGCGGTTTCAGTCAGT
TAAGCACTCTATTAATGAATAAAAGCAACACATCAATAAGATATTTATCA
TTCCCGaatgtttctttgtttttacgCACAGGAGTCACGAACCGTTTTTA
ACGCAGAATGTTTCGCCTGTTCCAATAATCACGGTTTCTCCATTCCAAAT
GTCACGTGAGTTTGATCTATCTTTAAGAAAATTCTCCATTACCCCCTGAA
ATACAACTCTTCTTCGACAAGTCCAACGGACTTAAAAAGCATTGTCTCCG
AAGGACCTATTCTTGTATTAATCCATTTAAGTTTCATTCAAAAAGTGTCA
ttgggtaaaaaaaattgacacccctgtctcacagtgcCGTTAGGATTTCT
TTCCATaacggggataaaaatttctatcgaaatcaaTCCCAACGGGAGTA
GAAATTCTACTGTTCTCAGGTTAAAAAATCCGGTTACGATGAAAGCAAAG
TCAATTTTCCGGTGAGACTGAAATTGTAAGGTCTTTTTTCCCACAGGGGA
CGACATTTTTGTTGTCTAGTTTTCAAATAGGgtggggtcccaccgggtca
aTGAGAGAGGTATTAAAACAGGTATTATGTGCcatttaaaatcaaattca
acGTACGAGGTACGgggacaccttttcaaccggATATAGGCAAAAGTCCA
AGTCTTTCATTAATGAAACATTCCAACTTAGATTTCTCTATTTAGAGAAA
TAATCATTATATCGCTACGGGTGTTGAACAAATGCTTGTTTGATGTTaaa
ttctgttttctttttaagcCAAACAGCAATTACTAGCAGCTGGTGATGAA
GTAGGGACACTGCACGTCATGGAAGTTCCATGGAATTTGCGATATGCTAC
CACCAATGAGGTACCAGCTGCATTATTTTAATCAGATCAGATCAGATCCC
GCCTGTGAAAAGTGctgtcaaaacatgtgattactcgaaaaattccatgt
gattttattcccatgttacttgcttacaacttacagctgataactttatt
agtgacatgtaacaagcacataaaaatttcgagtaaaagcgtgatttgtt
tTCAGGCTttattttgcaacctgtgtattctgctcagtacgagaggaacc
gcagaCACAGACAATTTGCATTTGCACTTGCTTGGACAGGCAATAATGCG
AAGCTAACATCTGCTGGATTATGATTGAACGCTTCTAAATCTGCATCCGT
GATAAAAAGGGTTGTACTGTGATACAGGGTGTGCTACGATACAGGGGTAT
TGTACTGTGATACATAAGACTTGATAATAACGATGACTAATATTTTACGA
CACCCCCTTCTTACacacccggtgggattttatcagccagtgggggtaaa
aataacggtccaaaactcgatagggattgatattcccatgttcttttatg
gctagggatttaatttccattgttttctagccagagAATGAATTCTCTTT
AGTTtaggaaaaaatagcacaatatttgcagtgaggatttgcttatctgg
ttattttcagtggggacaaaaattggaggataattttccaccgggggagg
ttattttggccaatttttccagtgaggaggggtcctagtgggtctgtgag
aagggggtgttttaaatGGCTGGCCATAGAATGATGACTCAGCTTATATG
CATCTGAGTCATTGTCTCGCAAAGGGATCACTGGTGTAAGTTAAATatga
gttttgatttttgttttaaacGATATAAGGGTTTGGCATTGTTTCATATC
TAAGGGTAGTAAGTACTTTGATACATTGTGTAACATATGTATTGAAAGAC
CTGtctaatttttatgttttttggttTATTTAGCTCCATGCATTTGAACA
TTATTTGGACCGAGAAGCAAGTCGTCTTGAGTTATTGGATAAAACACGTG
GTCAAAACTCGCTCCCAACCTCCATCAAAGTGGATTCAAAAGCAGTGAGT
CAAATAGAATGTCTCTTTCCTAGATCTTCTGTGGAAATATGTATGATGAA
AAACAAGTCTAATTTCCAGATTCTATCATctgggtggggggggggggtag
aggGGGGGGAGAAATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGAGTAGAGTGGAGTG
AGACATTTTTCAATTAAGTTTGGCGTTGACATATTTGGCTAGCCCATAAT
CAGTTAAggagaaaattcaggaaaagaCAGATAGCCACTAAAgctaaaaa
acgaaaattttgacATTTGTCACATAGCTGGTTTGCACATTCAAAATCTA
TATTATCTGTGTTAGGAATGATAGCCGAGTGGTGGCAAGTAAACgaacaa
aacaaaaagcatAAACGTCTACTAAGCGTTATTGCCACAATCCAGGGGAA
CCCGGTTTGGGTTCCGGAACCATCCAATAtatcgagtttatgtatctgtg
tttttctgtgacggagacggtcaggttctaatttgtctacatcctgactg
actgaggatgacggtaaattagcacttttaccgtcctcgattgtGCAAGT
CAAGAAAGCGAGTTGTTCAAAATCGCTTTAGTCACTCtgcgtcctcaaaa
gtgcaaataaatACATAGAATCGCTACTGTAAAACCCTTTACCAATTTAG
CTTTGACTTATAAACTTTTTATCTTCATTATCCCATAGGGACATGTCCAA
GAAACTGAAGAGGAATGGGATACGAGATCAAAAGCTGTGAGTCTTCATTT
CTTTTACACTTgaatttctataattcgaactaataaGTCTTTATAATACT
GTaatcagaaagaaaaaaattgcataATTTCAGTAATTTCTCATGGAAAA
TTGGCCATATGATATTATTGCCATATAATAAGATATTATGACCAAATACC
AAATTTTAGGGGAACTCAGGGTTACAATTGGATAACGTAAATAATTCTTT
CATAGCAATATGCTGAATATCTTGAGATGGAGAAAAAGCTTTTGATCGAA
ATGGGATTGCTGGTTGAATCTATGGAGTAAAGAAAGAGACAAAGTGAAAG
AGAAGAAGAAatgtaaatattcaaaaattgttgATACATAATTTAACTTG
TTGATATGTTGTATGGATCAAggtaaaatttcatttattgATCGTTTTCT
GTTCTGACAGTTTATTGATCGTTTTTGGTTTTGACGGAGACCACTTAACT
TCTTCGTGTCATATTATATAATATGgagttttcaaatttgaatgGTAGAG
TTTCTTCATAAGACTTTGGATTTATTGGAGTACAATGGATGATCTTTTCG
AATTTATTTCATCTGAACATTCctactttgaaaaatattgaaaaagagAT
TGATTGATTTTAATGGTTTGATTTGCGATGGTTGGGCATTGAATCTAAAC
CAATCACCGCCGTTAATACTATTCCAGAAAGTTTTTCATCTTAAAACAAT
CAATGATGGATCTTCTGTATTCACCAGACATGACAACGATGAAAAGACTT
ATGAAACCATTTCAAACAGGGTCAATGATACTGGGTCATTTTCTTTGATT
AAATCCAAAGAGCTTTGGCCCGTTTTTTCGTATAATCTGACAAGGATGAT
TTGATTTGCTGTATATAAAAATTGATGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011421XLOC_011421Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020345-exon-sc0000354-1491911889:123679..123797TCONS_00020345-exon-sc0000354-1491911889:123679..123797Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:123679..123797TCONS_00020345-exon-sc0000354-1510915933:123679..123797Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:123679..123797TCONS_00020345-exon-sc0000354-1575043694:123679..123797Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:124036..124166TCONS_00020345-exon-sc0000354-1491911889:124036..124166Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:124036..124166TCONS_00020345-exon-sc0000354-1510915933:124036..124166Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:124036..124166TCONS_00020345-exon-sc0000354-1575043694:124036..124166Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:124510..124583TCONS_00020345-exon-sc0000354-1491911889:124510..124583Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:124510..124583TCONS_00020345-exon-sc0000354-1510915933:124510..124583Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:124510..124583TCONS_00020345-exon-sc0000354-1575043694:124510..124583Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:125197..125288TCONS_00020345-exon-sc0000354-1491911889:125197..125288Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:125197..125288TCONS_00020345-exon-sc0000354-1510915933:125197..125288Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:125197..125288TCONS_00020345-exon-sc0000354-1575043694:125197..125288Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:126262..126372TCONS_00020345-exon-sc0000354-1491911889:126262..126372Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:126262..126372TCONS_00020345-exon-sc0000354-1510915933:126262..126372Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:126262..126372TCONS_00020345-exon-sc0000354-1575043694:126262..126372Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:127317..127364TCONS_00020345-exon-sc0000354-1491911889:127317..127364Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:127317..127364TCONS_00020345-exon-sc0000354-1510915933:127317..127364Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:127317..127364TCONS_00020345-exon-sc0000354-1575043694:127317..127364Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1491911889:127584..128259TCONS_00020345-exon-sc0000354-1491911889:127584..128259Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1510915933:127584..128259TCONS_00020345-exon-sc0000354-1510915933:127584..128259Clytia hemisphaericaexon
TCONS_00020345-exon-sc0000354-1575043694:127584..128259TCONS_00020345-exon-sc0000354-1575043694:127584..128259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000354supercontigsc0000354:123679..128259 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87905	4.95564	6.88181	5.4411	0	0	0	0	3.25764	4.6258	3.04342	2.68496	0.589161	0.342473	0	0.0733504	0.431941	0.593891	0	0.573213	0.413429	0.0551368	0	1.10497	0	0	0	1.09918	0.718907	0.60378
Blast
[Close]
BLAST of TCONS_00020345 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.405e-53
Identity = 91/209 (43.54%), Postives = 131/209 (62.68%), Query Frame = 3 
Query:   18 HDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGITFGPLIQSYPHDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLD---KTRGQNSLPTSIKV-DSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLIEMGLL 632
            HD T++T+Q+SPF   I LTVGGW  +IWK+G+  GPL+QS     + TSG WS +RP VF+IG+ DG ID+WDLL+K+HEP  +QN+    I  + P+  S KQQ +A  D  GTLH++E+PW L   +TNE+ +  HY +RE   LE ++   K R Q      +++   K    Q+++E+     K  Y  YLE+EK +LI +GL+
Sbjct:  671 HDGTVHTIQRSPFYNDIILTVGGWNVAIWKEGVMTGPLLQSCCAPKRYTSGHWSLTRPGVFYIGREDGYIDIWDLLEKTHEPAQSQNICITMITYIKPWIFSSKQQFIATADYYGTLHILEIPWTLSRPSTNEMASVNHYFEREVKHLEYVEQRKKIREQEKKEMELEMAKKKVKTYQKSKEQMQAELKMDYESYLELEKTVLINLGLI 879
The following BLAST results are available for this feature:
BLAST of TCONS_00020345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR634.405e-5343.54WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
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