TCONS_00020350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020350
Unique NameTCONS_00020350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020350 ID=TCONS_00020350|Name=TCONS_00020350|organism=Clytia hemisphaerica|type=transcript|length=1635bp
gaaaaaaataataaaaaaataataaaataatactGCAAAAATGGCATCGA
ACGAGGATTTTGAAGAAATGGCACCCTCCATCCAACATTTATTGGATCAA
AAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCGTTGGTAAGAC
AACTTGCAGTTGTAGTGTTGCAATCCAGCTTGCTAAGCATAAGAAAAATG
TTCTCATCATTTCAACTGATCCTGCACATAACATTTCCGATGCTTTCGAC
CAAAAATTTGGTAGAAAACCAACTGCTGTTAAAGGATTCACAAATCTATT
CGCGATGgaaattgatCCAAATCTTGGGTTAACAAAACTTCCAGAAGATG
TTCTCGAGGACCAGGACTTCATGTCAATGGGAGGAAAGATGTTTCAAGAC
TTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAATGAGTTTTGCTGAAGT
CATGAAACTGGTTCGCAGCATGGATTTCTCTGTCGTCGTATTCGATACAG
CTCCAACAGGGCACACGCTTCGCTTAATATCCTTTCCCAGCGTCATGGAG
AAATCTTTGGAGAAATTACTGGCACTAAAATCACGTATACAACCTATGAT
TCAACAGTTCAGCACACTCCTCGGGATGCAAGATATGAACATAGAACAAT
TCACATCGAGGCTGGATGAAACACTACCAGTTATTAAAGAAGTATCGGCC
CAATTCCAAAACCCTgaCCACACTACATTCGTCTGTGTTTGCATCTCAGA
ATTCCTTTCTCTCTACGAAACAGAACATCTTGTACAAGAACTCACAAAAA
TGAATATGGACATTCGAACTATCATCGTAAATCAACTGGTCTTTCCTAAG
AAATTACAAGGAgGTTCAGCATGCGATTTATGTTCAGCAAGGTCAAATAT
ACAAAAGAAGTACTTAGAAGAAATAGCAGATTTATATGAAGACTTCCACG
TGATCAAGTTACCGCTTCTACCGAAAGAAGTTCGTGGACCACAGCAAATT
GAAACCTTCTCTGATTGGCTAATCAACCCTTATCAACCACCGTCGTAACA
ATNGTAGTAGAATTTCATTAACGGATTTGATAGGCGTCTTTTAAGGGTTG
GATAGATATTTTTTCCCTATGCCAGGTTAATTACAATTGCAGCAAGCTCT
GCTTCAAAGAGACGATCGATtgataaatatttttccttAGGTTAGATTAA
TTAcaattgcaaaaaaataagcTCTACTTTGGACGAtcgactttttgatt
tttgttttttgaccgaaattcagCTTAAAGGTCCAAGTACCATTTTTAGG
GTGGTTCACAAGAGAGTCAACCTTAAAGCGTCTGACTAAATTTTGCAATC
ACGAACAATattcaatttaaaatttcaatttcaaaatatttataactttt
tcaataatttttttttctcattcataatattttttttgttttgtttttta
attttggaaaatgaatttattactttaaaatatttagatttaaaattttC
GGTTAAGTTATATGTTGCATAACGTGAGATAATACGCGTTTATACAAATG
TGGTGAAATATTGCGCTTATTGATGTAGTTTCTGGGCTTGATACCATGCA
aaactagactagagtctacttctgaccgAGTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00020350-protein

>TCONS_00020350-protein ID=TCONS_00020350-protein|Name=TCONS_00020350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MASNEDFEEMAPSIQHLLDQKELRWVFVGGKGGVGKTTCSCSVAIQLAKH
KKNVLIISTDPAHNISDAFDQKFGRKPTAVKGFTNLFAMEIDPNLGLTKL
PEDVLEDQDFMSMGGKMFQDLLGAFPGIDEAMSFAEVMKLVRSMDFSVVV
FDTAPTGHTLRLISFPSVMEKSLEKLLALKSRIQPMIQQFSTLLGMQDMN
IEQFTSRLDETLPVIKEVSAQFQNPDHTTFVCVCISEFLSLYETEHLVQE
LTKMNMDIRTIIVNQLVFPKKLQGGSACDLCSARSNIQKKYLEEIADLYE
DFHVIKLPLLPKEVRGPQQIETFSDWLINPYQPPS
Run BLAST on NCBI

transcript from alignment at sc0000354:273840..279780+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020350 ID=TCONS_00020350|Name=TCONS_00020350|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0000354:273840..279780+ (Clytia hemisphaerica)
gaaaaaaataataaaaaaataataaaataatactGCAAAAATGGCATCGA
ACGAGGATTTTGAAGAAATGGCACCCTCCATCCAACATTTATTGGATCAA
AAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCGTTGGTAAGAC
AACTTGCAGGTATGGCGAGAAATATTTAGAAAGATGTTGAATGAGATTGT
TATTGCATTGTCTATTATTCTTTACATGGGACTAAGATGTTTTGTATtag
tctttaaaaattcttccGGCCTTACCCAGTTTGTAAGTTCAattttgatt
gatatttttgtCATGAAATAGTTTTGAGGGTTTTGTTTGTTAAAGAcctt
ttgaaataatttcttaCCTTCAAGACTGTTCATTGAAATATAAGATGAAA
ACACTCTgtatttttcctcaaaaattgacttcattTGACGTATCTCCCTC
catttgggacaagctggagtttttacaagctcttatttgatttggttggt
cgttgaccagtaataaaacaattttgttactttttctaaagaacgcgtca
tctctatcacttcaaatgaccaattagtgaagtatcttataaaaactccA
GCTCATTCCCTccatttgtttacatttttaaacaaaaagaaaaacaaatt
tttctcccttccaCACCGGACGAGCAcaaattttgagcaattctatCATT
TATATTCTGCTTTGTGAGCATATAGAGACGCCTCTattctatatcataaa
aaaagatATCTTTAAAGTGTTCGTTTTCTTTACTGCAGTTGTAGTGTTGC
AATCCAGCTTGCTAAGCATAAGAAAAATGTTCTCATCATTTCAACTGATC
CTGCACATAACATTTCCGATGCTTTCGACCAAAAATTTGGTAGAAAACCA
ACTGCTGTTAAAGGATTCACAAATCTATTCGCGATGGTTAGTTTTATTGA
GATATTCTATGTGAATTTTTTGATCTCATAATGTATTTGTTCCGAAATAA
GATCAgtgccattgagtttcaagcccgaagagctagagaCGAGACTATTG
GATGGGAAATGCCCATCCtacgcccgcgcgtagtttttacacaaacgccg
gattgaaactaaaatatatcgttagatttcaaaaaatgtagtcctccaaa
acaaaggattcgctagatacaatccgtcgtcatgattacggcgtgTTCTA
tgtgcgttttggatgggaaataagtggcttcaatttctcttgcctgagta
GGGTTAAAGTTTAcgtctctagcccttcggactttaaACTCAACGATCAG
TGCTCACAAAATCCAGGCTAATTTGTTGTGTTGGAGTCTATTTTCTGTTT
GGGATGCAAAGCTTTGCTTTGACTAAACTGATAAGATATAAACAGTGTTG
TAATAAATTGGTTATCTAATTAGTATTATAGTCATCTACActtttttctt
aggaaattgatCCAAATCTTGGGTTAACAAAACTTCCAGAAGATGTTCTC
GAGGACCAGGGTAGAGTATCGATTTTTTATCTTTGGGTTATCGTGATTTC
TGATTAAGTTTCTATGAATAAAGGGTTCTGCTGGACTAATTATAGAggtt
gttctttttttgttaaaCCTTTACGCAAAAACTCTTCCAATTGGATGCcc
actttctgcctactctGACAATTAGAATAGatagggcagaaagtcggccg
tctataAGCTAGAAGTCATTAagaccggtctccacttgcacgCGCTGCAA
Tctcactttttggcttcaatcgggcttcaatcctttttgcttgggaaaaa
gattacgtcataaaaatgtagcgcgcgcttgaaaaaaaagttaaacacat
ttcaacttttttcagccgttacgtcagatcgcgccaatggaactcgcgca
agtggagaccggcctttagatttactttgaaatagattttcgaTCTCATA
ATCTTTTTGTGCTGTTTTACAGACTTCATGTCAATGGGAGGAAAGATGTT
TCAAGACTTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAATGAGTTTTG
CTGAAGTCATGAAGTGAGTATTGCTTCCCATTTATTATACCCTTTGTACA
GTGtattctccataactcgaacacgtgCAGAGAACACAcatttgttcgat
ttaaggaaATAAatagtaaggtttataaggcattgttgaNGAATAACACA
catttgttcgatttaaggaaATAAatagtaaggtttataaggcattgttt
acttgttcgagttatagaggttcaaatAATTTAGAGACAATAATCATAAA
GAATGGTTCACTGTAAAAGTATTATCATTTCAAccaattatttttacata
acTCTCTACCAGACTGGTTCGCAGCATGGATTTCTCTGTCGTCGTATTCG
ATACAGCTCCAACAGGGCACACGCTTCGCTTAATATCCTTTCCCAGCGTC
ATGGAGAAATCTTTGGAGAAATTACTGGCACTAAAATCACGTATACAACC
TATGATTCAACAGGTTAGTGTAACATGGTGTTAAGAACTTTGTTCATAGT
GTGCAAAGTAGAGTACTTTTacgcgtacaaactttcgcgggcagacTTTC
GCGGTTTCCacaaattttggcccttttcgccaATTCTCGGAAGGGCCATC
CGCGAAAGTTTTTGCTCGCGAAAATGTTttgacaaaatataaaatttgta
aaactttaaactttgaaTCAAatgtattttgttattttttagcctattag
tactagtaataacatggtttagagggtgatttgggattaataaccccgag
gttcattgaaaatatttcaaaatagcccgaacgtagtgagggctattttg
aagtgttttcaatgaaacgaaCTTTCTCATTCTATAGTTCAGCACACTCC
TCGGGATGCAAGATATGAACATAGAACAATTCACATCGAGGCTGGATGAA
ACACTACCAGTTATTAAAGAAGTATCGGCCCAATTCCAAAACCCTGTAAG
ACTCGAAAAATCATAGAcacccagctggtacacaacgttgtttcatcgtt
atctaacgttcacaacgtccatacaacgttaaatgaacgttgaaacaacg
ttgtgtgccagctgggcatgTATTTTAATcggatttattttcaaaagact
tcattttgcttttttgcggcaaaattttgagattagGATTTCAGGATTAT
TGTTATCAGATTTTTGGCTGATTCTCGAAATTAAATCAATATTCATTTCT
AGTggtttaaagggataatcagatggtctgagatattttgcctgcagata
gcttctaggattttaggaaaaacctctaaatttcttggtgtatttatttt
tttaactcaagttatgccacctttgcttgaaaacaatagaaaaaagtgtg
aaaagtccctgaaaagtcccatttttcgagatttcaaattggcataactt
gagttaagaaaataaatacaccgagaaatttagaggtttttcctaaaatt
ctAGAAGCTATgtatctgcaggcaaaatatctcagaccatctgattatcc
ctttaagtaaACTTTCTGCTTGTAGCTTGTATCACAGCTGTGATTTGGTT
TTATTCGATCGTCTTATCTGTATTCTGCGAGTTTGAGCCCATTGGAAAGA
TTGATACAACAGTTCATTACAAGCACAAAGAAATCACCCCACACAAATCC
GAAAAAGAGATGGTTGgtctttgaaaagtttttttgttttagattaGTTC
TTGTTTGATAGGATTCTTCACTATGCAATaccttttttcaatattttcag
gaCCACACTACATTCGTCTGTGTTTGCATCTCAGAATTCCTTTCTCTCTA
CGAAACAGAACATCTTGTACAAGAACTCACAAAAATGAATATGGACATTC
GAACTATCATCGTAAATCAACTGGTCTTTCCTAAGAAATTACAAGGAggt
atttttgatttgttttgattataaaGTAGTGGTTAAAatagtagcgagtt
tatgtttTTGCATTTTGGACGACGGTAGTGTGACTGAAGCGATTgggaaa
aacccgcagttttgacccacaaaatcgaggacggtagaTGTGCTGATTTA
CTGTCGTAATCAGTCAGTTAGGGTGTAGAGAAATTAGAAACTCACAAATT
ACAAGAACTCACCAAAATGAATATGGATATTCGAACTATCATCGTCAACC
AACTggtttttcctaagaaaatacaaggagatattttggtttgttttgat
tataaaGTAGTAGTTGAAatagtagcgagtttatgtgtTTGCATTTTGGA
CGACGGTGGGtcaaaacccgcagttttgacccgcaaaatcgagtaCGGTA
AATGTGctgtttaccgtcgtcctcagtcagggTGTAGAGAAATTAGAAAC
TCGCCGTCTCCGTCACAGGAAGACAcatatacataaactcgctaatgtca
AGTTAACACTCAGAACGATATTCATTGGAAATGCTGAATACAAGAAAATT
ATAAAGGGAGGACATTCGGCTACGTTTCAACAGGTTTTCAGCCGGGTCAT
GCTATGAACTCAagaaaatggtacttgatgcctctcttcCTCTGCGCCCA
CCCCTATGCTCGGGTAAGCAGCTAAAAGTGCGGTCGCAATTTTCTTACCA
CATCAAGTTCGAGCACTCTACCCAGTGCCAGGGTCATACAGTCAGaaaca
tggcgttctaaatctacagGCCTATCAAGCGGGCAGACACTTaaattttt
gaagtcgttgcattgatgCTTGTACAAAATGTACTATTGAGCGAGAATTG
CTAGACCTGGAACGTCATGGTCATAGAGGATTGATGTTCGTATTCAaact
ttatcatttttaatcttttagGTTCAGCATGCGATTTATGTTCAGCAAGG
TCAAATATACAAAAGAAGTACTTAGAAGAAGTAAGACTTATTTTCAACAA
CCCTGGCAATTTTTCACTGACTCAAACCCTCTTTATTTTTGGCCTGTGAT
TGGGCTTTTCCCGTACCGCCCCCCTCACCAAATTTATTGGCTTGTTTTCA
TTAGATAGCAGATTTATATGAAGACTTCCACGTGATCAAGTTACCGCTTC
TACCGAAAGAAGTTCGTGGACCACAGCAAATTGAAACCTTCTCTGATTGG
CTAATCAACCCTTATCAACCACCGTCGTAACAGTTCTAGTAGAATTTCAT
TAACGGATTTGATAGGATCTTTTAAGGgttggataaatattttttccctA
TGCCAGGTTAATTACAATTGCAGCAAGCTCTGCTTCAGAGAGACGATCGA
ATCTTtgttaaataattttccttatttCGGATTAATTACAATTGCAACAA
GATAAGATNGTAGTAGAATTTCATTAACGGATTTGATAGGCGTCTTTTAA
GGGTTGGATAGATATTTTTTCCCTATGCCAGGTTAATTACAATTGCAGCA
AGCTCTGCTTCAAAGAGACGATCGATtgataaatatttttccttAGGTTA
GATTAATTAcaattgcaaaaaaataagcTCTACTTTGGACGAtcgacttt
ttgatttttgttttttgaccgaaattcagCTTAAAGGTCCAAGTACCATT
TTTAGGGTGGTTCACAAGAGAGTCAACCTTAAAGCGTCTGACTAAATTTT
GCAATCACGAACAATattcaatttaaaatttcaatttcaaaatatttata
actttttcaataatttttttttctcattcataatattttttttgttttgt
tttttaattttggaaaatgaatttattactttaaaatatttagatttaaa
attttCGGTTAAGTTATATGTTGCATAACGTGAGATAATACGCGTTTATA
CAAATGTGGTGAAATATTGCGCTTATTGATGTAGTTTCTGGGCTTGATAC
CATGCAaaactagactagagtctacttctgaccgAGTTTTG

Coding sequence (CDS) from alignment at sc0000354:273840..279780+

>TCONS_00020350 ID=TCONS_00020350|Name=TCONS_00020350|organism=Clytia hemisphaerica|type=CDS|length=9072bp|location=Sequence derived from alignment at sc0000354:273840..279780+ (Clytia hemisphaerica)
ATGGCATCGAACGAGGATTTTGAAGAAATGGCACCCTCCATCCAACATTT
ATTGGATCAAAAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCG
TTGGTAAGACAACTTGCAGTTGTAGTGTTGCAATCCAGCTTGCTAAGCAT
AAGAAAAATGTTCTCATCATTTCAACTGATCCTGCACATAACATTTCCGA
TGCTTTCGACCAAAAATTTGGTAGAAAACCAACTGCTGTTAAAGGATTCA
CAAATCTATTCGCGATGgaaattgatCCAAATCTTGGGTTAACAAAACTT
CCAGAAGATGTTCTCGAGGACCAGGACTTCATGTCAATGGGAGGAAAGAT
GTTTCAAGACTTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAATGAGTT
TTGCTGAAGTCATGAAACTGGTTCGCAGCATGGATTTCTCTGTCGTCGTA
TTCGATACAGCTCCAACAGGGCACACGCTTCGCTTAATATCCTTTCCCAG
CGTCATGGAGAAATCTTTGGAGAAATTACTGGCACTAAAATCACGTATAC
AACCTATGATTCAACAGTTCAGCACACTCCTCGGGATGCAAGATATGAAC
ATAGAACAATTCACATCGAGGCTGGATGAAACACTACCAGTTATTAAAGA
AGTATCGGCCCAATTCCAAAACCCTgaCCACACTACATTCGTCTGTGTTT
GCATCTCAGAATTCCTTTCTCTCTACGAAACAGAACATCTTGTACAAGAA
CTCACAAAAATGAATATGGACATTCGAACTATCATCGTAAATCAACTGGT
CTTTCCTAAGAAATTACAAGGAgGTTCAGCATGCGATTTATGTTCAGCAA
GGTCAAATATACAAAAGAAGTACTTAGAAGAAATAGCAGATTTATATGAA
GACTTCCACGTGATCAAGTTACCGCTTCTACCGAAAGAAGTTCGTGGACC
ACAGCAAATTGAAACCTTCTCTGATTGGCTAATCAACCCTTATCAACCAC
CGTCGTAAATGGCATCGAACGAGGATTTTGAAGAAATGGCACCCTCCATC
CAACATTTATTGGATCAAAAAGAATTACGCTGGGTGTTTGTTGGTGGTAA
AGGGGGCGTTGGTAAGACAACTTGCAGTTGTAGTGTTGCAATCCAGCTTG
CTAAGCATAAGAAAAATGTTCTCATCATTTCAACTGATCCTGCACATAAC
ATTTCCGATGCTTTCGACCAAAAATTTGGTAGAAAACCAACTGCTGTTAA
AGGATTCACAAATCTATTCGCGATGgaaattgatCCAAATCTTGGGTTAA
CAAAACTTCCAGAAGATGTTCTCGAGGACCAGGACTTCATGTCAATGGGA
GGAAAGATGTTTCAAGACTTGTTGGGGGCTTTCCCGGGAATCGACGAAGC
AATGAGTTTTGCTGAAGTCATGAAACTGGTTCGCAGCATGGATTTCTCTG
TCGTCGTATTCGATACAGCTCCAACAGGGCACACGCTTCGCTTAATATCC
TTTCCCAGCGTCATGGAGAAATCTTTGGAGAAATTACTGGCACTAAAATC
ACGTATACAACCTATGATTCAACAGTTCAGCACACTCCTCGGGATGCAAG
ATATGAACATAGAACAATTCACATCGAGGCTGGATGAAACACTACCAGTT
ATTAAAGAAGTATCGGCCCAATTCCAAAACCCTgaCCACACTACATTCGT
CTGTGTTTGCATCTCAGAATTCCTTTCTCTCTACGAAACAGAACATCTTG
TACAAGAACTCACAAAAATGAATATGGACATTCGAACTATCATCGTAAAT
CAACTGGTCTTTCCTAAGAAATTACAAGGAgGTTCAGCATGCGATTTATG
TTCAGCAAGGTCAAATATACAAAAGAAGTACTTAGAAGAAATAGCAGATT
TATATGAAGACTTCCACGTGATCAAGTTACCGCTTCTACCGAAAGAAGTT
CGTGGACCACAGCAAATTGAAACCTTCTCTGATTGGCTAATCAACCCTTA
TCAACCACCGTCGTAAATGGCATCGAACGAGGATTTTGAAGAAATGGCAC
CCTCCATCCAACATTTATTGGATCAAAAAGAATTACGCTGGGTGTTTGTT
GGTGGTAAAGGGGGCGTTGGTAAGACAACTTGCAGTTGTAGTGTTGCAAT
CCAGCTTGCTAAGCATAAGAAAAATGTTCTCATCATTTCAACTGATCCTG
CACATAACATTTCCGATGCTTTCGACCAAAAATTTGGTAGAAAACCAACT
GCTGTTAAAGGATTCACAAATCTATTCGCGATGgaaattgatCCAAATCT
TGGGTTAACAAAACTTCCAGAAGATGTTCTCGAGGACCAGGACTTCATGT
CAATGGGAGGAAAGATGTTTCAAGACTTGTTGGGGGCTTTCCCGGGAATC
GACGAAGCAATGAGTTTTGCTGAAGTCATGAAACTGGTTCGCAGCATGGA
TTTCTCTGTCGTCGTATTCGATACAGCTCCAACAGGGCACACGCTTCGCT
TAATATCCTTTCCCAGCGTCATGGAGAAATCTTTGGAGAAATTACTGGCA
CTAAAATCACGTATACAACCTATGATTCAACAGTTCAGCACACTCCTCGG
GATGCAAGATATGAACATAGAACAATTCACATCGAGGCTGGATGAAACAC
TACCAGTTATTAAAGAAGTATCGGCCCAATTCCAAAACCCTgaCCACACT
ACATTCGTCTGTGTTTGCATCTCAGAATTCCTTTCTCTCTACGAAACAGA
ACATCTTGTACAAGAACTCACAAAAATGAATATGGACATTCGAACTATCA
TCGTAAATCAACTGGTCTTTCCTAAGAAATTACAAGGAgGTTCAGCATGC
GATTTATGTTCAGCAAGGTCAAATATACAAAAGAAGTACTTAGAAGAAAT
AGCAGATTTATATGAAGACTTCCACGTGATCAAGTTACCGCTTCTACCGA
AAGAAGTTCGTGGACCACAGCAAATTGAAACCTTCTCTGATTGGCTAATC
AACCCTTATCAACCACCGTCGTAAATGGCATCGAACGAGGATTTTGAAGA
AATGGCACCCTCCATCCAACATTTATTGGATCAAAAAGAATTACGCTGGG
TGTTTGTTGGTGGTAAAGGGGGCGTTGGTAAGACAACTTGCAGTTGTAGT
GTTGCAATCCAGCTTGCTAAGCATAAGAAAAATGTTCTCATCATTTCAAC
TGATCCTGCACATAACATTTCCGATGCTTTCGACCAAAAATTTGGTAGAA
AACCAACTGCTGTTAAAGGATTCACAAATCTATTCGCGATGgaaattgat
CCAAATCTTGGGTTAACAAAACTTCCAGAAGATGTTCTCGAGGACCAGGA
CTTCATGTCAATGGGAGGAAAGATGTTTCAAGACTTGTTGGGGGCTTTCC
CGGGAATCGACGAAGCAATGAGTTTTGCTGAAGTCATGAAACTGGTTCGC
AGCATGGATTTCTCTGTCGTCGTATTCGATACAGCTCCAACAGGGCACAC
GCTTCGCTTAATATCCTTTCCCAGCGTCATGGAGAAATCTTTGGAGAAAT
TACTGGCACTAAAATCACGTATACAACCTATGATTCAACAGTTCAGCACA
CTCCTCGGGATGCAAGATATGAACATAGAACAATTCACATCGAGGCTGGA
TGAAACACTACCAGTTATTAAAGAAGTATCGGCCCAATTCCAAAACCCTg
aCCACACTACATTCGTCTGTGTTTGCATCTCAGAATTCCTTTCTCTCTAC
GAAACAGAACATCTTGTACAAGAACTCACAAAAATGAATATGGACATTCG
AACTATCATCGTAAATCAACTGGTCTTTCCTAAGAAATTACAAGGAgGTT
CAGCATGCGATTTATGTTCAGCAAGGTCAAATATACAAAAGAAGTACTTA
GAAGAAATAGCAGATTTATATGAAGACTTCCACGTGATCAAGTTACCGCT
TCTACCGAAAGAAGTTCGTGGACCACAGCAAATTGAAACCTTCTCTGATT
GGCTAATCAACCCTTATCAACCACCGTCGTAAATGGCATCGAACGAGGAT
TTTGAAGAAATGGCACCCTCCATCCAACATTTATTGGATCAAAAAGAATT
ACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCGTTGGTAAGACAACTTGCA
GTTGTAGTGTTGCAATCCAGCTTGCTAAGCATAAGAAAAATGTTCTCATC
ATTTCAACTGATCCTGCACATAACATTTCCGATGCTTTCGACCAAAAATT
TGGTAGAAAACCAACTGCTGTTAAAGGATTCACAAATCTATTCGCGATGg
aaattgatCCAAATCTTGGGTTAACAAAACTTCCAGAAGATGTTCTCGAG
GACCAGGACTTCATGTCAATGGGAGGAAAGATGTTTCAAGACTTGTTGGG
GGCTTTCCCGGGAATCGACGAAGCAATGAGTTTTGCTGAAGTCATGAAAC
TGGTTCGCAGCATGGATTTCTCTGTCGTCGTATTCGATACAGCTCCAACA
GGGCACACGCTTCGCTTAATATCCTTTCCCAGCGTCATGGAGAAATCTTT
GGAGAAATTACTGGCACTAAAATCACGTATACAACCTATGATTCAACAGT
TCAGCACACTCCTCGGGATGCAAGATATGAACATAGAACAATTCACATCG
AGGCTGGATGAAACACTACCAGTTATTAAAGAAGTATCGGCCCAATTCCA
AAACCCTgaCCACACTACATTCGTCTGTGTTTGCATCTCAGAATTCCTTT
CTCTCTACGAAACAGAACATCTTGTACAAGAACTCACAAAAATGAATATG
GACATTCGAACTATCATCGTAAATCAACTGGTCTTTCCTAAGAAATTACA
AGGAgGTTCAGCATGCGATTTATGTTCAGCAAGGTCAAATATACAAAAGA
AGTACTTAGAAGAAATAGCAGATTTATATGAAGACTTCCACGTGATCAAG
TTACCGCTTCTACCGAAAGAAGTTCGTGGACCACAGCAAATTGAAACCTT
CTCTGATTGGCTAATCAACCCTTATCAACCACCGTCGTAAATGGCATCGA
ACGAGGATTTTGAAGAAATGGCACCCTCCATCCAACATTTATTGGATCAA
AAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCGTTGGTAAGAC
AACTTGCAGTTGTAGTGTTGCAATCCAGCTTGCTAAGCATAAGAAAAATG
TTCTCATCATTTCAACTGATCCTGCACATAACATTTCCGATGCTTTCGAC
CAAAAATTTGGTAGAAAACCAACTGCTGTTAAAGGATTCACAAATCTATT
CGCGATGgaaattgatCCAAATCTTGGGTTAACAAAACTTCCAGAAGATG
TTCTCGAGGACCAGGACTTCATGTCAATGGGAGGAAAGATGTTTCAAGAC
TTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAATGAGTTTTGCTGAAGT
CATGAAACTGGTTCGCAGCATGGATTTCTCTGTCGTCGTATTCGATACAG
CTCCAACAGGGCACACGCTTCGCTTAATATCCTTTCCCAGCGTCATGGAG
AAATCTTTGGAGAAATTACTGGCACTAAAATCACGTATACAACCTATGAT
TCAACAGTTCAGCACACTCCTCGGGATGCAAGATATGAACATAGAACAAT
TCACATCGAGGCTGGATGAAACACTACCAGTTATTAAAGAAGTATCGGCC
CAATTCCAAAACCCTgaCCACACTACATTCGTCTGTGTTTGCATCTCAGA
ATTCCTTTCTCTCTACGAAACAGAACATCTTGTACAAGAACTCACAAAAA
TGAATATGGACATTCGAACTATCATCGTAAATCAACTGGTCTTTCCTAAG
AAATTACAAGGAgGTTCAGCATGCGATTTATGTTCAGCAAGGTCAAATAT
ACAAAAGAAGTACTTAGAAGAAATAGCAGATTTATATGAAGACTTCCACG
TGATCAAGTTACCGCTTCTACCGAAAGAAGTTCGTGGACCACAGCAAATT
GAAACCTTCTCTGATTGGCTAATCAACCCTTATCAACCACCGTCGTAAAT
GGCATCGAACGAGGATTTTGAAGAAATGGCACCCTCCATCCAACATTTAT
TGGATCAAAAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAGGGGGCGTT
GGTAAGACAACTTGCAGTTGTAGTGTTGCAATCCAGCTTGCTAAGCATAA
GAAAAATGTTCTCATCATTTCAACTGATCCTGCACATAACATTTCCGATG
CTTTCGACCAAAAATTTGGTAGAAAACCAACTGCTGTTAAAGGATTCACA
AATCTATTCGCGATGgaaattgatCCAAATCTTGGGTTAACAAAACTTCC
AGAAGATGTTCTCGAGGACCAGGACTTCATGTCAATGGGAGGAAAGATGT
TTCAAGACTTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAATGAGTTTT
GCTGAAGTCATGAAACTGGTTCGCAGCATGGATTTCTCTGTCGTCGTATT
CGATACAGCTCCAACAGGGCACACGCTTCGCTTAATATCCTTTCCCAGCG
TCATGGAGAAATCTTTGGAGAAATTACTGGCACTAAAATCACGTATACAA
CCTATGATTCAACAGTTCAGCACACTCCTCGGGATGCAAGATATGAACAT
AGAACAATTCACATCGAGGCTGGATGAAACACTACCAGTTATTAAAGAAG
TATCGGCCCAATTCCAAAACCCTgaCCACACTACATTCGTCTGTGTTTGC
ATCTCAGAATTCCTTTCTCTCTACGAAACAGAACATCTTGTACAAGAACT
CACAAAAATGAATATGGACATTCGAACTATCATCGTAAATCAACTGGTCT
TTCCTAAGAAATTACAAGGAgGTTCAGCATGCGATTTATGTTCAGCAAGG
TCAAATATACAAAAGAAGTACTTAGAAGAAATAGCAGATTTATATGAAGA
CTTCCACGTGATCAAGTTACCGCTTCTACCGAAAGAAGTTCGTGGACCAC
AGCAAATTGAAACCTTCTCTGATTGGCTAATCAACCCTTATCAACCACCG
TCGTAAATGGCATCGAACGAGGATTTTGAAGAAATGGCACCCTCCATCCA
ACATTTATTGGATCAAAAAGAATTACGCTGGGTGTTTGTTGGTGGTAAAG
GGGGCGTTGGTAAGACAACTTGCAGTTGTAGTGTTGCAATCCAGCTTGCT
AAGCATAAGAAAAATGTTCTCATCATTTCAACTGATCCTGCACATAACAT
TTCCGATGCTTTCGACCAAAAATTTGGTAGAAAACCAACTGCTGTTAAAG
GATTCACAAATCTATTCGCGATGgaaattgatCCAAATCTTGGGTTAACA
AAACTTCCAGAAGATGTTCTCGAGGACCAGGACTTCATGTCAATGGGAGG
AAAGATGTTTCAAGACTTGTTGGGGGCTTTCCCGGGAATCGACGAAGCAA
TGAGTTTTGCTGAAGTCATGAAACTGGTTCGCAGCATGGATTTCTCTGTC
GTCGTATTCGATACAGCTCCAACAGGGCACACGCTTCGCTTAATATCCTT
TCCCAGCGTCATGGAGAAATCTTTGGAGAAATTACTGGCACTAAAATCAC
GTATACAACCTATGATTCAACAGTTCAGCACACTCCTCGGGATGCAAGAT
ATGAACATAGAACAATTCACATCGAGGCTGGATGAAACACTACCAGTTAT
TAAAGAAGTATCGGCCCAATTCCAAAACCCTgaCCACACTACATTCGTCT
GTGTTTGCATCTCAGAATTCCTTTCTCTCTACGAAACAGAACATCTTGTA
CAAGAACTCACAAAAATGAATATGGACATTCGAACTATCATCGTAAATCA
ACTGGTCTTTCCTAAGAAATTACAAGGAgGTTCAGCATGCGATTTATGTT
CAGCAAGGTCAAATATACAAAAGAAGTACTTAGAAGAAATAGCAGATTTA
TATGAAGACTTCCACGTGATCAAGTTACCGCTTCTACCGAAAGAAGTTCG
TGGACCACAGCAAATTGAAACCTTCTCTGATTGGCTAATCAACCCTTATC
AACCACCGTCGTAAATGGCATCGAACGAGGATTTTGAAGAAATGGCACCC
TCCATCCAACATTTATTGGATCAAAAAGAATTACGCTGGGTGTTTGTTGG
TGGTAAAGGGGGCGTTGGTAAGACAACTTGCAGTTGTAGTGTTGCAATCC
AGCTTGCTAAGCATAAGAAAAATGTTCTCATCATTTCAACTGATCCTGCA
CATAACATTTCCGATGCTTTCGACCAAAAATTTGGTAGAAAACCAACTGC
TGTTAAAGGATTCACAAATCTATTCGCGATGgaaattgatCCAAATCTTG
GGTTAACAAAACTTCCAGAAGATGTTCTCGAGGACCAGGACTTCATGTCA
ATGGGAGGAAAGATGTTTCAAGACTTGTTGGGGGCTTTCCCGGGAATCGA
CGAAGCAATGAGTTTTGCTGAAGTCATGAAACTGGTTCGCAGCATGGATT
TCTCTGTCGTCGTATTCGATACAGCTCCAACAGGGCACACGCTTCGCTTA
ATATCCTTTCCCAGCGTCATGGAGAAATCTTTGGAGAAATTACTGGCACT
AAAATCACGTATACAACCTATGATTCAACAGTTCAGCACACTCCTCGGGA
TGCAAGATATGAACATAGAACAATTCACATCGAGGCTGGATGAAACACTA
CCAGTTATTAAAGAAGTATCGGCCCAATTCCAAAACCCTgaCCACACTAC
ATTCGTCTGTGTTTGCATCTCAGAATTCCTTTCTCTCTACGAAACAGAAC
ATCTTGTACAAGAACTCACAAAAATGAATATGGACATTCGAACTATCATC
GTAAATCAACTGGTCTTTCCTAAGAAATTACAAGGAgGTTCAGCATGCGA
TTTATGTTCAGCAAGGTCAAATATACAAAAGAAGTACTTAGAAGAAATAG
CAGATTTATATGAAGACTTCCACGTGATCAAGTTACCGCTTCTACCGAAA
GAAGTTCGTGGACCACAGCAAATTGAAACCTTCTCTGATTGGCTAATCAA
CCCTTATCAACCACCGTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011426XLOC_011426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020350-exon-sc0000354-1491911889:273840..273998TCONS_00020350-exon-sc0000354-1491911889:273840..273998Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:273840..273998TCONS_00020350-exon-sc0000354-1510915933:273840..273998Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:273840..273998TCONS_00020350-exon-sc0000354-1575043694:273840..273998Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:274628..274775TCONS_00020350-exon-sc0000354-1491911889:274628..274775Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:274628..274775TCONS_00020350-exon-sc0000354-1510915933:274628..274775Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:274628..274775TCONS_00020350-exon-sc0000354-1575043694:274628..274775Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:275292..275349TCONS_00020350-exon-sc0000354-1491911889:275292..275349Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:275292..275349TCONS_00020350-exon-sc0000354-1510915933:275292..275349Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:275292..275349TCONS_00020350-exon-sc0000354-1575043694:275292..275349Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:275812..275902TCONS_00020350-exon-sc0000354-1491911889:275812..275902Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:275812..275902TCONS_00020350-exon-sc0000354-1510915933:275812..275902Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:275812..275902TCONS_00020350-exon-sc0000354-1575043694:275812..275902Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:276202..276352TCONS_00020350-exon-sc0000354-1491911889:276202..276352Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:276202..276352TCONS_00020350-exon-sc0000354-1510915933:276202..276352Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:276202..276352TCONS_00020350-exon-sc0000354-1575043694:276202..276352Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:276727..276834TCONS_00020350-exon-sc0000354-1491911889:276727..276834Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:276727..276834TCONS_00020350-exon-sc0000354-1510915933:276727..276834Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:276727..276834TCONS_00020350-exon-sc0000354-1575043694:276727..276834Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:277640..277787TCONS_00020350-exon-sc0000354-1491911889:277640..277787Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:277640..277787TCONS_00020350-exon-sc0000354-1510915933:277640..277787Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:277640..277787TCONS_00020350-exon-sc0000354-1575043694:277640..277787Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:278711..278769TCONS_00020350-exon-sc0000354-1491911889:278711..278769Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:278711..278769TCONS_00020350-exon-sc0000354-1510915933:278711..278769Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:278711..278769TCONS_00020350-exon-sc0000354-1575043694:278711..278769Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:278894..279021TCONS_00020350-exon-sc0000354-1491911889:278894..279021Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:278894..279021TCONS_00020350-exon-sc0000354-1510915933:278894..279021Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:278894..279021TCONS_00020350-exon-sc0000354-1575043694:278894..279021Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1491911889:279196..279780TCONS_00020350-exon-sc0000354-1491911889:279196..279780Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1510915933:279196..279780TCONS_00020350-exon-sc0000354-1510915933:279196..279780Clytia hemisphaericaexon
TCONS_00020350-exon-sc0000354-1575043694:279196..279780TCONS_00020350-exon-sc0000354-1575043694:279196..279780Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020350-proteinTCONS_00020350-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000354supercontigsc0000354:273840..279780 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.4764	49.4312	34.1221	25.2927	21.1258	20.3388	21.5149	26.4379	29.1127	25.3529	24.3614	21.8997	22.8742	21.7438	13.3726	12.7658	21.6825	18.0818	10.0218	13.7756	13.2456	14.8633	34.7332	32.5892	23.2422	30.2677	12.6485	11.7612	22.2161	23.4903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025723Anion-transp_ATPase-like_dom
IPR016300ATPase_ArsA/GET3
IPR027542ATPase_ArsA/GET3_euk
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016887ATPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00020350 vs. Swiss-Prot (Human)
Match: ASNA (ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 1.056e-136
Identity = 201/332 (60.54%), Postives = 268/332 (80.72%), Query Frame = 2 
Query:   56 DFEEMAPSIQHLLDQKELRWVFXXXXXXXXXXXCSCSVAIQLAKHKKNVLIISTDPAHNISDAFDQKFGRKPTAVKGFTNLFAMEIDPNLGLTKLPEDVLEDQDFMSMGGKMFQDLLGAFPGIDEAMSFAEVMKLVRSMDFSVVVFDTAPTGHTLRLISFPSVMXXXXXXXXXXXXRIQPMIQQFSTLLGMQDMNIEQFTSRLDETLPVIKEVSAQFQNPDHTTFVCVCISEFLSLYETEHLVQELTKMNMDIRTIIVNQLVFPKKLQGGSACDLCSARSNIQKKYLEEIADLYEDFHVIKLPLLPKEVRGPQQIETFSDWLINPYQPPS*Q 1051
            D E + P++ ++++Q+ L+W+FVGGKGGVGKTTCSCS+A+QL+K +++VLIISTDPAHNISDAFDQKF + PT VKG+ NLFAMEIDP+LG+ +LP++  E+ + +SMG KM Q+ + AFPGIDEAMS+AEVM+LV+ M+FSVVVFDTAPTGHTLRL++FP+++E+ L +L+ +K++I P I Q   +LG+ DMN +Q  S+L+ETLPVI+ VS QF++P+ TTF+CVCI+EFLSLYETE L+QEL K  +D   IIVNQLVFP   +    C +C AR  IQ KYL+++ DLYEDFH++KLPLLP EVRG  ++ TFS  L+ PY+PPS Q
Sbjct:   20 DVEPLEPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFDQKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGDMNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQELAKCKIDTHNIIVNQLVFPDPEK---PCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPHEVRGADKVNTFSALLLEPYKPPSAQ 348
The following BLAST results are available for this feature:
BLAST of TCONS_00020350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASNA1.056e-13660.54ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2[more]
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