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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020353 ID=TCONS_00020353|Name=TCONS_00020353|organism=Clytia hemisphaerica|type=transcript|length=445bp
CAGCAGCCCTTGAAATGTCCATTTTGGATTTTCctgaaaatgtttaattt
ccTTCTCCTACATAAAGACATAGACACAAACTCAGGCATTCCAGAAGATA
TANAGCATCGATCGTAGCTAAAGAAAAAGCTATTGAGGCTGAAATCGCAC
AAACATCCAAAATTACTAAAGACACGATTGCTAAGCTTCAACAAGAGATC
GCCAAAATTCAAGCACAAAAACCATACGAAGAAATGACTACTGACGAATA
TATGGAAGCCAACCCAGATTTGAAACGCGAAGCTGACAGAGAAATCAGCG
AAATCGGATGGAGATAAatggtttaaaaatttttattgtatatTTCTGTA
CGTCAATTGAAACTAAAAAATATTAGTTGTTTACATAATaacaattcttt
ttttctttgtttcatcTGACACCCTTTGTGTGTCAAATTCCTTCG Run BLAST on NCBI transcript from alignment at sc0000354:240648..242665- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020353 ID=TCONS_00020353|Name=TCONS_00020353|organism=Clytia hemisphaerica|type=transcript|length=2018bp|location=Sequence derived from alignment at sc0000354:240648..242665- (Clytia hemisphaerica)
CAGCAGCCCTTGAAATGTCCATTTTGGATTTTCCTGAAAATGTTTAATTT
CCTTCTCCTACATAAAGACATAGACACAAACTCAGGCATTCCAGAAGATA
TANAGCATCGATCGTAGCTAAAGAAAAAGCTATTGTAAGAATTCAGTTTT
TCTGTTTTTATTCATGGACTTTCAAACTAAATTTCCTGGACACAACTTGT
TTTAGTTGTGGAGGAACGTTTTTAACGTTTATAAGGCATTTGATTGTTAA
CTGAAGGGGGCATAAAACTGGTTTGAGTTAATAGTTATCAATATTACTTG
TGCGAGTATCAATCATATTAGTCTGGAGATCCATACTCTCTATTCAAAAC
TTACACCACATAAGCAAAAATCCCATCAGAAGCTACTCATTGAGAGTATG
GTTTTTTTGACCGAGTTTGAATTTGTTTACATTTGGTTTGAATTTCGTGC
CAAAAAGCCGTTGATAAGGTTAACCAATCAGGGTCACGCACTTCAAATCA
AAACAATAATATCACGTGATTTCAACAATTGTTTAACAGCCAATAGAATT
ATGTGACCAGATTTGGCATCTACAAAAATACCCGGCTACTCTGTTATTTC
TATACAATTATTCGTTTTAACGAAATGTTATACTTCGAAATCACACGAAC
AGAGTAGACGGGTCACCCAGCTACAATCATATAGAACACAAAAAAAATAG
TAAATGCAGCTTTATAGCCCTTCATAGTACATTCATCTTTGTTGTATATC
AAGATAACTAGAGTCTGGCACCAATTATTTAGAACACACTAAAAAGTATT
TAGTTCTCTTCAAAATTCATTGATCTTTATTTTAGGAGGCTGAAATCGCA
CAAACATCCAAAATTACTAAAGACACGATTGCTAAGCTTCAACAAGAGGT
ATTTTTTTGAAAGCACTTTTATTGTTTTTAATCCAGCAGTTTGAACCTGT
TTGAACCAGTTTGAATGTTGATTTTATACCTTTTTTATCTAACCACGTTT
GAGGGCTATTTCAGTTTAAAGAAAAAATTTCCATGGTATGGTATTCCCAC
GTTATCGGACGCTAATTTTATGCCCTGTTCGAGCTTAAAGGATATATTCT
TGGAACTATATAAAAAATATGATCTCTTTTAAGGTGTTTTTGAATTTTTT
TTGCTGTTTTTATGACATTTTAAGGATAACTTTTTCAGCAAACACCAAAT
TAAATTCCCGCCAAATTTAGTTTTTTCGTCAATCCGCCAAATTAAATTCC
CTCTAAAAAACTTTTTCGGCCATCCGCCAAATTAAATTCCCGCCAAAATT
TCTTCCTTTAAGGTACCCTAAGCATCCGAAGACGTATCCACATTGTAGAA
GTAATCACTTTTATTAAATTGTCAAACCTAAATTAAAAATCTCCACTTTC
ATTTTTTGCAGATCGCCAAAATTCAAGCACAAAAACCATACGAAGAAATG
ACTGTAAGTTTTTTAACTTTAACTTTTTCATCTGTACCAGACTAAAGTAT
ATGCTATTATTTAACATGATAATAATTTGGTCATACTATATGTTTGGATA
TTGATAAGATATCTTTTTATCAAAAGCTTGCACTACTTGATGTACGGAAT
GCAGTAACTATCGCAACGTTGGCAAAATTCTTAACGAGGCAATTCTAGAA
AGGAAAATCTATAAAATTCTTAAAAAATTTCCAAGTATTGAACATGTTGT
CCTGAAATATTCGAAAATTTTTACCCAACGATAGATTTGCATAACAATTT
GGGTCTCGTGAAAGTTTTTACTTATCAAAAGTTGTTTCATTGCATGACTA
TCATTCTTTTAGACTGACGAATATATGGAAGCCAACCCAGATTTGAAACG
CGAAGCTGACAGAGAAATCAGCGAAATCGGATGGAGATAAATGGTTTAAA
AATTTTTATTGTATATTTCTGTACGTCAATTGAAACTAAAAAATATTAGT
TGTTTACATAATAACAATTCTTTTTTTCTTTGTTTCATCTGACACCCTTT
GTGTGTCAAATTCCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020353-exon-sc0000354-1575043694:242532..242665 | TCONS_00020353-exon-sc0000354-1575043694:242532..242665 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1575043694:241768..241830 | TCONS_00020353-exon-sc0000354-1575043694:241768..241830 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1575043694:241213..241254 | TCONS_00020353-exon-sc0000354-1575043694:241213..241254 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1575043694:240648..240853 | TCONS_00020353-exon-sc0000354-1575043694:240648..240853 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1510915933:242532..242665 | TCONS_00020353-exon-sc0000354-1510915933:242532..242665 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1510915933:241768..241830 | TCONS_00020353-exon-sc0000354-1510915933:241768..241830 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1510915933:241213..241254 | TCONS_00020353-exon-sc0000354-1510915933:241213..241254 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1510915933:240648..240853 | TCONS_00020353-exon-sc0000354-1510915933:240648..240853 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1491911889:242532..242665 | TCONS_00020353-exon-sc0000354-1491911889:242532..242665 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1491911889:241768..241830 | TCONS_00020353-exon-sc0000354-1491911889:241768..241830 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1491911889:241213..241254 | TCONS_00020353-exon-sc0000354-1491911889:241213..241254 | Clytia hemisphaerica | exon |
| TCONS_00020353-exon-sc0000354-1491911889:240648..240853 | TCONS_00020353-exon-sc0000354-1491911889:240648..240853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000354 | supercontig | sc0000354:240648..242665 - |
Blast
The following BLAST results are available for this feature:
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