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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020357 ID=TCONS_00020357|Name=TCONS_00020357|organism=Clytia hemisphaerica|type=transcript|length=2309bp
ATAAGATCACAGTGTCGAAATTAACAAGTTGGAAATCTTTATAATATTAG
CATCTACTGTACTATATTGTAAATCTCAGATTTCtacttgaagaaaattt
ttggttggaagttaatatttttgtgtttttgaacAGGTCAAATAATACAG
AGTACTAGATAGAACAAGggacatttttttggaattgaacCTTTTTGATG
GATTTCATATCAATCAAAAAGGCATTACTTGTTGATTAGAGACATTAAAA
GTATTAAAATTGGTGATTGTCTTGGAATTTAGGAGTTGGAAATCACAACC
TGCTTTTTCTAAACCAAAGAGCCACATTCGAACTTAAAAATTGAACACTT
GAAAACGAATTGATTTAGTGGAGCCCATCAAAAGTGTTATCATCGTTTAC
GGGTGATGGAAAATGGTCACACGCTCTCATTCAGATTCCCTGAAATGATG
AAACAAAATTCAAATGCAAGTGCGTCCATGACTCAATCGTTTAACAACAA
TAAAAGCACAGATTATGGGCGAAAGAAAGTCATTTTTCCATCTCTGTCTC
AGGAACTACCAGCAAGGATACAACGAAAAAGTACTCGAGTACATCAcgag
aaaacaacaaaaataccATTCGATCAACCGCTCGTTTTACGAATAAACGA
TAAAAACGATGAAATCGAGATGAGTCGAGTCGAATCGATGGCTCCTTCGG
ATTCGAAACAGAACGTACTTTTGCGAACAGTGACTCACAGTGAAAAATAT
TGCCGCCGTAAACAAAATACGAAAAGATCGTCGTTACCAAATAAAACATA
CCCGAAAACTATCCCGACAAAACTCGTTACCGAGAAATTAAAATTCGGGA
ACGAAGAGTTATACGATTTTATAAATAACCAACCGAGAATCAACGACTCC
TTTCAACAACATTTACAAACATTCGAACTGAAACGTATGAGTAGTACTGA
GAAGGTTAGGAAATGGTTGAATAATCATTATATAGAACATGTTGCTAAGG
ACTCAAAAGATCAGGATGTTACAAAAGGATCTTCAGCTAAATCGAAAATG
GACGCAAATAATAATGAAGCCGAGGGATCTCAAGTGACTTAAGGAGGAGC
ATGGATTTTGACATAATGTATTCAAAACATCTTCTTGGAtttttagcctg
gatatccagaccgtgtTTTTGCCTATCGTTTACGGTCTGGTCTTCCTAGA
TCGCCTGCATCCAAATCTGAGGATACAAATAATGACTAATGACTGATATT
GATATTGAGCttttaatacactttttttataagaacaaagaaatcttcgT
CGAGACTCGgctattttattttttcgacacaattttttcaatgcCCCTGG
ACAGTATATCTTCGAGTCTGCGTACAGTACGGTTTCTTGAAAAGCTCAAT
TTCACAATACAACTAACGTGACTTCCTACTACCTAAAAGAACTTCATTTT
CTTTAGCTAGAGcttttttattgataatttgGTTGTTTCCTCGTTTCTCG
AAATTTGAAGTTCGGACGAGAAAGTCACTCTTGGGCCTATCgaatatttt
aatttgaaaagagtttttatagacttccaggctatattctgagccttatt
agacccttccaacctaagttagagcgctcCCAAATCGATTGTagctataa
gatttcgtgggattTTCCCTTTTTCCCAAATATTACTACCTTGATTGTAG
CAATCCTTCGATGTTGACAGAAGTGTACTATTTCTTTATTTGAGTGTAAG
AGTGTGATTTTGAAGGACCGTCCTCAGGAACCAGATTCTTTGGgcttatg
tatgtgtgtttttctgcagcggagacggtaaggttctaatttaaCTAGAT
CCTGCCCAATTGAGGACGACGGCAAATCAGCACTTTGACCGTCCTCGGTT
TTGCaaggtcagaactgcgggttattccaaatcgcttcagttacTCTACC
GTCctaaaaagtgcaaatacataaactcgctattctTTTGGGCGAGGTCT
AGTCTAAGAGCTAGACTACTAATTAAcatcagttttactcaaaagctTCT
TTTACAGTAGTAAAAAAAACCTACCTAGcagtttgtttacttttcgagTG
TTTAAATTATTCCAGCTTTCAGTAcggctttttttcttctttttgacttt
gagGCAGGATTGCTCCTACGTTTTGTGTTAAAAGAATAGTGGTCTGGAAA
TCGAGACTAGGCGAGGTCTAAGGTTGATGTAAAGATTTATTAATTCCGAT
TTAGTCCAGGGGAATTTAGGtttgacccaaaatttgcgtacacatggaat
tttttgatt Run BLAST on NCBI protein sequence of TCONS_00020357-protein >TCONS_00020357-protein ID=TCONS_00020357-protein|Name=TCONS_00020357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MENGHTLSFRFPEMMKQNSNASASMTQSFNNNKSTDYGRKKVIFPSLSQE
LPARIQRKSTRVHHEKTTKIPFDQPLVLRINDKNDEIEMSRVESMAPSDS
KQNVLLRTVTHSEKYCRRKQNTKRSSLPNKTYPKTIPTKLVTEKLKFGNE
ELYDFINNQPRINDSFQQHLQTFELKRMSSTEKVRKWLNNHYIEHVAKDS
KDQDVTKGSSAKSKMDANNNEAEGSQVT Run BLAST on NCBI transcript from alignment at sc0000354:221091..223399 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020357 ID=TCONS_00020357|Name=TCONS_00020357|organism=Clytia hemisphaerica|type=transcript|length=2309bp|location=Sequence derived from alignment at sc0000354:221091..223399 (Clytia hemisphaerica)
aatcaaaaaattccatgtgtacgcaaattttgggtcaaaCCTAAATTCCC
CTGGACTAAATCGGAATTAATAAATCTTTACATCAACCTTAGACCTCGCC
TAGTCTCGATTTCCAGACCACTATTCTTTTAACACAAAACGTAGGAGCAA
TCCTGCctcaaagtcaaaaagaagaaaaaaagccgTACTGAAAGCTGGAA
TAATTTAAACActcgaaaagtaaacaaactgCTAGGTAGGTTTTTTTTAC
TACTGTAAAAGAagcttttgagtaaaactgatgTTAATTAGTAGTCTAGC
TCTTAGACTAGACCTCGCCCAAAagaatagcgagtttatgtatttgcact
ttttagGACGGTAGAgtaactgaagcgatttggaataacccgcagttctg
accttGCAAAACCGAGGACGGTCAAAGTGCTGATTTGCCGTCGTCCTCAA
TTGGGCAGGATCTAGttaaattagaaccttaccgtctccgctgcagaaaa
acacacatacataagcCCAAAGAATCTGGTTCCTGAGGACGGTCCTTCAA
AATCACACTCTTACACTCAAATAAAGAAATAGTACACTTCTGTCAACATC
GAAGGATTGCTACAATCAAGGTAGTAATATTTGGGAAAAAGGGAAaatcc
cacgaaatcttatagctACAATCGATTTGGgagcgctctaacttaggttg
gaagggtctaataaggctcagaatatagcctggaagtctataaaaactct
tttcaaattaaaatattcGATAGGCCCAAGAGTGACTTTCTCGTCCGAAC
TTCAAATTTCGAGAAACGAGGAAACAACcaaattatcaataaaaaagCTC
TAGCTAAAGAAAATGAAGTTCTTTTAGGTAGTAGGAAGTCACGTTAGTTG
TATTGTGAAATTGAGCTTTTCAAGAAACCGTACTGTACGCAGACTCGAAG
ATATACTGTCCAGGGgcattgaaaaaattgtgtcgaaaaaataaaatagc
CGAGTCTCGAcgaagatttctttgttcttataaaaaaagtgtattaaaaG
CTCAATATCAATATCAGTCATTAGTCATTATTTGTATCCTCAGATTTGGA
TGCAGGCGATCTAGGAAGACCAGACCGTAAACGATAGGCAAAAacacggt
ctggatatccaggctaaaaaTCCAAGAAGATGTTTTGAATACATTATGTC
AAAATCCATGCTCCTCCTTAAGTCACTTGAGATCCCTCGGCTTCATTATT
ATTTGCGTCCATTTTCGATTTAGCTGAAGATCCTTTTGTAACATCCTGAT
CTTTTGAGTCCTTAGCAACATGTTCTATATAATGATTATTCAACCATTTC
CTAACCTTCTCAGTACTACTCATACGTTTCAGTTCGAATGTTTGTAAATG
TTGTTGAAAGGAGTCGTTGATTCTCGGTTGGTTATTTATAAAATCGTATA
ACTCTTCGTTCCCGAATTTTAATTTCTCGGTAACGAGTTTTGTCGGGATA
GTTTTCGGGTATGTTTTATTTGGTAACGACGATCTTTTCGTATTTTGTTT
ACGGCGGCAATATTTTTCACTGTGAGTCACTGTTCGCAAAAGTACGTTCT
GTTTCGAATCCGAAGGAGCCATCGATTCGACTCGACTCATCTCGATTTCA
TCGTTTTTATCGTTTATTCGTAAAACGAGCGGTTGATCGAATggtatttt
tgttgttttctcgTGATGTACTCGAGTACTTTTTCGTTGTATCCTTGCTG
GTAGTTCCTGAGACAGAGATGGAAAAATGACTTTCTTTCGCCCATAATCT
GTGCTTTTATTGTTGTTAAACGATTGAGTCATGGACGCACTTGCATTTGA
ATTTTGTTTCATCATTTCAGGGAATCTGAATGAGAGCGTGTGACCATTTT
CCATCACCCGTAAACGATGATAACACTTTTGATGGGCTCCACTAAATCAA
TTCGTTTTCAAGTGTTCAATTTTTAAGTTCGAATGTGGCTCTTTGGTTTA
GAAAAAGCAGGTTGTGATTTCCAACTCCTAAATTCCAAGACAATCACCAA
TTTTAATACTTTTAATGTCTCTAATCAACAAGTAATGCCTTTTTGATTGA
TATGAAATCCATCAAAAAGgttcaattccaaaaaaatgtccCTTGTTCTA
TCTAGTACTCTGTATTATTTGACCTgttcaaaaacacaaaaatattaact
tccaaccaaaaattttcttcaagtaGAAATCTGAGATTTACAATATAGTA
CAGTAGATGCTAATATTATAAAGATTTCCAACTTGTTAATTTCGACACTG
TGATCTTAT Coding sequence (CDS) from alignment at sc0000354:221091..223399 >TCONS_00020357 ID=TCONS_00020357|Name=TCONS_00020357|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000354:221091..223399 (Clytia hemisphaerica)
TTAAGTCACTTGAGATCCCTCGGCTTCATTATTATTTGCGTCCATTTTCG
ATTTAGCTGAAGATCCTTTTGTAACATCCTGATCTTTTGAGTCCTTAGCA
ACATGTTCTATATAATGATTATTCAACCATTTCCTAACCTTCTCAGTACT
ACTCATACGTTTCAGTTCGAATGTTTGTAAATGTTGTTGAAAGGAGTCGT
TGATTCTCGGTTGGTTATTTATAAAATCGTATAACTCTTCGTTCCCGAAT
TTTAATTTCTCGGTAACGAGTTTTGTCGGGATAGTTTTCGGGTATGTTTT
ATTTGGTAACGACGATCTTTTCGTATTTTGTTTACGGCGGCAATATTTTT
CACTGTGAGTCACTGTTCGCAAAAGTACGTTCTGTTTCGAATCCGAAGGA
GCCATCGATTCGACTCGACTCATCTCGATTTCATCGTTTTTATCGTTTAT
TCGTAAAACGAGCGGTTGATCGAATggtatttttgttgttttctcgTGAT
GTACTCGAGTACTTTTTCGTTGTATCCTTGCTGGTAGTTCCTGAGACAGA
GATGGAAAAATGACTTTCTTTCGCCCATAATCTGTGCTTTTATTGTTGTT
AAACGATTGAGTCATGGACGCACTTGCATTTGAATTTTGTTTCATCATTT
CAGGGAATCTGAATGAGAGCGTGTGACCATTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020357-exon-sc0000354-1491911889:221091..223399 | TCONS_00020357-exon-sc0000354-1491911889:221091..223399 | Clytia hemisphaerica | exon |
| TCONS_00020357-exon-sc0000354-1510915933:221091..223399 | TCONS_00020357-exon-sc0000354-1510915933:221091..223399 | Clytia hemisphaerica | exon |
| TCONS_00020357-exon-sc0000354-1575043694:221091..223399 | TCONS_00020357-exon-sc0000354-1575043694:221091..223399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000354 | supercontig | sc0000354:221091..223399 . |
Blast
The following BLAST results are available for this feature:
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