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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020364 ID=TCONS_00020364|Name=TCONS_00020364|organism=Clytia hemisphaerica|type=transcript|length=1008bp
TTAGGGACCTTACGAATCGGCGACGCCGCTTTAGATGACGCCGTATGCGC
CATTTTTGCTCCTTATGCGCATGCGTGCCCGGGAATCACCTTTTGCAAAA
AGTCGGCCTCGTGAGGTCAACTCCTTCAAAACAGTCTTTTTCACGTCGTC
CTTCGAAGAAACATGGCTGAAGTAAAATCTGATGAAACTTTGACAAAAAA
AACCATCATGAAATGGGATGATAAGCACGATGTTTTGTTGGGGCGTGAGC
TCTTATTCATGAAGCCATATAATTTCAAACCTGGTACCAGAGATAGCGGT
TCAGCGTGGACAGCAGTTGCAGAAGACTTAAACAAGGTCACTGAGGTCAA
GTTCGATGTGACACAGAAGTCAGTTCGAGACAGAACGAAGATCGCAATGA
ACAACCACAAACGAAAAATGCGTCAACAAACAGCGGAATCCGGGTCAGTG
GAAAATCCAACGGAAATGGACCAGGTATGGGAGGAGATAAGCTCTGAAAT
GCAAGAAGCATCCGAGAAACATGAAGCCACATCCTCCAACAAGAAGAAAG
AGGAAGACAAATATAAGGCTGATGCTGAAGCAATTCGTGCTACAGCTATG
GAAACACATGCAGAAACAAGGAAGAGGAAAGCAGCTGACGATGGCAGCCC
ATCATCATCTAAAGGTAAACGCAATACTGGTACTGAGACATTTTCGTTTC
TGATGGCAAAACTTGAAACCGATAAGGAAACAAAGGACAAGGAACtagaa
atgaagaaaatgacTATGGAACGTGAACAACAGCAATTACAACTTTTAAT
TGAACAACAGAAACAAATACAGGcaaatcaacaacaacaaaaccaaaTTT
CTTTACAACTTATTCAAGCTTTATCACAAATGAACAATAAAAACCCTTCA
AATAAATGAGTTGGTCCTTCTAATGACTTCACGTTGAATTTGGTGGTTCC
TTTTTATGACTTTGTACGTTGAAATTGGCTGTGCTTTCTACGACTTCCAT
TGAAATTG Run BLAST on NCBI protein sequence of TCONS_00020364-protein >TCONS_00020364-protein ID=TCONS_00020364-protein|Name=TCONS_00020364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MAEVKSDETLTKKTIMKWDDKHDVLLGRELLFMKPYNFKPGTRDSGSAWT
AVAEDLNKVTEVKFDVTQKSVRDRTKIAMNNHKRKMRQQTAESGSVENPT
EMDQVWEEISSEMQEASEKHEATSSNKKKEEDKYKADAEAIRATAMETHA
ETRKRKAADDGSPSSSKGKRNTGTETFSFLMAKLETDKETKDKELEMKKM
TMEREQQQLQLLIEQQKQIQANQQQQNQISLQLIQALSQMNNKNPSNK Run BLAST on NCBI transcript from alignment at sc0000355:40575..41878+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020364 ID=TCONS_00020364|Name=TCONS_00020364|organism=Clytia hemisphaerica|type=transcript|length=1304bp|location=Sequence derived from alignment at sc0000355:40575..41878+ (Clytia hemisphaerica)
TTAGGGACCTTACGAATCGGCGACGCCGCTTTAGATGACGCCGTATGCGC
CATTTTTGCTCCTTATGCGCATGCGTGCCCGGGAATCACCTTTTGCAAAA
AGTCGGCCTCGTGAGGTCAACTCCTTCAAAACAGTCTTTTTCACGTCGTC
CTTCGAAGAAACATGGCTGAAGTAAAATCTGATGAAACTTTGACAAAAAA
AACGTAAGTTTTAAGCTGAATCCATTGGAGTTTGATAATTTTCATTTAGA
AAATATAATTGCTTGAAAAACTAACCAATTATTTTATATTTTTGGGCATA
AATTTTCCAAATTTCAAACCAAAACAAACATAAATGCCTTTTGCCTTGAT
TGCTCTTGGATTTGGAAACAAATTGGATATCACTTCTTCGATTTAAATGT
GCAACTTTCTGGCTATTCATATACAATCTGAAGAAGGTAAAATGACACAA
ATTATTGTATATGTAAGCATTAATCAGGCATATGTTTTCACATTTTTAGC
ATCATGAAATGGGATGATAAGCACGATGTTTTGTTGGGGCGTGAGCTCTT
ATTCATGAAGCCATATAATTTCAAACCTGGTACCAGAGATAGCGGTTCAG
CGTGGACAGCAGTTGCAGAAGACTTAAACAAGGTCACTGAGGTCAAGTTC
GATGTGACACAGAAGTCAGTTCGAGACAGAACGAAGATCGCAATGAACAA
CCACAAACGAAAAATGCGTCAACAAACAGCGGAATCCGGGTCAGTGGAAA
ATCCAACGGAAATGGACCAGGTATGGGAGGAGATAAGCTCTGAAATGCAA
GAAGCATCCGAGAAACATGAAGCCACATCCTCCAACAAGAAGAAAGAGGA
AGACAAATATAAGGCTGATGCTGAAGCAATTCGTGCTACAGCTATGGAAA
CACATGCAGAAACAAGGAAGAGGAAAGCAGCTGACGATGGCAGCCCATCA
TCATCTAAAGGTAAACGCAATACTGGTACTGAGACATTTTCGTTTCTGAT
GGCAAAACTTGAAACCGATAAGGAAACAAAGGACAAGGAACtagaaatga
agaaaatgacTATGGAACGTGAACAACAGCAATTACAACTTTTAATTGAA
CAACAGAAACAAATACAGGcaaatcaacaacaacaaaaccaaaTTTCTTT
ACAACTTATTCAAGCTTTATCACAAATGAACAATAAAAACCCTTCAAATA
AATGAGTTGGTCCTTCTAATGACTTCACGTTGAATTTGGTGGTTCCTTTT
TATGACTTTGTACGTTGAAATTGGCTGTGCTTTCTACGACTTCCATTGAA
ATTG Coding sequence (CDS) from alignment at sc0000355:40575..41878+ >TCONS_00020364 ID=TCONS_00020364|Name=TCONS_00020364|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000355:40575..41878+ (Clytia hemisphaerica)
ATGGCTGAAGTAAAATCTGATGAAACTTTGACAAAAAAAACCATCATGAA
ATGGGATGATAAGCACGATGTTTTGTTGGGGCGTGAGCTCTTATTCATGA
AGCCATATAATTTCAAACCTGGTACCAGAGATAGCGGTTCAGCGTGGACA
GCAGTTGCAGAAGACTTAAACAAGGTCACTGAGGTCAAGTTCGATGTGAC
ACAGAAGTCAGTTCGAGACAGAACGAAGATCGCAATGAACAACCACAAAC
GAAAAATGCGTCAACAAACAGCGGAATCCGGGTCAGTGGAAAATCCAACG
GAAATGGACCAGGTATGGGAGGAGATAAGCTCTGAAATGCAAGAAGCATC
CGAGAAACATGAAGCCACATCCTCCAACAAGAAGAAAGAGGAAGACAAAT
ATAAGGCTGATGCTGAAGCAATTCGTGCTACAGCTATGGAAACACATGCA
GAAACAAGGAAGAGGAAAGCAGCTGACGATGGCAGCCCATCATCATCTAA
AGGTAAACGCAATACTGGTACTGAGACATTTTCGTTTCTGATGGCAAAAC
TTGAAACCGATAAGGAAACAAAGGACAAGGAACtagaaatgaagaaaatg
acTATGGAACGTGAACAACAGCAATTACAACTTTTAATTGAACAACAGAA
ACAAATACAGGcaaatcaacaacaacaaaaccaaaTTTCTTTACAACTTA
TTCAAGCTTTATCACAAATGAACAATAAAAACCCTTCAAATAAATGAATG
GCTGAAGTAAAATCTGATGAAACTTTGACAAAAAAAACCATCATGAAATG
GGATGATAAGCACGATGTTTTGTTGGGGCGTGAGCTCTTATTCATGAAGC
CATATAATTTCAAACCTGGTACCAGAGATAGCGGTTCAGCGTGGACAGCA
GTTGCAGAAGACTTAAACAAGGTCACTGAGGTCAAGTTCGATGTGACACA
GAAGTCAGTTCGAGACAGAACGAAGATCGCAATGAACAACCACAAACGAA
AAATGCGTCAACAAACAGCGGAATCCGGGTCAGTGGAAAATCCAACGGAA
ATGGACCAGGTATGGGAGGAGATAAGCTCTGAAATGCAAGAAGCATCCGA
GAAACATGAAGCCACATCCTCCAACAAGAAGAAAGAGGAAGACAAATATA
AGGCTGATGCTGAAGCAATTCGTGCTACAGCTATGGAAACACATGCAGAA
ACAAGGAAGAGGAAAGCAGCTGACGATGGCAGCCCATCATCATCTAAAGG
TAAACGCAATACTGGTACTGAGACATTTTCGTTTCTGATGGCAAAACTTG
AAACCGATAAGGAAACAAAGGACAAGGAACtagaaatgaagaaaatgacT
ATGGAACGTGAACAACAGCAATTACAACTTTTAATTGAACAACAGAAACA
AATACAGGcaaatcaacaacaacaaaaccaaaTTTCTTTACAACTTATTC
AAGCTTTATCACAAATGAACAATAAAAACCCTTCAAATAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020364-exon-sc0000355-1491911889:40575..40777 | TCONS_00020364-exon-sc0000355-1491911889:40575..40777 | Clytia hemisphaerica | exon |
| TCONS_00020364-exon-sc0000355-1510915933:40575..40777 | TCONS_00020364-exon-sc0000355-1510915933:40575..40777 | Clytia hemisphaerica | exon |
| TCONS_00020364-exon-sc0000355-1575043694:40575..40777 | TCONS_00020364-exon-sc0000355-1575043694:40575..40777 | Clytia hemisphaerica | exon |
| TCONS_00020364-exon-sc0000355-1491911889:41074..41878 | TCONS_00020364-exon-sc0000355-1491911889:41074..41878 | Clytia hemisphaerica | exon |
| TCONS_00020364-exon-sc0000355-1510915933:41074..41878 | TCONS_00020364-exon-sc0000355-1510915933:41074..41878 | Clytia hemisphaerica | exon |
| TCONS_00020364-exon-sc0000355-1575043694:41074..41878 | TCONS_00020364-exon-sc0000355-1575043694:41074..41878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000355 | supercontig | sc0000355:40575..41878 + |
Blast
The following BLAST results are available for this feature:
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