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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020366 ID=TCONS_00020366|Name=TCONS_00020366|organism=Clytia hemisphaerica|type=transcript|length=1416bpRun BLAST on NCBI protein sequence of TCONS_00020366-protein >TCONS_00020366-protein ID=TCONS_00020366-protein|Name=TCONS_00020366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp MDYPDPEDFLDQDDYDLYENRFQDEFEMMEEFENENTTKKKNDKVDFTVERun BLAST on NCBI transcript from alignment at sc0000355:229716..238850+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020366 ID=TCONS_00020366|Name=TCONS_00020366|organism=Clytia hemisphaerica|type=transcript|length=9135bp|location=Sequence derived from alignment at sc0000355:229716..238850+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000355:229716..238850+ >TCONS_00020366 ID=TCONS_00020366|Name=TCONS_00020366|organism=Clytia hemisphaerica|type=CDS|length=14850bp|location=Sequence derived from alignment at sc0000355:229716..238850+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020366 vs. Swiss-Prot (Human)
Match: CTF18 (Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens GN=CHTF18 PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 8.549e-53 Identity = 136/344 (39.53%), Postives = 185/344 (53.78%), Query Frame = 1
Query: 448 ITPQSQASKELSELRQRLQGNIEDDADDFDEQQYNNTRQRVFRRPLLGYDMVNVTNTEGDRVFLKL-----SPDTEHEKSKVTFRDTDGRLNLLSVPFEDLLSEVNEKRHQNLIQR-------------------RAINSSDRRVPDIRGTKDLALWVDKYSPHKYTELLSDDGTNRLLLKWLKLWDNVVF-HEGKAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDFTKSTFASRQAILEE--ELVHDKKGRPKMKIALLCGNPGLGKTTLAHVISKHAGYNVIEMNASDDRSTEIFRNRIESSVQMKATVTSHKKPNCLIIDEIDGAPAAAINILTEL 1398
ITP + ++L+EL G E AD + R V RRP + D V+VT+TEG R +L L +P + V +R G+L+LL V L +V+ +R + L+Q + + + + D + LWVD+++P YTELLSDD TNR LLKWLKLWD VVF HE + + + + + S + +LEE E D RPK K+ALLCG PGLGKTTLAHVI++HAGY+V+EMNASDDRS E+FR RIE++ QM++ + + KPNCL+IDEIDGAP AAIN+L +
Sbjct: 130 ITPPP-SPEDLAELWG--HGVSEAAADVGLTRASPAARNPVLRRPPILEDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRG-GGQLDLLGVSLASLKKQVDGERRERLLQEAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELLSDDFTNRCLLKWLKLWDLVVFGHE------------------RPSRKPRPSVEPARVSKEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGAPVAAINVLLSI 451 The following BLAST results are available for this feature:
BLAST of TCONS_00020366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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