TCONS_00020369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020369
Unique NameTCONS_00020369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020369 ID=TCONS_00020369|Name=TCONS_00020369|organism=Clytia hemisphaerica|type=transcript|length=625bp
CCCAAGTAGTGGTGGAAATGACTTTAAAGAAATGTCCAATAAACgtttCC
AATATACAATGATGATGGACATAAAGAAAGTTCAGGAAACACAGAAgcaa
attttggatgttttaagtaACATAAATACGGATGCCAATCAAATTCAAGA
CGAAGAAGATGACGAAATTGAACGGAGTTCCTTAATGGACCAATTTGAGA
GAGTGGAGGAAGAATTGAAACGTCCAGAGAAACGTAGAGCAAAACGTAAA
ATGCTGAAACATTTAGTGGCTGGGAGAAGAGCAGTGTTAATTTCGCTCGA
TGCTCTAATGTCCCGTGGGCTGCAATCCAAATTTTCAAAGGCTGGGAAGG
CGGGGAAGAAAAGTTTCAAGGAGACGAAACATTGCAAATGTATAATTGAT
GCTTTGAAGCAAAAATACCCCGTCGACCTTGACAGGATGATAGGGGATGT
CATCAAACATGCGCCTggcaaaaaggaaaaaacagcCAACGAAGCTGCTG
GCAAATCAGTTGCTGGTAAATCAGTTGCTGGCAAATCGGCCAGTTTTGTG
ACGCTGGGAGGAGCATGTGGCAATGCAAGGGACGATTCCTCAGACAGTGA
TGATTAATTATGAGTCATTAAATTT
Run BLAST on NCBI

protein sequence of TCONS_00020369-protein

>TCONS_00020369-protein ID=TCONS_00020369-protein|Name=TCONS_00020369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
PSSGGNDFKEMSNKRFQYTMMMDIKKVQETQKQILDVLSNINTDANQIQD
EEDDEIERSSLMDQFERVEEELKRPEKRRAKRKMLKHLVAGRRAVLISLD
ALMSRGLQSKFSKAGKAGKKSFKETKHCKCIIDALKQKYPVDLDRMIGDV
IKHAPGKKEKTANEAAGKSVAGKSVAGKSASFVTLGGACGNARDDSSDSD
D
Run BLAST on NCBI

transcript from alignment at sc0000355:71367..73310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020369 ID=TCONS_00020369|Name=TCONS_00020369|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at sc0000355:71367..73310- (Clytia hemisphaerica)
CCCAAGTAGTGGTGGAAATGACTTTAAAGAAATGTCCAATAAACGTAAGA
AATATTTATCGTTTTTGTAAGAGAAGTTAATTGACAAAATTTGACAAATC
TATTTGTATAGCTTTAAAGAAATTGATTATCTTTTTTTTTAAATCATAAG
CTTTCGTAAAGCAATGAAAATAAAGTGACTTGCTGTTCAACGTTTCATGT
GTTGTTTATCCACTCTATAATAAATCTTTGAAGAGCTTAAGACTATTAAA
GCACATTACAGAAAGCAACAAAATTTTATTTTTTTAGGTTTCCAATATAC
AATGATGATGGACATAAAGAAAGTTCAGGAAACACAGAAGCAAATTTTGG
ATGTTTTAAGTAACATAAATACGGATGCCAATCAAATTCAAGACGAAGAA
GATGACGAAATTGAACGGAGTTCCTTAATGGACCAATTTGAGAGAGTGGA
GGAAGAATTGAAACGTCCAGAGAAACGTAGAGCAAAAGTACGTCAAACTT
ATTTTATTGACTTTCTATAACAAAAAAAGCCTAAAATCGAATACACCATT
GTATCTTAAGTAGAACCTCTAATTAAAAAAGTCATCGGGGAAACAGGTAT
TATTATATAGAGAAGAAGTATCAATAATTACGGGGTGTTGCTCGTATGTG
CTTGGAATTAGACATATTAAATAGTATGTACATTTTCGTTTTAGCGTAAA
ATGCTGAAACATTTAGTGGCTGGGAGAAGAGCAGTGTTAATTTCGCTCGA
TGCTCTAATGTCCCGTGGGCTGCAATCCAAATTTTCAAAGGCTGGGAAGG
CGGGGAAGAAAAGTTTCAAGGAGACGAAACATTGCAAATGTATAATTGGT
AAGTGAATTTTTTCGACTATATTGTACAACCATAGAATTACTACAGTAAT
AAATAATGAAATAATATCAAATGTATATAATTTTATTACTTTAGGCGTCC
AAACTTTCCCGAGCAGAAACTTTTGCGATTTTCGCAAATTTGGCCCTTTT
CGAAAGTAAATGTTTTAAAAAATTCTAGGAAGGGCCATTCGCGAAAGTTT
ATGCTCGCGAAAAATTCTTGACAAAATTGAAAATCTCTAAAACTTCAAAC
TTTGAATAAAATGTACCTTTTATGGCACTTTTTAGCCTGCTAAAAGACTA
ATATGTCAAAGGACAATTGTTTCAAGCCAATCCTAGAAGCATTTGTCCTT
CTAAACCATTCTAAGAAAATTTACCGCCCAGACATAATTTGAAGATGAGT
AGATAAACTGAACGCATCATAAGCCCTTTGGATAGTAAAGGGAAAACATT
AGACTGCTTTAGACTATTGATGATTTTTCGCCAACCCTGGACAATATTTA
GCAAAAATTTAGTCCCCGGTGGGAAAAATATCCTAGAATTTCAGCCCCTT
AGAAATTGACTTTGATTTTATCCCCATTCGGAATTCATTGTTTAGAAATT
TCACATCAAAATCATTCCCGCTGGATTTTTTAACCTGAAACCTGGTCGAT
TTTTATCCCCACTGTAGGGGAAAGTTTCACCGGGGCTGTGAGACAGGGGT
GTCTAAAATGTATGTGTTAATAAGGAGAAAAATACCTTGTAATTTGTGAG
TATAATTTTTGATGGGAAAAGATTGAAAACATAAGCTGCTCCATACTTTA
AGGGTGGAAACTATTTTACACCATTAATGATTTTTTTTTCAATATCATTT
TTTTCCAATTTTTACAGATGCTTTGAAGCAAAAATACCCCGTCGACCTTG
ACAGGATGATAGGGGATGTCATCAAACATGCGCCTGGCAAAAAGGAAAAA
ACAGCCAACGAAGCTGCTGGCAAATCAGTTGCTGGTAAATCAGTTGCTGG
CAAATCGGCCAGTTTTGTGACGCTGGGAGGAGCATGTGGCAATGCAAGGG
ACGATTCCTCAGACAGTGATGATTAATTATGAGTCATTAAATTT

Coding sequence (CDS) from alignment at sc0000355:71367..73310-

>TCONS_00020369 ID=TCONS_00020369|Name=TCONS_00020369|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000355:71367..73310- (Clytia hemisphaerica)
ATGCTTTGAAGCAAAAATACCCCGTCGACCTTGACAGGATGATAGGGGAT
GTCATCAAACATGCGCCTGGCAAAAAGGAAAAAACAGCCAACGAAGCTGC
TGGCAAATCAGTTGCTGGTAAATCAGTTGCTGGCAAATCGGCCAGTTTTG
TGACGCTGGGAGGAGCATGTGGCAATGCAAGGGACGATTCCTCAGACAGT
GATGATTAACGTAAAATGCTGAAACATTTAGTGGCTGGGAGAAGAGCAGT
GTTAATTTCGCTCGATGCTCTAATGTCCCGTGGGCTGCAATCCAAATTTT
CAAAGGCTGGGAAGGCGGGGAAGAAAAGTTTCAAGGAGACGAAACATTGC
AAATGTATAATTGGTTTCCAATATACAATGATGATGGACATAAAGAAAGT
TCAGGAAACACAGAAGCAAATTTTGGATGTTTTAAGTAACATAAATACGG
ATGCCAATCAAATTCAAGACGAAGAAGATGACGAAATTGAACGGAGTTCC
TTAATGGACCAATTTGAGAGAGTGGAGGAAGAATTGAAACGTCCAGAGAA
ACGTAGAGCAAAACCAAGTAGTGGTGGAAATGACTTTAAAGAAATGTCCA
ATAAACATGCTTTGAAGCAAAAATACCCCGTCGACCTTGACAGGATGATA
GGGGATGTCATCAAACATGCGCCTGGCAAAAAGGAAAAAACAGCCAACGA
AGCTGCTGGCAAATCAGTTGCTGGTAAATCAGTTGCTGGCAAATCGGCCA
GTTTTGTGACGCTGGGAGGAGCATGTGGCAATGCAAGGGACGATTCCTCA
GACAGTGATGATTAACGTAAAATGCTGAAACATTTAGTGGCTGGGAGAAG
AGCAGTGTTAATTTCGCTCGATGCTCTAATGTCCCGTGGGCTGCAATCCA
AATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAGTTTCAAGGAGACGAAA
CATTGCAAATGTATAATTGGTTTCCAATATACAATGATGATGGACATAAA
GAAAGTTCAGGAAACACAGAAGCAAATTTTGGATGTTTTAAGTAACATAA
ATACGGATGCCAATCAAATTCAAGACGAAGAAGATGACGAAATTGAACGG
AGTTCCTTAATGGACCAATTTGAGAGAGTGGAGGAAGAATTGAAACGTCC
AGAGAAACGTAGAGCAAAACCAAGTAGTGGTGGAAATGACTTTAAAGAAA
TGTCCAATAAACATGCTTTGAAGCAAAAATACCCCGTCGACCTTGACAGG
ATGATAGGGGATGTCATCAAACATGCGCCTGGCAAAAAGGAAAAAACAGC
CAACGAAGCTGCTGGCAAATCAGTTGCTGGTAAATCAGTTGCTGGCAAAT
CGGCCAGTTTTGTGACGCTGGGAGGAGCATGTGGCAATGCAAGGGACGAT
TCCTCAGACAGTGATGATTAACGTAAAATGCTGAAACATTTAGTGGCTGG
GAGAAGAGCAGTGTTAATTTCGCTCGATGCTCTAATGTCCCGTGGGCTGC
AATCCAAATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAGTTTCAAGGAG
ACGAAACATTGCAAATGTATAATTGGTTTCCAATATACAATGATGATGGA
CATAAAGAAAGTTCAGGAAACACAGAAGCAAATTTTGGATGTTTTAAGTA
ACATAAATACGGATGCCAATCAAATTCAAGACGAAGAAGATGACGAAATT
GAACGGAGTTCCTTAATGGACCAATTTGAGAGAGTGGAGGAAGAATTGAA
ACGTCCAGAGAAACGTAGAGCAAAACCAAGTAGTGGTGGAAATGACTTTA
AAGAAATGTCCAATAAACATGCTTTGAAGCAAAAATACCCCGTCGACCTT
GACAGGATGATAGGGGATGTCATCAAACATGCGCCTGGCAAAAAGGAAAA
AACAGCCAACGAAGCTGCTGGCAAATCAGTTGCTGGTAAATCAGTTGCTG
GCAAATCGGCCAGTTTTGTGACGCTGGGAGGAGCATGTGGCAATGCAAGG
GACGATTCCTCAGACAGTGATGATTAACGTAAAATGCTGAAACATTTAGT
GGCTGGGAGAAGAGCAGTGTTAATTTCGCTCGATGCTCTAATGTCCCGTG
GGCTGCAATCCAAATTTTCAAAGGCTGGGAAGGCGGGGAAGAAAAGTTTC
AAGGAGACGAAACATTGCAAATGTATAATTGGTTTCCAATATACAATGAT
GATGGACATAAAGAAAGTTCAGGAAACACAGAAGCAAATTTTGGATGTTT
TAAGTAACATAAATACGGATGCCAATCAAATTCAAGACGAAGAAGATGAC
GAAATTGAACGGAGTTCCTTAATGGACCAATTTGAGAGAGTGGAGGAAGA
ATTGAAACGTCCAGAGAAACGTAGAGCAAAACCAAGTAGTGGTGGAAATG
ACTTTAAAGAAATGTCCAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011444XLOC_011444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020369-exon-sc0000355-1575043694:73267..73310TCONS_00020369-exon-sc0000355-1575043694:73267..73310Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1575043694:72824..73023TCONS_00020369-exon-sc0000355-1575043694:72824..73023Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1575043694:72463..72616TCONS_00020369-exon-sc0000355-1575043694:72463..72616Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1575043694:71367..71593TCONS_00020369-exon-sc0000355-1575043694:71367..71593Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1510915933:73267..73310TCONS_00020369-exon-sc0000355-1510915933:73267..73310Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1510915933:72824..73023TCONS_00020369-exon-sc0000355-1510915933:72824..73023Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1510915933:72463..72616TCONS_00020369-exon-sc0000355-1510915933:72463..72616Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1510915933:71367..71593TCONS_00020369-exon-sc0000355-1510915933:71367..71593Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1491911889:73267..73310TCONS_00020369-exon-sc0000355-1491911889:73267..73310Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1491911889:72824..73023TCONS_00020369-exon-sc0000355-1491911889:72824..73023Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1491911889:72463..72616TCONS_00020369-exon-sc0000355-1491911889:72463..72616Clytia hemisphaericaexon
TCONS_00020369-exon-sc0000355-1491911889:71367..71593TCONS_00020369-exon-sc0000355-1491911889:71367..71593Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020369-proteinTCONS_00020369-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:71367..73310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.321085	0.406535	0.333151	0	0.119217	0.378738	0.21929	0.442679	0.786062	0.939043	0	1.34903	0.188762	0.394194	0.300516	0.324185	0.156055	0.0856278	0.446457	0.293789	0.553961	0.43115	0.516402	0.375659	0	0.179201	0.494018	0.482499	0.336402	0.104069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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