TCONS_00020370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020370
Unique NameTCONS_00020370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020370 ID=TCONS_00020370|Name=TCONS_00020370|organism=Clytia hemisphaerica|type=transcript|length=416bp
CTGGATTTCATCAAAGGAGACGAATCCTTAAGAAAGCAATCGGAACgatt
tcaagtttttaacaGCCGTTCATCGCTGATACAATTCAGGAGCTGCGCTG
AAAAAGAGGCCAGCATTATTGGAATGACTATTTTAATTCACATATTCATG
TCATCTTGTTCATACTAAATTTGTTATCTCAATTAAAAGTGATCCAGACG
ACCCCGCTAGTTTGAGAGGAACAGAGAGGCTTCGATTACCGTTTTTGAGG
GGGTCCTATTTTGAAACAGTTAAATGTTTGCTTGTGCCAGAAATGTACAC
CTATTCATCATGAAGAGGGAGAACCTTTCACACAGAGACGCAGCCCAATA
TATGTATGGCAAACTTCAACTAACTGTTTTTCACATTATGCCACTTGGAA
ATGAACAACAATATTC
Run BLAST on NCBI

transcript from alignment at sc0000355:94027..94610-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020370 ID=TCONS_00020370|Name=TCONS_00020370|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at sc0000355:94027..94610- (Clytia hemisphaerica)
CTGGATTTCATCAAAGGAGACGAATCCTTAAGAAAGCAATCGGAACGATT
TCAAGTTTTTAACAGCCGTTCATCGCTGATACAATTCAGGAGCTGCGCTG
AAAAAGAGGCCAGCATTATTGGAATGACTATTTTAATTCACATATTCATG
TCATCTTGTTCATACTAAATTTGTTATCTCAATTAAAAGTGATCCAGACG
ACCCCGCTAGTTTGAGAGGAACAGAGAGGCTTCGATTACCGTTTTTGAGG
GGGTCCTATTTTGAAACAGTTAAATGTTTGCTTGTGCCAGAAATGTACAC
CTATTCATCATGAAGAGGGAGAACCTTTCACACAGAGACGCAGCCCAATA
TATGTATGGCAAACTTCAACTAACTGTTTTTCACATTATGCCACTTGGAA
ATGTACGGGTGTTTACATGTTTTTGTCTATCTTGGTTTTCATGCAAAACT
TAACTTTTTATTTTATGATATTCTCGATTGGACAGGCCAACAGCTGCTTT
AATTGAGTCTTCAGGAAACTTTTTTAGTAATACTCACCATAGCATATTTA
TTACCTTTTTGTAAATTTAGGAACAACAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011445XLOC_011445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020370-exon-sc0000355-1575043694:94209..94610TCONS_00020370-exon-sc0000355-1575043694:94209..94610Clytia hemisphaericaexon
TCONS_00020370-exon-sc0000355-1575043694:94027..94040TCONS_00020370-exon-sc0000355-1575043694:94027..94040Clytia hemisphaericaexon
TCONS_00020370-exon-sc0000355-1510915933:94209..94610TCONS_00020370-exon-sc0000355-1510915933:94209..94610Clytia hemisphaericaexon
TCONS_00020370-exon-sc0000355-1510915933:94027..94040TCONS_00020370-exon-sc0000355-1510915933:94027..94040Clytia hemisphaericaexon
TCONS_00020370-exon-sc0000355-1491911889:94209..94610TCONS_00020370-exon-sc0000355-1491911889:94209..94610Clytia hemisphaericaexon
TCONS_00020370-exon-sc0000355-1491911889:94027..94040TCONS_00020370-exon-sc0000355-1491911889:94027..94040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:94027..94610 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.167132	0	0	0	0.913207	0.440698	1.03144	1.29984	1.61007	1.56277	1.36974	0.569931	0.82863	0.0973209	0.313321	1.80127	1.97811	0	1.1439	0.497129	0	0	0.178658	0.184014	0.328456	0	0.250809	0	0.193814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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