TCONS_00020391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020391
Unique NameTCONS_00020391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020391 ID=TCONS_00020391|Name=TCONS_00020391|organism=Clytia hemisphaerica|type=transcript|length=693bp
GTTTGGACAAAATAAGGTctgaacttttaaaattacacAATAGAATGTCC
CTCAGAATCGAAAGATTAATCcatgaaaaatttttctttcatagGCATTG
TGGAGCATTTTCTATGACACTAAATCAGCTACAGACATTGGCACTTTATA
TCAAGCACGCAACTTTCTAAATGCACGAAATGTCACCAAGGAGCCAATTA
AATGTGTCAATGCCTCAGAAGAAATACTTCTGAAGTATGTTAAAGCAATC
TTACTGGCAGCCTACgacctttttttatcaaacaataaCAATATTATTGC
CAGTGAACAAACCAAAGAGAATTACAACAAGATTTGCGATGGTATGGTAA
CAACATTTTTGATGCCTGCATATCAAATGGAAGAGGAAATTGAATTTGGA
CCACACCAACAAACCAACAGTGTACCCAACTACACAAAAAATGTCCTTGC
ACTCGGATACATGGTTAAATCGTTTATGGATGCAAGAAAGTGTGCAGGAT
TATTCGTCTCcataaatatttcattttatatttcacACTCACACACAAAA
CTAAATATGCATTATATACCCTTCACTTATTGGCTCAAGTTAACGACCTG
TTGCCACCATCTTTGGCCCATGAAATTACTTGGAACAGGGCGGTCAACAA
TAAAGGATACGCACGTTCAAATGTGGAGCTTGACAGAGAGCTG
Run BLAST on NCBI

protein sequence of TCONS_00020391-protein

>TCONS_00020391-protein ID=TCONS_00020391-protein|Name=TCONS_00020391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MVTTFLMPAYQMEEEIEFGPHQQTNSVPNYTKNVLALGYMVKSFMDARKC
AGLFVSINISFYISHSHTKLNMHYIPFTYWLKLTTCCHHLWPMKLLGTGR
STIKDTHVQMWSLTES
Run BLAST on NCBI

transcript from alignment at sc0000355:25785..26477

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020391 ID=TCONS_00020391|Name=TCONS_00020391|organism=Clytia hemisphaerica|type=transcript|length=693bp|location=Sequence derived from alignment at sc0000355:25785..26477 (Clytia hemisphaerica)
CAGCTCTCTGTCAAGCTCCACATTTGAACGTGCGTATCCTTTATTGTTGA
CCGCCCTGTTCCAAGTAATTTCATGGGCCAAAGATGGTGGCAACAGGTCG
TTAACTTGAGCCAATAAGTGAAGGGTATATAATGCATATTTAGTTTTGTG
TGTGAGTgtgaaatataaaatgaaatatttatgGAGACGAATAATCCTGC
ACACTTTCTTGCATCCATAAACGATTTAACCATGTATCCGAGTGCAAGGA
CATTTTTTGTGTAGTTGGGTACACTGTTGGTTTGTTGGTGTGGTCCAAAT
TCAATTTCCTCTTCCATTTGATATGCAGGCATCAAAAATGTTGTTACCAT
ACCATCGCAAATCTTGTTGTAATTCTCTTTGGTTTGTTCACTGGCAATAA
TATTGttattgtttgataaaaaaaggtcGTAGGCTGCCAGTAAGATTGCT
TTAACATACTTCAGAAGTATTTCTTCTGAGGCATTGACACATTTAATTGG
CTCCTTGGTGACATTTCGTGCATTTAGAAAGTTGCGTGCTTGATATAAAG
TGCCAATGTCTGTAGCTGATTTAGTGTCATAGAAAATGCTCCACAATGCc
tatgaaagaaaaatttttcatgGATTAATCTTTCGATTCTGAGGGACATT
CTATTgtgtaattttaaaagttcagACCTTATTTTGTCCAAAC

Coding sequence (CDS) from alignment at sc0000355:25785..26477

>TCONS_00020391 ID=TCONS_00020391|Name=TCONS_00020391|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000355:25785..26477 (Clytia hemisphaerica)
GCTCTCTGTCAAGCTCCACATTTGAACGTGCGTATCCTTTATTGTTGACC
GCCCTGTTCCAAGTAATTTCATGGGCCAAAGATGGTGGCAACAGGTCGTT
AACTTGAGCCAATAAGTGAAGGGTATATAATGCATATTTAGTTTTGTGTG
TGAGTgtgaaatataaaatgaaatatttatgGAGACGAATAATCCTGCAC
ACTTTCTTGCATCCATAAACGATTTAACCATGTATCCGAGTGCAAGGACA
TTTTTTGTGTAGTTGGGTACACTGTTGGTTTGTTGGTGTGGTCCAAATTC
AATTTCCTCTTCCATTTGATATGCAGGCATCAAAAATGTTGTTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011452XLOC_011452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020391-proteinTCONS_00020391-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020391-exon-sc0000355-1491911889:25785..26477TCONS_00020391-exon-sc0000355-1491911889:25785..26477Clytia hemisphaericaexon
TCONS_00020391-exon-sc0000355-1510915933:25785..26477TCONS_00020391-exon-sc0000355-1510915933:25785..26477Clytia hemisphaericaexon
TCONS_00020391-exon-sc0000355-1575043694:25785..26477TCONS_00020391-exon-sc0000355-1575043694:25785..26477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:25785..26477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.573062	0.21444	0.165991	0.324792	0.764249	0.390566	0.848161	0.352906	0.185308	0.382557	0	0.112509	0.322946	0.151883	0.345463	0.268069	0.0550269	0.112802	0.0779207	0.602343	0.558161	0.44931	0.199047	0.414139	0.472201	0.35119	0.361801	0.290132	0.990345	0.303734
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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