TCONS_00020393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020393
Unique NameTCONS_00020393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020393 ID=TCONS_00020393|Name=TCONS_00020393|organism=Clytia hemisphaerica|type=transcript|length=381bp
GGTCTACATTGGACAAAGCAACGCCATCTCGGGTAACTAATCAGGCAGTG
CTAATTGTTGCAAGGAATAATGACGGAAACCCTTGTCCGATTCCCATAAA
CTCCCCAGAGGTTTATCAGCAACCTAGTGAAGCATCGTATGACATATTAG
CAGAGCAAATGATCACAGCCATTAAAGAGAATTTATCTGCAGATCTTTTC
ACGCggtattttttaacttgattttttggtttttgaaacGTAGATATTCT
TAATGATTCAATGCACAACTAATAAATAGTAATAGCTGCTCTGTATACTG
GTACTcaattgatttagattttaaacATGTATTACTGACcaaatatttag
atttttttcctagCTCATACAATAATCCTGC
Run BLAST on NCBI

transcript from alignment at sc0000355:49467..49847

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020393 ID=TCONS_00020393|Name=TCONS_00020393|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000355:49467..49847 (Clytia hemisphaerica)
GCAGGATTATTGTATGAGctaggaaaaaaatctaaatatttgGTCAGTAA
TACATgtttaaaatctaaatcaattgAGTACCAGTATACAGAGCAGCTAT
TACTATTTATTAGTTGTGCATTGAATCATTAAGAATATCTACgtttcaaa
aaccaaaaaatcaagttaaaaaataccGCGTGAAAAGATCTGCAGATAAA
TTCTCTTTAATGGCTGTGATCATTTGCTCTGCTAATATGTCATACGATGC
TTCACTAGGTTGCTGATAAACCTCTGGGGAGTTTATGGGAATCGGACAAG
GGTTTCCGTCATTATTCCTTGCAACAATTAGCACTGCCTGATTAGTTACC
CGAGATGGCGTTGCTTTGTCCAATGTAGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011454XLOC_011454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020393-exon-sc0000355-1491911889:49467..49847TCONS_00020393-exon-sc0000355-1491911889:49467..49847Clytia hemisphaericaexon
TCONS_00020393-exon-sc0000355-1510915933:49467..49847TCONS_00020393-exon-sc0000355-1510915933:49467..49847Clytia hemisphaericaexon
TCONS_00020393-exon-sc0000355-1575043694:49467..49847TCONS_00020393-exon-sc0000355-1575043694:49467..49847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:49467..49847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.248265	0	0	0	0	0.137181	0.142464	0.585623	1.25693	0	2.53935	1.09633	0.688336	0.797718	0	0	0.860053	0	0	0	0.301845	0	0.233253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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